Lag0026720 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026720
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L21
Location	chr10: 41011675 .. 41012795 (-)
RNA-Seq Expression	Lag0026720
Synteny	Lag0026720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCGGCCATGGACTTAGGTCGCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACTACATACCTGAGGACGTATAAGATCGGCGAATATGTCGACATCAAGGTTAACGGAGCCGTCCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGCACTGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTTCGTTTCAGTTTTCGATTCTTTTGTGTCTGGATTGATTTTGTATTAGGTTTTTTTTTTTGTTAGATCTGTTCTCGTTTTCACTCTGCTGTGGTTTCTGGAATGTCTGTGAGTTTGGCGTTTTAGGTCTTGGATTGTGTTTGATTTTTGGAGTAACTGATTTAGGTTTAGGCTGGAATGGTTTTGGACTTTGTTCTGTATGTATGTTGCTGGTTGATGTTGATTTGAGCCTCGATGATATTGAATATGTATCTGTTAATTTGTATTGCTACTCATTCGATGGATTTATGGAATTGCGTGGCTTTCGATGGTCGAATGTTAAGGATTTGTTTAAATATTGTGATGTATGATGTTGCTGGAAATTCATACCATGTTTTACTTGTCTGTAAATACTTGTTTGAAGAGTTAAATACATTGAGAAGTCTCCGTCTTAGGATTTGTTCATTAATCGATTTGGTGTTTGGTGTAAAGAAACAAACCAGATATTCTTCCTTAGAAGGCTTATGATTATATGATCTTTTATTATTTTCAAGATGCCTAAGCCAAGTTGTAATTTCTGTTATTTGGTTATGATAGCGAGCAATTACAATCACTTGTATTCTGATGTTTCTGAATGAAATTTGCAGGTGGGTAACAGAATAATCAAGAAGAGAATCCATGTTCGTGTTGAGCATGTGCAGCCCTCTCGATGCACCGAAGAGTTCCGATTGAGGAAGGTGAAGAATGACCAATTGAAGGCCGAAGCCAAGGCCAAGGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTTACTCCAATTCCATACGATGTCGTTAACGATCTCAAGGGTGGTTATTAG

mRNA sequence

ATGCCGGCCGGCCATGGACTTAGGTCGCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACTACATACCTGAGGACGTATAAGATCGGCGAATATGTCGACATCAAGGTTAACGGAGCCGTCCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGCACTGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTGGGTAACAGAATAATCAAGAAGAGAATCCATGTTCGTGTTGAGCATGTGCAGCCCTCTCGATGCACCGAAGAGTTCCGATTGAGGAAGGTGAAGAATGACCAATTGAAGGCCGAAGCCAAGGCCAAGGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTTACTCCAATTCCATACGATGTCGTTAACGATCTCAAGGGTGGTTATTAG

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTAGGTCGCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACTACATACCTGAGGACGTATAAGATCGGCGAATATGTCGACATCAAGGTTAACGGAGCCGTCCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGCACTGGTCGTGTATGGAACGTTACCAAGCGCGCCATCGGTGTTGAGATCAACAAGCAGGTGGGTAACAGAATAATCAAGAAGAGAATCCATGTTCGTGTTGAGCATGTGCAGCCCTCTCGATGCACCGAAGAGTTCCGATTGAGGAAGGTGAAGAATGACCAATTGAAGGCCGAAGCCAAGGCCAAGGGTGAAGTCATTTGCACCAAGAGGCAACCAGAAGGCCCCAAACCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTTACTCCAATTCCATACGATGTCGTTAACGATCTCAAGGGTGGTTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAKAKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of Lag0026720 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 333.6 bits (854), Expect = 9.8e-88
Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. NCBI nr
Match: XP_022934303.1 (60S ribosomal protein L21-1-like [Cucurbita moschata])

HSP 1 Score: 331.6 bits (849), Expect = 3.7e-87
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIG+YVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. NCBI nr
Match: XP_008443016.1 (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa] >TYK25377.1 60S ribosomal protein L21-1 [Cucumis melo var. makuwa])

HSP 1 Score: 330.9 bits (847), Expect = 6.4e-87
Identity = 160/164 (97.56%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. NCBI nr
Match: XP_022934302.1 (60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal protein L21-1 [Cucurbita maxima] >XP_023527248.1 60S ribosomal protein L21-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527250.1 60S ribosomal protein L21-1 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527251.1 60S ribosomal protein L21-1 [Cucurbita pepo subsp. pepo] >KAG6580787.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIG+YVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRC EEFRLRKVKNDQLKAEAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. NCBI nr
Match: XP_031739289.1 (60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal protein L21-1 [Cucumis sativus] >XP_031745254.1 60S ribosomal protein L21-1 [Cucumis sativus] >KAE8651128.1 hypothetical protein Csa_001407 [Cucumis sativus] >KGN43674.2 hypothetical protein Csa_017109 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIG+YVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TG+VWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKND+LKAEAK
Sbjct: 61  TGQVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           AKG VICTKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGAVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-81
Identity = 138/164 (84.15%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 9.3e-81
Identity = 137/164 (83.54%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+G+YVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEF+LRK +ND LKA+AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIGEYVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R  +ND++K +A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGATMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G   ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-41
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRT+++G+YVDIK  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R  +N +   EAK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGATME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.2e-41
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGEYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+G+ VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDQLKAEAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R   N   +AEAK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGATMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

The following BLAST results are available for this feature:

BLAST of Lag0026720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906379.1	9.8e-88	98.17	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_022934303.1	3.7e-87	96.95	60S ribosomal protein L21-1-like [Cucurbita moschata]	[more]
XP_008443016.1	6.4e-87	97.56	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo] >KAA0043756.1 60S ribosoma...	[more]
XP_022934302.1	1.4e-86	96.34	60S ribosomal protein L21-1 [Cucurbita moschata] >XP_022983132.1 60S ribosomal p...	[more]
XP_031739289.1	1.4e-86	96.95	60S ribosomal protein L21-1 [Cucumis sativus] >XP_031739303.1 60S ribosomal prot...	[more]

BLAST of Lag0026720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43291	4.2e-81	84.15	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
Q9FDZ9	9.3e-81	83.54	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
O82574	1.1e-41	57.59	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q54X53	2.5e-41	54.09	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]
Q02753	7.2e-41	52.23	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 6.6E-25 score: 88.9
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 7.5E-46 score: 156.2
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 1.3E-45 score: 153.3
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026720.1	Lag0026720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome