Lag0026637 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026637
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ABC transporter B family member 26, chloroplastic
Location	chr10: 39933243 .. 39934171 (+)
RNA-Seq Expression	Lag0026637
Synteny	Lag0026637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCATGGTGAGACTTGAACCTTGGCCTTTTATCCTTTATGAAATTTGGGTAAATGTATGAGTTTTCTTTGGTTAGAAAGCATGCTAATGGTTGTGTTCTGAATCCATCTTATGCGGGTAAAAAATTATTATTTTCTTTACCTCTCTTCAAACATGGTATGGTGTGACTTTCTTCAATGACTGGAGGTCTCTCATAAACTGCATGTCAAGAGAACAAGAGAAACACTTTATTTTGCACTTCTCCTACAGAACTTTATTTTCTTACTGGTGCAATTCATCAAGTTGCTTCAAATCTCTCTCTTTCAATATAATTTATTTGGGAATACTTTTGCTTGTAGGATATATCATTTTTTGACAGTGAAACTATTGGTGACCTTACAAGCAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGTTTACTTTTGTGAACCAATAACTGATGCCTTGCAAAGTTACTAATTCTTAATCTTAAACTTCTCTTTTGTCCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAAGAATTATTATGCTATTGTATGGCCGGTAAGAATGGTGTCTAGACACCTTAATATTTTTCCTTTCCAGTCTTTTAACTGACAATATATTGTCTGTGTCCTCGAAGAATTCCTTTTGTTCTAAATTTTATGCATGGGAAAGGAAAACATATGATAATTGACGGAAAATGTTTAAGGGGCTTGACTATGTCAATTAGTTTTACTCAAAGCTGGACTGGTTTTTCAGGCAATATCATAGAATTTGGAGTTTTGGCTTGCCTCATGATCTTATTTTTACATCCTTTTTTAGCTTAGAGAACCCTGTTAATTGA

mRNA sequence

ATGGAGCTCATGGTGAGACTTGAACCTTGGCCTTTTATCCTTTATGAAATTTGGGATATATCATTTTTTGACAGTGAAACTATTGGTGACCTTACAAGCAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAAGAATTATTATGCTATTGTATGGCCGCTTAGAGAACCCTGTTAATTGA

Coding sequence (CDS)

ATGGAGCTCATGGTGAGACTTGAACCTTGGCCTTTTATCCTTTATGAAATTTGGGATATATCATTTTTTGACAGTGAAACTATTGGTGACCTTACAAGCAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAAGAATTATTATGCTATTGTATGGCCGCTTAGAGAACCCTGTTAATTGA

Protein sequence

MELMVRLEPWPFILYEIWDISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFTLRIIMLLYGRLENPVN

Homology

[Close]

BLAST of Lag0026637 vs. NCBI nr
Match: XP_022945847.1 (ABC transporter B family member 26, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFDSET+GDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKPLGLCT
Sbjct: 224 DISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKPLGLCT 283

Query: 79  LMICFTLRIIMLLYGRLE 97
           L+ICFTL  IML+YGR +
Sbjct: 284 LIICFTLGAIMLVYGRYQ 301

[Close]

BLAST of Lag0026637 vs. NCBI nr
Match: XP_022945848.1 (ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFDSET+GDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKPLGLCT
Sbjct: 42  DISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKPLGLCT 101

Query: 79  LMICFTLRIIMLLYGRLE 97
           L+ICFTL  IML+YGR +
Sbjct: 102 LIICFTLGAIMLVYGRYQ 119

[Close]

BLAST of Lag0026637 vs. NCBI nr
Match: XP_008446165.1 (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFD+ET+GDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT
Sbjct: 224 DISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 283

Query: 79  LMICFTLRIIMLLYGRLE 97
           LMIC TL  IML+YGR +
Sbjct: 284 LMICSTLGAIMLVYGRYQ 301

[Close]

BLAST of Lag0026637 vs. NCBI nr
Match: XP_008446166.1 (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFD+ET+GDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT
Sbjct: 36  DISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 95

Query: 79  LMICFTLRIIMLLYGRLE 97
           LMIC TL  IML+YGR +
Sbjct: 96  LMICSTLGAIMLVYGRYQ 113

[Close]

BLAST of Lag0026637 vs. NCBI nr
Match: XP_004135488.1 (ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >KGN51761.1 hypothetical protein Csa_007938 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 6.3e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFD+ET+GDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT
Sbjct: 224 DISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 283

Query: 79  LMICFTLRIIMLLYGRLE 97
           LMIC TL  IML+YGR +
Sbjct: 284 LMICSTLGAIMLVYGRYQ 301

[Close]

BLAST of Lag0026637 vs. ExPASy Swiss-Prot
Match: Q8RY46 (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCB26 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-26
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 19  DISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCT 78
           DISFFDS+T+GDLTSRLG+DCQQVSRVIGNDLN+I RN+LQG GALIYLL+LS PLGLCT
Sbjct: 223 DISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCT 282

Query: 79  LMICFTLRIIMLLYG 94
           L+IC  L  +M +YG
Sbjct: 283 LVICCILAAVMFVYG 297

[Close]

BLAST of Lag0026637 vs. ExPASy Swiss-Prot
Match: Q9JJ59 (ABC-type oligopeptide transporter ABCB9 OS=Mus musculus OX=10090 GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 3   LMVRLEPWPFILYEIWDISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGG 62
           L +RL    F      + SFFD    GDL SRL +D   VS ++  ++N+ LRN ++  G
Sbjct: 253 LNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTG 312

Query: 63  ALIYLLLLSKPLGLCTLMICFTLRIIMLLYGR 95
            ++++  LS  L L T M    + ++  +YG+
Sbjct: 313 VVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGK 344

[Close]

BLAST of Lag0026637 vs. ExPASy Swiss-Prot
Match: Q9QYJ4 (ABC-type oligopeptide transporter ABCB9 OS=Rattus norvegicus OX=10116 GN=Abcb9 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.0e-05
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 3   LMVRLEPWPFILYEIWDISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGG 62
           L +RL    F      + SFFD    GDL SRL +D   VS ++  ++N+ LRN ++  G
Sbjct: 253 LNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTG 312

Query: 63  ALIYLLLLSKPLGLCTLMICFTLRIIMLLYGR 95
            ++++  LS  L L T M    + ++  +YG+
Sbjct: 313 VVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGK 344

[Close]

BLAST of Lag0026637 vs. ExPASy Swiss-Prot
Match: Q9NP78 (ABC-type oligopeptide transporter ABCB9 OS=Homo sapiens OX=9606 GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.6e-05
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 3   LMVRLEPWPFILYEIWDISFFDSETIGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGG 62
           L +RL    F      + SFFD    GDL SRL +D   VS ++  ++N+ LRN ++  G
Sbjct: 257 LNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTG 316

Query: 63  ALIYLLLLSKPLGLCTLMICFTLRIIMLLYGR 95
            ++++  LS  L L T M    + ++  +YG+
Sbjct: 317 VVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGK 348

The following BLAST results are available for this feature:

BLAST of Lag0026637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945847.1	1.7e-29	89.74	ABC transporter B family member 26, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_022945848.1	1.7e-29	89.74	ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita moschata...	[more]
XP_008446165.1	6.3e-29	89.74	PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis...	[more]
XP_008446166.1	6.3e-29	89.74	PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis...	[more]
XP_004135488.1	6.3e-29	89.74	ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >...	[more]

BLAST of Lag0026637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RY46	3.0e-26	77.33	ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
Q9JJ59	5.0e-05	32.61	ABC-type oligopeptide transporter ABCB9 OS=Mus musculus OX=10090 GN=Abcb9 PE=2 S...	[more]
Q9QYJ4	5.0e-05	32.61	ABC-type oligopeptide transporter ABCB9 OS=Rattus norvegicus OX=10116 GN=Abcb9 P...	[more]
Q9NP78	6.6e-05	32.61	ABC-type oligopeptide transporter ABCB9 OS=Homo sapiens OX=9606 GN=ABCB9 PE=1 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036640	ABC transporter type 1, transmembrane domain superfamily	GENE3D	1.20.1560.10	ABC transporter type 1, transmembrane domain	coord: 18..98 e-value: 1.2E-14 score: 56.1
IPR036640	ABC transporter type 1, transmembrane domain superfamily	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 19..95
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 19..95 e-value: 1.9E-11 score: 44.1
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 19..100 score: 14.135007
None	No IPR available	PANTHER	PTHR24222:SF64	ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC	coord: 18..97
None	No IPR available	PANTHER	PTHR24222	ABC TRANSPORTER B FAMILY	coord: 18..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026637.1	Lag0026637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding