Lag0026648 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026648
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 40082812 .. 40083986 (-)
RNA-Seq ExpressionLag0026648
SyntenyLag0026648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGACAGGTCCGTGGTTCGAATCTCCCCAACCCCACATGTTGTAAGAAAAATACTTGAAATGAATTTTTAATGAAAGCATCGATATAATAAATTTGCATTTCACAATACCTTAATAATATACCAATGATTTTATATATTACAGACATTTTATTTAAAATATTAAAAACACACAATAAAAGAAGTAACATATGAGGTATATCATTTTGTATATATATATCACAGTTATAGGAGGTCTTCTTCGCCTTGGAAATCAATATGGTCTTTACAAGCTCTCCCTAGACTAAAAGTTGGGGTGTTGAAGATTGTGAACGATATTATCCCCACAAAGGCTAATATCCAGTCCAAAGGGATTGCTACTCAAGTCTCGTGCGCAATTTGTAGGAAAAGGAAGGAAACAACATCCCACCTAATGTGGGATTGTAAAATTCCTAGATCTATGTGGCCCATTTTCATCCCCAATTTGATTCTCTCCCCCTGTTTTGCAGGAAAGATCGGGATCCGAAGGAGCTTTGGGCGTGGATGATCGACAATCTGTCAAAGGAAGAGTTGGAAAGGGGAGCGTCTATTCTTTGGAGCATTTGGAATTTCATAAACAAGATTATCCACAACAATTTGACCCCAGCATCAGAAGCTTTGCAAATTTCCATTGAAACGAATATAAAGGAGCGAATTCTTACATTCGACAAGCAGAGGAACTCGAGAACAGCGAGGAGCCAAGTGAGTCAGGCTATGTGGGAAAGACCTAAATTGAATCAGTGGAAGTTGAATTCGGATGTCGCCTGGTTCGAGAAAGACAAGCGTAGAGGCATTGGATGGATCGTGCGTGACTCAACTGGATCCATGATTTGTTCTGAGATGAAGGTCATTTCCAATCCATGGCCAATTAAAATGTTGGAGGCTCAAGCGATCTTTGAAGGCCTCAATTGCATCAAGGACACCTGCAAGCAACGCAGAATTCCCCTAGTTATCGAATCAGACGCCTTGGAGGTCATAAAGGTGCTGAAGAAAGAAGAGGAAGACTTATCTCACTTGAAGACGATCACGGAAGCCGTCTCCCTTGCTGTCGATGAAGCCTTTTCCGTGAGTTTTATCCACTGCAATATAATTTTGAACACAGTAGCGCACTGTGTTGCCAATGAGGCTTGTAATTTTGATTTTGTCGTAGGTTGA

mRNA sequence

ATGACTGACAGTTATAGGAGGTCTTCTTCGCCTTGGAAATCAATATGGTCTTTACAAGCTCTCCCTAGACTAAAAGTTGGGGTGTTGAAGATTGTGAACGATATTATCCCCACAAAGGCTAATATCCAGTCCAAAGGGATTGCTACTCAAGTCTCGAAAGATCGGGATCCGAAGGAGCTTTGGGCGTGGATGATCGACAATCTGTCAAAGGAAGAGTTGGAAAGGGGAGCGTCTATTCTTTGGAGCATTTGGAATTTCATAAACAAGATTATCCACAACAATTTGACCCCAGCATCAGAAGCTTTGCAAATTTCCATTGAAACGAATATAAAGGAGCGAATTCTTACATTCGACAAGCAGAGGAACTCGAGAACAGCGAGGAGCCAAGTGAGTCAGGCTATGTGGGAAAGACCTAAATTGAATCAGTGGAAGTTGAATTCGGATGTCGCCTGGTTCGAGAAAGACAAGCGTAGAGGCATTGGATGGATCGTGCGTGACTCAACTGGATCCATGATTTGTTCTGAGATGAAGGTCATTTCCAATCCATGGCCAATTAAAATGTTGGAGGCTCAAGCGATCTTTGAAGGCCTCAATTGCATCAAGGACACCTGCAAGCAACGCAGAATTCCCCTAGTTATCGAATCAGACGCCTTGGAGGTCATAAAGGTGCTGAAGAAAGAAGAGGAAGACTTATCTCACTTGAAGACGATCACGGAAGCCGTCTCCCTTGCTGTCGATGAAGCCTTTTCCGTGAGTTTTATCCACTGCAATATAATTTTGAACACAGTAGCGCACTGTGTTGCCAATGAGGCTTGTAATTTTGATTTTGTCGTAGGTTGA

Coding sequence (CDS)

ATGACTGACAGTTATAGGAGGTCTTCTTCGCCTTGGAAATCAATATGGTCTTTACAAGCTCTCCCTAGACTAAAAGTTGGGGTGTTGAAGATTGTGAACGATATTATCCCCACAAAGGCTAATATCCAGTCCAAAGGGATTGCTACTCAAGTCTCGAAAGATCGGGATCCGAAGGAGCTTTGGGCGTGGATGATCGACAATCTGTCAAAGGAAGAGTTGGAAAGGGGAGCGTCTATTCTTTGGAGCATTTGGAATTTCATAAACAAGATTATCCACAACAATTTGACCCCAGCATCAGAAGCTTTGCAAATTTCCATTGAAACGAATATAAAGGAGCGAATTCTTACATTCGACAAGCAGAGGAACTCGAGAACAGCGAGGAGCCAAGTGAGTCAGGCTATGTGGGAAAGACCTAAATTGAATCAGTGGAAGTTGAATTCGGATGTCGCCTGGTTCGAGAAAGACAAGCGTAGAGGCATTGGATGGATCGTGCGTGACTCAACTGGATCCATGATTTGTTCTGAGATGAAGGTCATTTCCAATCCATGGCCAATTAAAATGTTGGAGGCTCAAGCGATCTTTGAAGGCCTCAATTGCATCAAGGACACCTGCAAGCAACGCAGAATTCCCCTAGTTATCGAATCAGACGCCTTGGAGGTCATAAAGGTGCTGAAGAAAGAAGAGGAAGACTTATCTCACTTGAAGACGATCACGGAAGCCGTCTCCCTTGCTGTCGATGAAGCCTTTTCCGTGAGTTTTATCCACTGCAATATAATTTTGAACACAGTAGCGCACTGTGTTGCCAATGAGGCTTGTAATTTTGATTTTGTCGTAGGTTGA

Protein sequence

MTDSYRRSSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKGIATQVSKDRDPKELWAWMIDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTFDKQRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTITEAVSLAVDEAFSVSFIHCNIILNTVAHCVANEACNFDFVVG
Homology
BLAST of Lag0026648 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-17
Identity = 69/226 (30.53%), Postives = 108/226 (47.79%), Query Frame = 0

Query: 65  IDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISI----------ETNIKERI 124
           +D   +EE  R   I W IW   NK I   +   +  +Q+ I          +TN+K + 
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 125 LTFDKQRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICS 184
              D     R   +  + A W+ P  N WKLN+D AW       GIGWI+RD  G +I +
Sbjct: 61  ANKDLHLIRRIGDN--TGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 120

Query: 185 EMKVISNPWPIKMLEAQAIFEGLNCIK-DTCK----QRRIPLVIESDALEVIKVLKKEEE 244
           + ++I     I  LE  AI EGL  I+ + C+    +   P+ +ESD+LE I +L ++ +
Sbjct: 121 DCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQ 180

Query: 245 DLSHLKTITEAVSLAVDEAFSVSFIHCNIILNTVAHCVANEACNFD 276
           D + +  + E +   +++   VS  H +   N VAH +A  A   D
Sbjct: 181 DQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMEND 224

BLAST of Lag0026648 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-16
Identity = 65/190 (34.21%), Postives = 91/190 (47.89%), Query Frame = 0

Query: 58  KELWAWMIDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTF 117
           K+ W W+++ LS EE+     I W IW   N+ I    T   + L  SI   I   I   
Sbjct: 16  KDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNI--- 75

Query: 118 DKQR-NSRTARSQVSQ--------------AMWERPKLNQWKLNSDVAWFEKDKRRGIGW 177
           DK    S+T RSQ +                 W  P  N WKLN+D +W E+ +  GIGW
Sbjct: 76  DKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGW 135

Query: 178 IVRDSTGSMICSEMKVISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIK 233
           I+ D  G ++ +    I     I  LE   I  GL  I     Q R P+ +ESD++EVI+
Sbjct: 136 ILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIR 195

BLAST of Lag0026648 vs. NCBI nr
Match: GAU43361.1 (hypothetical protein TSUD_82070 [Trifolium subterraneum])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-13
Identity = 67/277 (24.19%), Postives = 120/277 (43.32%), Query Frame = 0

Query: 4   SYRRSSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKG------IATQVSKDRDP 63
           S+ R +  W  +W ++A P++K  + +I    + T+A +Q KG      +++ ++ + + 
Sbjct: 689 SHLRVNGDWNLLWKIKAPPKVKNLIWRICRRCVSTRARLQDKGVNCPTVVSSVINNENEA 748

Query: 64  KELWAWMIDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTF 123
             +   M+  LSKE+    A ILWSIW   N  I NN+T A   +       ++E     
Sbjct: 749 STIVFQMLRQLSKEDAALFACILWSIWKQRNNQIWNNVTDAQSFVFSRANNMLQEWNTVR 808

Query: 124 DKQRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMK 183
           +    S + +   +  +W +P     K N D ++   + + GIG  +RD  G+ I ++ +
Sbjct: 809 NVAATSVSNQQPGATCIWRKPSAEHVKCNVDASFLPHNNKVGIGICIRDDQGAFILAKTE 868

Query: 184 VISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTI 243
             S    +   EA  +F  LN + +       P+  E D+  V+      + D +    I
Sbjct: 869 WFSPKSEVHTGEALGLFAALNWVHEL---NLGPVEFELDSKRVVDSFHSSKRDFTEFGVI 928

Query: 244 TEAVSLAVDEAF---SVSFIHCNIILNTVAHCVANEA 272
            E         +   SV F+      N VAH +A  A
Sbjct: 929 VEHCKSIFSTYYRNSSVEFVRRQ--ANEVAHKLAKAA 960

BLAST of Lag0026648 vs. NCBI nr
Match: XP_042979954.1 (uncharacterized protein LOC122310138 [Carya illinoinensis])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-13
Identity = 72/272 (26.47%), Postives = 128/272 (47.06%), Query Frame = 0

Query: 8   SSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKGIATQVSKDRDPKELWAWMIDN 67
           + + WKSIW +     +K  + K  N+I+PT++N+  K I      + +  ELW  +I+ 
Sbjct: 43  NGAEWKSIWEMNVPGVVKQFIWKAANNILPTRSNLFKKKIGV---AEHNFLELWGKLINR 102

Query: 68  LSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTFDKQRNSRTA- 127
            +++ELE  A+ +  IW  +N  I      +   L +     +++ I T    + +R   
Sbjct: 103 FNRDELEEIATTMRRIWLRMNLFIFEQKFYSPRELVLKTNEGLEDFISTHILLKENRPGG 162

Query: 128 -RSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVISNPWPI 187
            RS++ +  W++   N+   N D     K++  G+  ++RD+ G ++ S      N    
Sbjct: 163 MRSRLCR-RWKKSGTNEVIANWDATLDTKNRTMGMRIVIRDANGEVLASVCSKRPNVVHP 222

Query: 188 KMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTITEAVSLAV 247
            + E  A+++ +   KD    +   +++E DA  VIK +   EEDLS +  I E V + V
Sbjct: 223 TLAECLALWKAIEVCKDLAFSK---VILEGDAEAVIKKVNNVEEDLSWMGHIIEDVKIVV 282

Query: 248 D--EAFSVSFIHCNIILNTVAHCVANEACNFD 276
              + + V FI      N VAH +A  A   D
Sbjct: 283 KGRKDWKVRFIPRE--GNNVAHLLAKHALTLD 305

BLAST of Lag0026648 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-13
Identity = 61/215 (28.37%), Postives = 92/215 (42.79%), Query Frame = 0

Query: 61  WAWMIDNLSKEELERGASILWSIWNFINKIIHNNL-TPASEALQISIETNIKERILTFDK 120
           W W   +  K   + G  +LWSIW + N+I+H+ +  P S+ ++   E+ I E       
Sbjct: 6   WIWRDSDQYKR--QSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGG 65

Query: 121 QRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVI 180
             N    ++      W  P  + WKLN D  W +     G+GWIVRDS G  I +E    
Sbjct: 66  NLNMED-KNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAEC--- 125

Query: 181 SNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTITE 240
                +K L      E             I + +ESD LEV+ ++ K    L+ +  I E
Sbjct: 126 -----LKALSQSLTLEA-----------GIKIEMESDCLEVVNIINKSSMVLTEVSLIVE 185

Query: 241 AVSLAVDEAFSVSFIHCNIILNTVAHCVANEACNF 275
            +   ++      F H  +  N VAH +A  AC F
Sbjct: 186 DIWKEMESLPIEGFKHLPMKANGVAHGIARRACVF 198

BLAST of Lag0026648 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 69/226 (30.53%), Postives = 108/226 (47.79%), Query Frame = 0

Query: 65  IDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISI----------ETNIKERI 124
           +D   +EE  R   I W IW   NK I   +   +  +Q+ I          +TN+K + 
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 125 LTFDKQRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICS 184
              D     R   +  + A W+ P  N WKLN+D AW       GIGWI+RD  G +I +
Sbjct: 61  ANKDLHLIRRIGDN--TGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 120

Query: 185 EMKVISNPWPIKMLEAQAIFEGLNCIK-DTCK----QRRIPLVIESDALEVIKVLKKEEE 244
           + ++I     I  LE  AI EGL  I+ + C+    +   P+ +ESD+LE I +L ++ +
Sbjct: 121 DCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQ 180

Query: 245 DLSHLKTITEAVSLAVDEAFSVSFIHCNIILNTVAHCVANEACNFD 276
           D + +  + E +   +++   VS  H +   N VAH +A  A   D
Sbjct: 181 DQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRAMEND 224

BLAST of Lag0026648 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 65/190 (34.21%), Postives = 91/190 (47.89%), Query Frame = 0

Query: 58  KELWAWMIDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTF 117
           K+ W W+++ LS EE+     I W IW   N+ I    T   + L  SI   I   I   
Sbjct: 16  KDSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNI--- 75

Query: 118 DKQR-NSRTARSQVSQ--------------AMWERPKLNQWKLNSDVAWFEKDKRRGIGW 177
           DK    S+T RSQ +                 W  P  N WKLN+D +W E+ +  GIGW
Sbjct: 76  DKGTCISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGW 135

Query: 178 IVRDSTGSMICSEMKVISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIK 233
           I+ D  G ++ +    I     I  LE   I  GL  I     Q R P+ +ESD++EVI+
Sbjct: 136 ILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFIN---MQSRSPIYLESDSVEVIR 195

BLAST of Lag0026648 vs. ExPASy TrEMBL
Match: A0A2Z6NHQ6 (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_82070 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-14
Identity = 67/277 (24.19%), Postives = 120/277 (43.32%), Query Frame = 0

Query: 4   SYRRSSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKG------IATQVSKDRDP 63
           S+ R +  W  +W ++A P++K  + +I    + T+A +Q KG      +++ ++ + + 
Sbjct: 689 SHLRVNGDWNLLWKIKAPPKVKNLIWRICRRCVSTRARLQDKGVNCPTVVSSVINNENEA 748

Query: 64  KELWAWMIDNLSKEELERGASILWSIWNFINKIIHNNLTPASEALQISIETNIKERILTF 123
             +   M+  LSKE+    A ILWSIW   N  I NN+T A   +       ++E     
Sbjct: 749 STIVFQMLRQLSKEDAALFACILWSIWKQRNNQIWNNVTDAQSFVFSRANNMLQEWNTVR 808

Query: 124 DKQRNSRTARSQVSQAMWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMK 183
           +    S + +   +  +W +P     K N D ++   + + GIG  +RD  G+ I ++ +
Sbjct: 809 NVAATSVSNQQPGATCIWRKPSAEHVKCNVDASFLPHNNKVGIGICIRDDQGAFILAKTE 868

Query: 184 VISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTI 243
             S    +   EA  +F  LN + +       P+  E D+  V+      + D +    I
Sbjct: 869 WFSPKSEVHTGEALGLFAALNWVHEL---NLGPVEFELDSKRVVDSFHSSKRDFTEFGVI 928

Query: 244 TEAVSLAVDEAF---SVSFIHCNIILNTVAHCVANEA 272
            E         +   SV F+      N VAH +A  A
Sbjct: 929 VEHCKSIFSTYYRNSSVEFVRRQ--ANEVAHKLAKAA 960

BLAST of Lag0026648 vs. ExPASy TrEMBL
Match: A0A803QC75 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-13
Identity = 84/338 (24.85%), Postives = 137/338 (40.53%), Query Frame = 0

Query: 2    TDSYRRSSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKGIATQVSKDRDPKELW 61
            + S  R S  WK  WSLQ  P++K+   + ++D +P   ++  + + T  S     ++ W
Sbjct: 1347 SSSSNRDSHWWKFFWSLQLPPKVKIFAWRAIHDALPVATSLVKRKVITD-STCSVCQQAW 1406

Query: 62   ---------------AWMIDNL-----------------------SKEELERGASILWSI 121
                            W   NL                       SK E+E+    LW+I
Sbjct: 1407 ESVGHALFSCKYAKAVWRHSNLVFDWRLSAAMYKGDYILHLSTIYSKAEMEQIFCSLWTI 1466

Query: 122  WNFINKIIHN------------------NLTPASEALQISIETNIKER-----ILTFDKQ 181
            W   N+I+H                   N   A + ++++  T    R     + +F  Q
Sbjct: 1467 WTERNRIVHGHKARPAKDLASYAVTYLLNYRNAQQRVRLNDLTTCTSRPPQEILYSFFYQ 1526

Query: 182  RNSRTARSQVSQA--MWERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKV 241
              S + + QV  A   W  P+ N +KLN D A     K  GIG I+RDS G+++ +  K 
Sbjct: 1527 IASASPKPQVVPAAQQWRPPEANSYKLNVDAAIDVHQKVIGIGAIIRDSNGNVVAAYSKQ 1586

Query: 242  ISNPWPIKMLEAQAIFEGLNCIKDTCKQRRIPL-VIESDALEVIKVLKKEEEDLSHLKTI 276
                +    +EA A+F+ LN +     Q+++P+ ++ESDAL V+  L+     +S    +
Sbjct: 1587 QPGHFSSHEMEAIALFQSLNWV----IQQQLPISLVESDALMVVNALRAPFNSISSFHDL 1646

BLAST of Lag0026648 vs. ExPASy TrEMBL
Match: A0A2Z6M8I1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_159480 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-13
Identity = 70/271 (25.83%), Postives = 126/271 (46.49%), Query Frame = 0

Query: 2   TDSYRRSSSPWKSIWSLQALPRLKVGVLKIVNDIIPTKANIQSKGIATQ---VSKDRDPK 61
           T +    S  WK++W++++ P+    + +I+++++P K+N+  KGI         ++ P+
Sbjct: 304 TSNQLEDSPIWKNLWNIESPPKQLHLLWRILHNVVPVKSNLLKKGIVCDSICPRSNKSPE 363

Query: 62  EL--------WA--------------------------WMIDNLSKEELERGASILWSIW 121
            +        WA                          +M+ N +KE ++  ++I +SIW
Sbjct: 364 TIDHTFISCDWARMVWFCSPITIMTTQIQPLTFSDWLRYMLTNSTKECMQIISTITYSIW 423

Query: 122 -NFINKIIHNNLTPASEALQISIETNIKERILTFDKQRNSRTARSQV-SQAMWERPKLNQ 181
               NK+ HN  TPASEA++ +++T  +   L  D+  +S+   S V +   W  P  N 
Sbjct: 424 LGRNNKVFHNKDTPASEAVERAMKTLSEYHHLVADRISSSKPPNSIVRNNISWSPPPSNF 483

Query: 182 WKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVISNPWPIKMLEAQAIFEGLNCIKD 234
            KLN D A    D R G G +VR   G  + +  +V +      M EA  +FE L  ++ 
Sbjct: 484 LKLNVD-AHLTSDGRWGFGMLVRRDDGRCVGAATRVCNGDHDADMAEATGLFEALKLVE- 543

BLAST of Lag0026648 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-06
Identity = 50/199 (25.13%), Postives = 96/199 (48.24%), Query Frame = 0

Query: 79  ILWSIWNFINKIIHNNLTPASEALQISIETNIKE-RILTFDKQRNSRTARSQVSQAMWER 138
           +LW +W   N+++       ++ +    E +++E RI T  +   ++   ++ S   W R
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRW-R 422

Query: 139 PKLNQW-KLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVISNPWPIKMLEAQAIFEG 198
           P  +QW K N+D  W   ++R GIGW++R+  G +    M   + P    +LEA+   E 
Sbjct: 423 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEV--KWMGARALPKLKSVLEAE--LEA 482

Query: 199 LN-CIKDTCKQRRIPLVIESDALEVIKVLKKEEEDLSHLKTITEAVSLAVDEAFSVSFIH 258
           +   +    + +   ++ ESD+  +I++L  +E   S LK   + +   + +   V F+ 
Sbjct: 483 MRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPS-LKPTIQDLQRLLSQFTEVKFVF 542

Query: 259 CNIILNTVAHCVANEACNF 275
                NT+A  VA E+ +F
Sbjct: 543 IPREGNTLAERVARESLSF 555

BLAST of Lag0026648 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 5.5e-04
Identity = 37/155 (23.87%), Postives = 74/155 (47.74%), Query Frame = 0

Query: 79  ILWSIWNFINKIIHNNLT-PASEALQISIETNIKERILTFDKQRNSRTARSQVSQ---AM 138
           +LW +W   N+++       A E L+ ++E + +E   +  ++   + +  QV +     
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAME-DFEE--WSTRRELEGKASGPQVERNLSVQ 139

Query: 139 WERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMICSEMKVISNPWPIKMLEAQAIF 198
           W+ P     K N+D  W  ++ R GIGWI+R+ +G ++    + +  P    +LEA+   
Sbjct: 140 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARAL--PRTKNVLEAE--L 199

Query: 199 EGLNCIKDTCKQRRIP-LVIESDALEVIKVLKKEE 229
           E L     T  +     ++ ESDA  ++ +L  ++
Sbjct: 200 EALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD 227

BLAST of Lag0026648 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 7.2e-04
Identity = 24/97 (24.74%), Postives = 50/97 (51.55%), Query Frame = 0

Query: 79  ILWSIWNFINKIIHNNL-TPASEALQISIETNIK--ERILTFDKQRNSRTARSQVSQAMW 138
           ++W IW   N ++ N+  T     +++++    +  +  +T ++Q  +R A        W
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNA-DPSRNTKW 106

Query: 139 ERPKLNQWKLNSDVAWFEKDKRRGIGWIVRDSTGSMI 173
             P  ++ K N D +  E++   G+GWI+R+S G++I
Sbjct: 107 SPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVI 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156777.12.4e-1730.53uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143317.14.5e-1634.21uncharacterized protein LOC111013216 [Momordica charantia][more]
GAU43361.11.6e-1324.19hypothetical protein TSUD_82070 [Trifolium subterraneum][more]
XP_042979954.12.1e-1326.47uncharacterized protein LOC122310138 [Carya illinoinensis][more]
XP_022148549.17.9e-1328.37uncharacterized protein LOC111017181 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSV11.2e-1730.53uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CQG02.2e-1634.21uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A2Z6NHQ67.7e-1424.19Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=390... [more]
A0A803QC751.3e-1324.85Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2Z6M8I13.8e-1325.83Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_159480 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT4G29090.12.6e-0625.13Ribonuclease H-like superfamily protein [more]
AT2G34320.15.5e-0423.87Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G65005.17.2e-0424.74Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 146..271
e-value: 9.5E-16
score: 57.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 140..274
e-value: 8.6E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 132..271
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 132..271
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 145..269
e-value: 2.40965E-12
score: 60.7908
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 141..273

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026648.1Lag0026648.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity