Lag0026694 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026694
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr10: 40666135 .. 40666557 (-)
RNA-Seq ExpressionLag0026694
SyntenyLag0026694
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATCGTCTGATCTGGCATTTCGAGAAGAATGGGCTCTTTTCTGTGAAGAGTGGCTATCGTTTGGCACATAACTTGAGAATTCAGGGGCGCCCATCGTCTTCAGAGTCGACCCAATGGTGTGGTTGGTGGTCGGGTTTGTGGAAGATGAATATCCCCAACAAAGTTAAACTCTTTCTATGGAGATTGTCGCACAATCGACTGCCTACCAAGGATAATTTGATCAAAAGAGGTATGGTTGTCTCAAACTTGTGTGTGATGTGTCAGTCCTCTCATGAAGATTGTGTACATGTGTTCTGGAAGTGTCCTGTTGTTGAGTCTTCGTGGTTGGGCTCTAAGTTTGCTCGTATGTATCTGTCTGCTGTGAGTCTGAATTTTGAGTCTCTGTTATGGGAGATTAAGGGCAGGTTGTGTGCATAG

mRNA sequence

ATGGAGGATCGTCTGATCTGGCATTTCGAGAAGAATGGGCTCTTTTCTGTGAAGAGTGGCTATCGTTTGGCACATAACTTGAGAATTCAGGGGCGCCCATCGTCTTCAGAGTCGACCCAATGGTGTGGTTGGTGGTCGGGTTTGTGGAAGATGAATATCCCCAACAAAGTTAAACTCTTTCTATGGAGATTGTCGCACAATCGACTGCCTACCAAGGATAATTTGATCAAAAGAGGTATGGTTGTCTCAAACTTGTGTGTGATGTGTCAGTCCTCTCATGAAGATTGTGTACATGTGTTCTGGAAGTGTCCTGTTGTTGAGTCTTCGTGGTTGGGCTCTAAGTTTGCTCGTATGTATCTGTCTGCTGTGAGTCTGAATTTTGAGTCTCTGTTATGGGAGATTAAGGGCAGGTTGTGTGCATAG

Coding sequence (CDS)

ATGGAGGATCGTCTGATCTGGCATTTCGAGAAGAATGGGCTCTTTTCTGTGAAGAGTGGCTATCGTTTGGCACATAACTTGAGAATTCAGGGGCGCCCATCGTCTTCAGAGTCGACCCAATGGTGTGGTTGGTGGTCGGGTTTGTGGAAGATGAATATCCCCAACAAAGTTAAACTCTTTCTATGGAGATTGTCGCACAATCGACTGCCTACCAAGGATAATTTGATCAAAAGAGGTATGGTTGTCTCAAACTTGTGTGTGATGTGTCAGTCCTCTCATGAAGATTGTGTACATGTGTTCTGGAAGTGTCCTGTTGTTGAGTCTTCGTGGTTGGGCTCTAAGTTTGCTCGTATGTATCTGTCTGCTGTGAGTCTGAATTTTGAGTCTCTGTTATGGGAGATTAAGGGCAGGTTGTGTGCATAG

Protein sequence

MEDRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYLSAVSLNFESLLWEIKGRLCA
Homology
BLAST of Lag0026694 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 0

Query: 2   EDRLIWHFEKNGLFSVKSGYRLA--HNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKL 61
           EDRLIW++EK G++SV+SGY++A  +N  +Q  PSSS S +   WW+G WKM+IPNK+K+
Sbjct: 792 EDRLIWNYEKTGVYSVRSGYKVALLNNPCVQA-PSSSSSEEVRCWWNGFWKMHIPNKIKV 851

Query: 62  FLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARM 119
           FLWRL  +RLPT  NL KRG+ ++N C  C  + ED +H+FW C   E+ W+ SKF ++
Sbjct: 852 FLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFWICKFAEALWINSKFGKL 909

BLAST of Lag0026694 vs. NCBI nr
Match: XP_039834390.1 (uncharacterized protein LOC120695147 [Panicum virgatum])

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-22
Identity = 57/116 (49.14%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 1   MEDRLIWHFEKNGLFSVKSGYRLAHNLR--IQGRPSSSESTQWCG----WWSGLWKMNIP 60
           MEDR  WHF+K GLFSVKS Y+LA   R    GR ++S  +   G     W  +W M +P
Sbjct: 867 MEDRHAWHFDKKGLFSVKSAYKLAIQRRENEMGRNAASSESLPVGNSGFRWDKIWGMKVP 926

Query: 61  NKVKLFLWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSW 111
           NKVK+F+WRL HN L  + NL++RGM V  LC MCQ   ED  H+F+KC  V+  W
Sbjct: 927 NKVKMFIWRLVHNSLAVQRNLLRRGMKVDTLCPMCQRLEEDPGHLFFKCKGVKECW 982

BLAST of Lag0026694 vs. NCBI nr
Match: XP_023899813.1 (uncharacterized protein LOC112011695 [Quercus suber])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0

Query: 3   DRLIWHFEKNGLFSVKSGYRLAHN--LRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLF 62
           D+LIW   +NG F+V+S Y LA N    I G  SS+ ST  C +W+ +W + +P+K++ F
Sbjct: 825 DKLIWTETRNGQFTVRSAYHLAMNRSSSISGGSSSNNSTLKC-FWNKIWSIPVPHKIRHF 884

Query: 63  LWRLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYL 122
            WR+ H+ LPTK NL++R ++  +LC  C+ + E   HV W CP  + +W  SK      
Sbjct: 885 AWRVCHDALPTKSNLLRRKVIQEDLCKSCREAPETVGHVLWSCPKAKEAWECSKLVIEGF 944

Query: 123 SAVSLNFESLLWEI 135
              +L F+ L+WE+
Sbjct: 945 DRQNLTFQDLMWEL 957

BLAST of Lag0026694 vs. NCBI nr
Match: XP_022143319.1 (uncharacterized protein LOC111013220 [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 0

Query: 3   DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLW 62
           DRLIW+FEKNG+ +VKS Y+LAH        S+S S     WW  +W++N+P+K+K+F W
Sbjct: 22  DRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLAKWWKDVWQLNLPSKIKVFFW 81

Query: 63  RLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYLSA 122
           R   +RLPT  NLI RG+ V +    C    ED +H+FW C V ++    SKF+ +    
Sbjct: 82  RPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWTCKVSKNQRQVSKFSHLPQDV 141

Query: 123 VSLNFESLLWEIKGRL 139
             L+   LL + +G L
Sbjct: 142 RPLSLLHLLRDCEGIL 157

BLAST of Lag0026694 vs. NCBI nr
Match: XP_023909336.1 (uncharacterized protein LOC112020997 [Quercus suber])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-21
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 0

Query: 3    DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLW 62
            D  IW   KNG++S KS YRL     I  +P +S  +    +W+ +WK+NIPNKVK FLW
Sbjct: 1009 DGRIWKETKNGVYSTKSAYRLLSKTAISNQPGTSNPSMLNSFWTNIWKLNIPNKVKHFLW 1068

Query: 63   RLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWLGSKFARMYLSA 122
            R   + LPTK NL++R ++ +  C +C+   ED +H  W C  V+  W   +  + +L  
Sbjct: 1069 RACSDSLPTKMNLVRRKIITNVTCDLCRDQPEDAIHALWDCHGVKEIWWKEEVCKPFLLE 1128

Query: 123  VSLNFESL 131
              +NF+ L
Sbjct: 1129 RFVNFQDL 1136

BLAST of Lag0026694 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-12
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 3   DRLIWHFEKNGLFSVKSGYRLAHNLRIQGRPSSSESTQWCGWWSGLWKMNIPNKVKLFLW 62
           DRL W F ++G FSV+S Y +   L +   P  + ++    +++ LWK+ +P +VK FLW
Sbjct: 253 DRLSWKFSQDGQFSVRSAYEM---LTVDEVPRPNMAS----FFNCLWKVRVPERVKTFLW 312

Query: 63  RLSHNRLPTKDNLIKRGMVVSNLCVMCQSSHEDCVHVFWKCPVVESSWL 112
            + +  + T++   +R +  SN+C +C+   E  +HV   CP     W+
Sbjct: 313 LVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWV 354

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150918.15.2e-2951.26uncharacterized protein LOC111018954 [Momordica charantia][more]
XP_039834390.13.6e-2249.14uncharacterized protein LOC120695147 [Panicum virgatum][more]
XP_023899813.11.0e-2138.81uncharacterized protein LOC112011695 [Quercus suber][more]
XP_022143319.11.0e-2141.18uncharacterized protein LOC111013220 [Momordica charantia][more]
XP_023909336.11.8e-2138.28uncharacterized protein LOC112020997 [Quercus suber][more]
Match NameE-valueIdentityDescription
P0C2F67.8e-1231.19Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 15..110
e-value: 4.8E-21
score: 75.3
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 1..116
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026694.1Lag0026694.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane