Lag0026617 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026617
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 39687861 .. 39688422 (+)
RNA-Seq ExpressionLag0026617
SyntenyLag0026617
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGGGAGGCGTTTCCCAACAGGGGACTGCTTACGGATTCAACCGAGTGACCAAGGGAGCGTTGTGTATGGAGACCGCCCACTAATAGGAAGCTGAAACTTAATATCGATGCTTCTGTAAGGCCGGATACAGGGGAAGCAAGGGGTGGCTGTGTGCTGCGTGGGGCTGATGGTGAGGTCTTTATGGCAACCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTATGTATAAAGGGGTCCAACTTGCTCGACAGTTGGGGTTTGCATAATTTGTGGTGGAGACTGATTCTCTGAGGTTGGTCAGAATCCTACATGGTGAGCTGCATGATGTGTCGGAAGTGGGGTTGCTGATGGATGACATTCGAGGAATCCTCCGTCCTTGGGACAATGGTAAGGTTTTGTTTACATCACGTCAGGGAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGATCGTGTTTGGCTTGAGGAGTGGCCTAGCGAAATTGCGGACGTCCTGAGGAGTGATGTTGTTTCAGCTGCATGA

mRNA sequence

ATGTTGGTGGGAGGCGTTTCCCAACAGGGGACTGCTTACGGATTCAACCGAGTGACCAAGGGAGCGTTGCCGGATACAGGGGAAGCAAGGGGTGGCTGTGTGCTGCGTGGGGCTGATGGTGAGGTCTTTATGGCAACCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTATGTATAAAGGGGTCCAACTTGCTCGACAGTTGGGAATCCTACATGGTGAGCTGCATGATGTGTCGGAAGTGGGGTTGCTGATGGATGACATTCGAGGAATCCTCCGTCCTTGGGACAATGGTAAGGTTTTGTTTACATCACGTCAGGGAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGATCGTGTTTGGCTTGAGGAGTGGCCTAGCGAAATTGCGGACGTCCTGAGGAGTGATGTTGTTTCAGCTGCATGA

Coding sequence (CDS)

ATGTTGGTGGGAGGCGTTTCCCAACAGGGGACTGCTTACGGATTCAACCGAGTGACCAAGGGAGCGTTGCCGGATACAGGGGAAGCAAGGGGTGGCTGTGTGCTGCGTGGGGCTGATGGTGAGGTCTTTATGGCAACCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTATGTATAAAGGGGTCCAACTTGCTCGACAGTTGGGAATCCTACATGGTGAGCTGCATGATGTGTCGGAAGTGGGGTTGCTGATGGATGACATTCGAGGAATCCTCCGTCCTTGGGACAATGGTAAGGTTTTGTTTACATCACGTCAGGGAAACAAGGTGGCGCATGTTCTGGCTAGCTTGGCCTTTTCATATGTTGATCGTGTTTGGCTTGAGGAGTGGCCTAGCGAAATTGCGGACGTCCTGAGGAGTGATGTTGTTTCAGCTGCATGA

Protein sequence

MLVGGVSQQGTAYGFNRVTKGALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVDRVWLEEWPSEIADVLRSDVVSAA
Homology
BLAST of Lag0026617 vs. NCBI nr
Match: KAF7802400.1 (uncharacterized protein G2W53_041511 [Senna tora])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 43/146 (29.45%), Postives = 76/146 (52.05%), Query Frame = 0

Query: 25  DTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGI-------- 84
           D G+ R GC++R   G    A    +  C+SV++AE  A+Y+G+ +A+++ I        
Sbjct: 623 DGGQTRVGCIIRDYMGRCLAAMTKEITGCYSVEMAEALAVYEGMVVAKRMSILNVLVEGD 682

Query: 85  -------LHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVD 144
                  L+GE  D + V  ++ DI  +   + +    +  R+ NKVAH+LA    ++  
Sbjct: 683 SASVIKLLNGEGMDCTYVSFIIKDILQLCSSFRSYSFNWVRREANKVAHILAHDPVAFPS 742

Query: 145 -----RVWLEEWPSEIADVLRSDVVS 151
                 VWLE++PS I + L+SD+++
Sbjct: 743 DNSGILVWLEDYPSLICNALKSDILT 768

BLAST of Lag0026617 vs. NCBI nr
Match: KAF7837133.1 (uncharacterized protein G2W53_005615 [Senna tora])

HSP 1 Score: 75.1 bits (183), Expect = 5.8e-10
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 0

Query: 27  GEARG--GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQL---------- 86
           G+ +G  GCV+R   G    A    +Q   S DL E +A  KG++LA+ L          
Sbjct: 180 GQGKGGIGCVVRNFQGSCLAAFAKRIQNIESPDLLEAYAFLKGLELAKNLRCDNIILEGE 239

Query: 87  -----GILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVD 146
                 ++HG   ++S +G+++DDIR  ++ +   K+ + SR  N VA  +A+ A +  +
Sbjct: 240 AKKVVDLIHGSSQNLSHMGMIVDDIRKGMKNFSRVKIQWVSRNSNAVADRIANFACNLDN 299

Query: 147 -RVWLEEWPSEIADVLRSD 148
            +VWL+++P  I+DVL +D
Sbjct: 300 SQVWLKDFPPFISDVLIND 318

BLAST of Lag0026617 vs. NCBI nr
Match: XP_021716820.1 (uncharacterized protein LOC110684687 [Chenopodium quinoa])

HSP 1 Score: 74.7 bits (182), Expect = 7.6e-10
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 22  ALPDTGEARGGCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLA---------- 81
           A+ D      G V+R A GEV +ATCL L+  + VD+AE  A+   +++A          
Sbjct: 156 AIFDNSAVGLGGVMRDALGEVVVATCLCLRSKYEVDVAEALALRHSLRIALESEFRKVCL 215

Query: 82  -----RQLGILHGELHDVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFS 141
                +    L       + +G++++DI  + R   +    F  R GN  AH LA L+ S
Sbjct: 216 ETDCMKVFSHLTKGCAPATILGMVINDIMQLARGCQSCSFSFVKRSGNGAAHALAKLSSS 275

Query: 142 YVD-RVWLEEWPSEIADVLRSDVVSA 152
           Y D RVW+EE PSEI+  + +D+ SA
Sbjct: 276 YGDLRVWMEEVPSEISPFVMADLASA 301

BLAST of Lag0026617 vs. NCBI nr
Match: XP_021739472.1 (uncharacterized protein LOC110705848 [Chenopodium quinoa])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 0

Query: 32  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGIL-------HGELH-- 91
           G V+R + G+V  ATCL +   + VD+ E  AM   + +A + G L       + +LH  
Sbjct: 131 GGVMRDSVGDVVAATCLQVAGSFDVDVVEAMAMRHALVIAMESGFLRVCLETDNIKLHYG 190

Query: 92  ------DVSEVGLLMDDIRGILRPWDNGKVLFTSRQGNKVAHVLASLAFSYVD-RVWLEE 149
                 D++  GL+  DI  +          F  R GN+VAH LA L+  +V  RVWLEE
Sbjct: 191 LSKQKEDLTAFGLITKDILKLANSCHECSFAFVKRTGNQVAHSLAKLSSKFVSLRVWLEE 250

BLAST of Lag0026617 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-09
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 0

Query: 32  GCVLRGADGEVFMATCLSLQRCWSVDLAEGWAMYKGVQLARQLGILHGELH--------- 91
           G ++R + G V++     L R   VD  EG+A+Y+G+ LA + G +  ++          
Sbjct: 130 GVIIRDSTGLVYLTAIRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNL 189

Query: 92  ------DVSEVGLLMDDIRGILRPW-DNGKVLFTSRQGNKVAHVLASLAFSYVD-RVWLE 148
                 D SEVG+L   I+  L    +     FT R GN  AH+LA LA +    ++W+E
Sbjct: 190 LTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVE 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7802400.14.5e-1029.45uncharacterized protein G2W53_041511 [Senna tora][more]
KAF7837133.15.8e-1031.65uncharacterized protein G2W53_005615 [Senna tora][more]
XP_021716820.17.6e-1033.56uncharacterized protein LOC110684687 [Chenopodium quinoa][more]
XP_021739472.12.2e-0934.59uncharacterized protein LOC110705848 [Chenopodium quinoa][more]
XP_022150944.12.2e-0933.83uncharacterized protein LOC111018973 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 25..78
e-value: 6.4E-8
score: 32.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026617.1Lag0026617.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity