Lag0026508 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026508
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr10: 38141233 .. 38141541 (-)
RNA-Seq ExpressionLag0026508
SyntenyLag0026508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCAAATTCCGAGTTAATGGTATGGTGAAAATTAGAAGAGAGCTTCAATTTGATTGTGGTATTGAAGTTCCAAGTATGGGACAAAGTGGTGGTTTGATGCTTCTGTGGAATCAAGAGACGGACGTAGTAATTCGGTCTTATTCAAGGGGACATATCGATGCGATAATAAAAGACACAAACAGGAGTTGGAGATTTACAGGAGTCTATGGGAATCCTAACCGAGAGTTTCGACATGAGACGTGGAATCTGCTGAAAAGATTAAGAGTGGACTCAGAAATCCCTTGGATTCTAGGCGGTGATTGA

mRNA sequence

ATGGAAACCAAATTCCGAGTTAATGGTATGGTGAAAATTAGAAGAGAGCTTCAATTTGATTGTGGTATTGAAGTTCCAAGTATGGGACAAAGTGGTGGTTTGATGCTTCTGTGGAATCAAGAGACGGACGTAGTAATTCGGTCTTATTCAAGGGGACATATCGATGCGATAATAAAAGACACAAACAGGAGTTGGAGATTTACAGGAGTCTATGGGAATCCTAACCGAGAGTTTCGACATGAGACGTGGAATCTGCTGAAAAGATTAAGAGTGGACTCAGAAATCCCTTGGATTCTAGGCGGTGATTGA

Coding sequence (CDS)

ATGGAAACCAAATTCCGAGTTAATGGTATGGTGAAAATTAGAAGAGAGCTTCAATTTGATTGTGGTATTGAAGTTCCAAGTATGGGACAAAGTGGTGGTTTGATGCTTCTGTGGAATCAAGAGACGGACGTAGTAATTCGGTCTTATTCAAGGGGACATATCGATGCGATAATAAAAGACACAAACAGGAGTTGGAGATTTACAGGAGTCTATGGGAATCCTAACCGAGAGTTTCGACATGAGACGTGGAATCTGCTGAAAAGATTAAGAGTGGACTCAGAAATCCCTTGGATTCTAGGCGGTGATTGA

Protein sequence

METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD
Homology
BLAST of Lag0026508 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 2   ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDT 61
           ETK       + +REL FDC + V S G+SGGLMLLWN +++V I+S S GHID+II D 
Sbjct: 36  ETKGNPTLEGRAKRELSFDCCVSVASTGKSGGLMLLWNSDSNVRIQSMSPGHIDSIITDK 95

Query: 62  NRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD 103
             SWRFTG YGNP    R  +W LL+RL    ++PWI+GGD
Sbjct: 96  YGSWRFTGFYGNPCTYKRSASWKLLERLARMMDLPWIIGGD 136

BLAST of Lag0026508 vs. NCBI nr
Match: XP_042988712.1 (uncharacterized protein LOC122316247 [Carya illinoinensis])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 2   ETKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIKDT 61
           ETK  V  M  ++R L ++C   V S G+SGGL L+W +ET++ ++SYS+ HIDA+I + 
Sbjct: 36  ETKLHVTKMECVKRLLGYECCFAVSSEGRSGGLALMWQEETNLNVQSYSKNHIDALIHNA 95

Query: 62  NR--SWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD 103
                W+FTGVYG+P+ E R ETWN ++ LR    +PW++ GD
Sbjct: 96  EHDGQWQFTGVYGHPDTELRQETWNTIRSLRGTVSVPWLVCGD 138

BLAST of Lag0026508 vs. NCBI nr
Match: KAA3468943.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAIIK- 60
           METK   + M ++RR+  F CG+EV + G  GGL L W ++  V +RS+S+ HID IIK 
Sbjct: 1   METKLNKSRMERVRRKCGFICGVEVEAEGSRGGLCLAWKEDIKVTLRSFSKWHIDVIIKE 60

Query: 61  -DTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD 103
            D    WRFTG+YG+P  + ++  WNLLKRL  +   PW++ GD
Sbjct: 61  DDIEGEWRFTGIYGSPYLKDKNIVWNLLKRLAREDRYPWLVEGD 104

BLAST of Lag0026508 vs. NCBI nr
Match: XP_023871998.1 (uncharacterized protein LOC111984613 [Quercus suber])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII-- 60
           METK  V     I+  L+   G+ VPS+ +SGGL+LLW +E  V ++SYS  HIDAI+  
Sbjct: 35  METKLVVTEFDSIKEGLKRSQGLVVPSIRRSGGLVLLWKKELSVSVQSYSESHIDAIVNQ 94

Query: 61  KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD 103
            D ++ WRFTG YGNP+   R E+W LLKRL  ++ +PW+  GD
Sbjct: 95  NDGSQKWRFTGFYGNPDTSRREESWVLLKRLSSNNSLPWVCAGD 138

BLAST of Lag0026508 vs. NCBI nr
Match: XP_023903659.1 (uncharacterized protein LOC112015491 [Quercus suber])

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-20
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   METKFRVNGMVKIRRELQFDCGIEVPSMGQSGGLMLLWNQETDVVIRSYSRGHIDAII-- 60
           METK  V     I+  L+   G+ VPS+ +SGGL+LLW +E  V ++SYS  HIDAI+  
Sbjct: 35  METKLVVAEFDSIKEGLKRSQGLVVPSIRRSGGLVLLWKKELSVSVQSYSESHIDAIVNQ 94

Query: 61  KDTNRSWRFTGVYGNPNREFRHETWNLLKRLRVDSEIPWILGGD 103
            D ++ WRFTG YGNP+   R E+W LLKRL  ++ +PW+  GD
Sbjct: 95  NDGSQKWRFTGFYGNPDTSRREESWVLLKRLSSNNSLPWVCAGD 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157437.12.6e-2253.47uncharacterized protein LOC111024135 [Momordica charantia][more]
XP_042988712.11.1e-2045.63uncharacterized protein LOC122316247 [Carya illinoinensis][more]
KAA3468943.11.9e-2046.15reverse transcriptase [Gossypium australe][more]
XP_023871998.12.4e-2048.08uncharacterized protein LOC111984613 [Quercus suber][more]
XP_023903659.14.2e-2048.08uncharacterized protein LOC112015491 [Quercus suber][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..102
e-value: 7.9E-6
score: 27.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 26..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026508.1Lag0026508.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity