Lag0026667 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026667
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 40351578 .. 40355043 (+)
RNA-Seq Expression	Lag0026667
Synteny	Lag0026667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTCGATTGGAAGTGTTCAGCATGTTACTAAGAAGTCCTCCGATGAGCTTTTGAGGAAGTTTGCCGAGGTGGGCTCCGAGTCCGGTGGCGGGAGGAGGCTCTTGGCGGTGGTGAAGCGGCGGAGGAGGAGGGGAACTGAGCCGTGTGAGAGTCCGGTGGGCGGCGGCGGAGGAGTCGTGGAGCGCAAGTGGCTGATTCCGCCGGCGGGGAGGAAGTCGGTTGTGTTGAAGAAAATAGGGATTGTTGGAAGTGGAAGTGGAAGGTCTCAGCAGCTCAGAATTAGAGATTTCAGAAATAAATCTCTCCTTGCAGCCATTCAAAAGGTAAATCTTTCACAATTAAAAAATGGTTAAATTATCAAAAATACCCCTAAACTTTAGGGTTTGTTTCAATTATGTCCATAGACTTTCAAAAATTTCAATTATGCCCTTGAAGTTTCAAAATTGTTTCAAAACTATCCTTGAAGGCTTTTTTTTTTTTTGTTAAATTCATGGATGTAAAATGACGTGTTTGCATATATATTGTTGCTTATGTGAATAGATTTGAACACATACGTGGAAAAAACGATAAAAACACATGCAAACGCATCAATTTTTGTCGATAAATTTAACGGAAAATGTCTCCAATGGTAGTTTTGAAACAAATTTGAAACTTCAAGGGCATAATTGAAACTTTTGAAAGTTCAGGGGTATAATTGAAACAAACCCTAAAGTCGATGGGTATTTTTGATAATTTACTAGTTTAGTAGTTAAGGTACCGTTTCATGACAATTTGATTTTTGAGAATTATGTTTGTTTTCTCTTAAATTTCCTATTATGACTTTCATCCTAGATTTCAATTCCTAGCCAAATTTTAAAAACAAAAACTAACTCTTTAAAAACTTTTTTTTTTTCAAATTGGACTTAATTTTTGTAAACAAGATAGAAGATTATACTAAAACCAACAAATTTATAGGTGAAAGTAGGTGTGTATAAGTTTAATTTTCAAAAACTTATCAAAAGGGACCTAAATGTTTGTGCTTGATTTCTAAATTTTAAAAGTGTCTCATAATTTTAAAAAATTTTAATGGTCACTGTTTAGTTTTTGTTGTCATTTTTTTTAATAAAAAAATTGATTAAGAATTCAAATGTTTATGAAAACTATGATAAGGAAATGGTGAAAAAACAACCATAATATCAAAAATTAAAAATAAAAAATCAAATGATTATCAAATGAGGATGTTAACATTTAATTTGGGTCCTCTAAACTTTTAATTTATATTTAACAAGTCTCTACATTTTCAAATTTTGATCTTTTGAATGGTTTTTTTTTAACTTACAAATTTATTTGACATAAGAGTGAAAGTTTAGAGTTATATTAAATACAAAATTATAATATTAAAAGTATATTACACCTTTTTAAAGTTTAGAGGACTTATACCATACTAAATTGAATTGAAAATTCAAGTATTCTATCGGAGTGACTAAAAATTTAACCTTTTTTATTATTTTAATTTTATTGGGTTTTAGTGCTTTTAGGATTTTTCGGTGATGATATAAAGATAGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTGAAAATATATAGCTAGTTGGTTTAATCAATGATTTTTTTCGTTTGTTTATTATAAAATGTCACAGTGAAGTTTCCAAATCCTGTGAAATTATTATTTATTCACTCTTAGATGTCATAATTCAGAATGAGATGTGAATCCCAAAGGATGGTTGTATTAAATAAATATAGATGCAAATTTGTTTCTTACCCATATAACCTAGGTCTATTTTAATTTATAAACCAATTGAACAAAAAAAATAAAAAAAAAATAAAAAAAAAAAACAAGTTGTAAATTGATATACTCATTTAATCAAGATTTCATTTTCTAAAATCATTTTTGACCAATTGCATTCTTATGGTGATGGAAGGTCAATTTTGTGAATATGGGTTTTTTTTAGTCAATTTTGTGAATATGGGTATTTTGGTTATATTAGATGTTCTTTAAATTTGAGGACTTTTTTCACATTTAGATTTAGATTTTAAAATTAGAATGATGAAATACATAAATGTTATCAATTTAATCTAAATTGGGACATTTAAGTTTAACTATGCATCTAAAATTTTATTTTGTGTTATCAATTGATAGAATGATAAAATTAGAGGTGGTAATTTAACTATAAGTTTGTACTAATATATAGATTTAAATTTGATAAAACTGAAAATTTTTATGCTAAAGAAAAGGAAAAAACTGATTCTTTTTTCTTTTATAACTTTATTATTACACTATAAAAGTTGCACTAAAAAAGAGAGAATATTGAGAATACATGGATAAGTAATTAAATCTATCCTAATTTAAAAAGTTCAAACATATTGGTAGTGATTGATTTAACAAGCCACTTTCTGTTTGTTTGGAGGCTGGAAAAGGAATGAAAATGGGTTTTTTTTTTTTTTTTTTTAATATATATACATATATATATATATATATATATTTACTTATAGTTTTAAATAATTAAAATATATATATATATATATATATATATATATTTATATATATTTATTTCAAAAAAAAAAAATATATATATATTTATATATATAGTAATGTATGATGGTGATGATTTCCCCCCACCTGGTGGCACTGTCACTTTCATTAATGTCTTTTTTTAGATATCCTTTGGCTTCCAACTTTAATTTCCCACCCATTTATTTTATTTATTTATTTATTTTTCATTTTTTAAAATATTAATTCACAAATCAAATCATCACTTTTGTATTTTCTATATATATAAAAAAAATCAAATAATTATTATGTGTTCAAGCCTTGTTTTCCTTTCCAAAAATGTTCTCAATGAACAATTAATTTTCTAGTAAAGTCGAACCATGATAGTTTTAAAACAAATTGTGAAATTCATGTAATATAACGAGTTATAATAAAGAAAAAAAAAAAGGATGGTCTTATTTCTTCATACATGAAATTTATCACTTTTAAAACTCATCGTTAAATTACAAGTTTAGTCTTCGAACAATGGTGTATAAACTTTAAACTTTAAACTTGAAATTTTAATTTTGTGTCCCTGATATATTCAAAATTTCTAAAAATCAACATAGTTTTAGATATAAAATTGAATTTGATGTATAATAGAATTCATAGATTTTAAAAAATGTCGAATATATCAATAACTTAACATAATTCTATTATATTTTTTTTATGAGTCAAAAACCTAACTTATTTCCTCGATGAAGAAGTTAGATGTTGAAATCCTTCATCCTCAGTTGTTATTTTTTTAATTGACGTTCAAATCAATTATGAAAACTAAATATTTAATTATTTTATGATTAACATTTTATTTTTGGGGGTATGATGCAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGGTGTTATTGGAGAAACATTACAACACTCATAGACGTTTGATAAGTGACATTGTCTGA

mRNA sequence

ATGGATTCTTCGATTGGAAGTGTTCAGCATGTTACTAAGAAGTCCTCCGATGAGCTTTTGAGGAAGTTTGCCGAGGTGGGCTCCGAGTCCGGTGGCGGGAGGAGGCTCTTGGCGGTGGTGAAGCGGCGGAGGAGGAGGGGAACTGAGCCGTGTGAGAGTCCGGTGGGCGGCGGCGGAGGAGTCGTGGAGCGCAAGTGGCTGATTCCGCCGGCGGGGAGGAAGTCGGTTGTGTTGAAGAAAATAGGGATTGTTGGAAGTGGAAGTGGAAGGTCTCAGCAGCTCAGAATTAGAGATTTCAGAAATAAATCTCTCCTTGCAGCCATTCAAAAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGGTGTTATTGGAGAAACATTACAACACTCATAGACGTTTGATAAGTGACATTGTCTGA

Coding sequence (CDS)

ATGGATTCTTCGATTGGAAGTGTTCAGCATGTTACTAAGAAGTCCTCCGATGAGCTTTTGAGGAAGTTTGCCGAGGTGGGCTCCGAGTCCGGTGGCGGGAGGAGGCTCTTGGCGGTGGTGAAGCGGCGGAGGAGGAGGGGAACTGAGCCGTGTGAGAGTCCGGTGGGCGGCGGCGGAGGAGTCGTGGAGCGCAAGTGGCTGATTCCGCCGGCGGGGAGGAAGTCGGTTGTGTTGAAGAAAATAGGGATTGTTGGAAGTGGAAGTGGAAGGTCTCAGCAGCTCAGAATTAGAGATTTCAGAAATAAATCTCTCCTTGCAGCCATTCAAAAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGGTGTTATTGGAGAAACATTACAACACTCATAGACGTTTGATAAGTGACATTGTCTGA

Protein sequence

MDSSIGSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRRGTEPCESPVGGGGGVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTVEGASKVLLEKHYNTHRRLISDIV

Homology

[Close]

BLAST of Lag0026667 vs. NCBI nr
Match: XP_022935142.1 (uncharacterized protein LOC111442101 [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 123/143 (86.01%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MDSSI----GSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRRGTEPCESPVG 60
           MDSS     GSVQHV +KSSD+LL+KFAEVGSESGGGRRL  VVKRRRRR  E CESP  
Sbjct: 1   MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRSNEECESP-- 60

Query: 61  GGGGVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTV 120
            GGGVVERKWLIPPAGRKSVVLKKIGI GSGSGRSQQLRIRDFRNKS L AIQKTWRRTV
Sbjct: 61  SGGGVVERKWLIPPAGRKSVVLKKIGI-GSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTV 120

Query: 121 EGASKVLLEKHYNTHRRLISDIV 140
           EGASKVLLEKHYNTHRRLISDIV
Sbjct: 121 EGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of Lag0026667 vs. NCBI nr
Match: XP_022983155.1 (uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetical protein SDJN02_19422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-55
Identity = 123/143 (86.01%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MDSSI----GSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRRGTEPCESPVG 60
           MDSS     GSVQHV +KSSD+LL+KFAEVGSESGGGRRL  VVKRRRRR  E CESP  
Sbjct: 1   MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESP-- 60

Query: 61  GGGGVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTV 120
            GGGVVERKWLIPPAGRKSVVLKKIGI GSGSGRSQQLRIRDFRNKS L AIQKTWRRTV
Sbjct: 61  SGGGVVERKWLIPPAGRKSVVLKKIGI-GSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTV 120

Query: 121 EGASKVLLEKHYNTHRRLISDIV 140
           EGASKVLLEKHYNTHRRLISDIV
Sbjct: 121 EGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of Lag0026667 vs. NCBI nr
Match: XP_023526943.1 (uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 9.3e-55
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 1   MDSSI----GSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRRGTEPCESPVG 60
           MDSS     GSVQHV +KSSD+LL+KFAEVGSESGGGRRL  VVKRRRRR  E CESP  
Sbjct: 1   MDSSSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPNEECESP-- 60

Query: 61  GGGGVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTV 120
            GGGVVERKWLIPPAGRKSVVLKKIGI GSGSGRSQQLRIRDFRNKS L AIQKTWRRTV
Sbjct: 61  SGGGVVERKWLIPPAGRKSVVLKKIGI-GSGSGRSQQLRIRDFRNKSFLGAIQKTWRRTV 120

Query: 121 EGASKVLLEKHYNTHRRLISDIV 140
           EGASKV LEKHYNTHRRLISDIV
Sbjct: 121 EGASKVFLEKHYNTHRRLISDIV 140

[Close]

BLAST of Lag0026667 vs. NCBI nr
Match: XP_008443054.1 (PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 uncharacterized protein E6C27_scaffold236G00620 [Cucumis melo var. makuwa] >TYK25399.1 uncharacterized protein E5676_scaffold352G005410 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 7.9e-54
Identity = 118/140 (84.29%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MDSSIGSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRR-GTEPCESPVGGGG 60
           MDSSIG+VQHV +KSSDELLRKFAEVGSESGGGRRLL VVKRRR+R   E C+SP   GG
Sbjct: 1   MDSSIGNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEECDSP--SGG 60

Query: 61  GVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTVEGA 120
           GVVERKWLI P GRKSVVLKK+GI   G+GRSQQLRIRDFRNKS+L AIQKTWRRTVEGA
Sbjct: 61  GVVERKWLISPVGRKSVVLKKVGI---GNGRSQQLRIRDFRNKSILGAIQKTWRRTVEGA 120

Query: 121 SKVLLEKHYNTHRRLISDIV 140
           SKVLLEKHYNTHRRLISDIV
Sbjct: 121 SKVLLEKHYNTHRRLISDIV 135

[Close]

BLAST of Lag0026667 vs. NCBI nr
Match: XP_004136571.1 (uncharacterized protein LOC101222384 [Cucumis sativus] >KGN59301.1 hypothetical protein Csa_001466 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 3.0e-53
Identity = 118/141 (83.69%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MDSSIGSVQHVTKKSSDELLRKFAEVGSESGGGRRLLAVVKRRRRR--GTEPCESPVGGG 60
           MDSSIG+VQHV +KSSDELLRKFAEVGSESGGGRRLL VVKRRR+R    E C+SP  G 
Sbjct: 1   MDSSIGNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRKRVNNEEYCDSP-SGT 60

Query: 61  GGVVERKWLIPPAGRKSVVLKKIGIVGSGSGRSQQLRIRDFRNKSLLAAIQKTWRRTVEG 120
           GGVVERKWLI P GRKSVVLKK+GI   G+GRSQQLRIRDFRNKS+L AIQKTWRRTVEG
Sbjct: 61  GGVVERKWLISPVGRKSVVLKKVGI---GNGRSQQLRIRDFRNKSILGAIQKTWRRTVEG 120

Query: 121 ASKVLLEKHYNTHRRLISDIV 140
           ASKVLLEKHYNTHRRLISDIV
Sbjct: 121 ASKVLLEKHYNTHRRLISDIV 137

The following BLAST results are available for this feature:

BLAST of Lag0026667 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935142.1	1.9e-55	86.01	uncharacterized protein LOC111442101 [Cucurbita moschata]	[more]
XP_022983155.1	3.2e-55	86.01	uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetic...	[more]
XP_023526943.1	9.3e-55	85.31	uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo]	[more]
XP_008443054.1	7.9e-54	84.29	PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 unc...	[more]
XP_004136571.1	3.0e-53	83.69	uncharacterized protein LOC101222384 [Cucumis sativus] >KGN59301.1 hypothetical ...	[more]

BLAST of Lag0026667 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36355	EXPRESSED PROTEIN	coord: 3..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026667.1	Lag0026667.1	mRNA