Lag0026445 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026445
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionregulation of nuclear pre-mRNA domain-containing protein 1B-like
Locationchr10: 36873023 .. 36874805 (-)
RNA-Seq ExpressionLag0026445
SyntenyLag0026445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGTTTATCTTTGATATCGAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCTAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTACGTTTATGATCATGGGGATGAAAGTGGAAAGAAAGCGGTTGCCAGGCTTGTATGTCCTCTTTATACTTGTGTAAAAAAATGATGGCATAAATATTTTTATGTTTTTATTTCTTGAAGCATATTAGTTAACTCTGGGAACATGTTGCTCAAAAGTAAAACATTTTGCATTTGTGGTATCTGTCTTAAAAATTCTTCTCCTCCTTTCTCTCTCCTAAAAAAAATGGTGAAGAAGCAAAATGGAAAAGGCAGGATGGATTCCCTTCATTCAGTTTGACAAGTTTGTATCATAATTATTTCTATCAAGGCTTCTCAAAGATCCAACTTCTTTGTTAATGGCATTGGTAATAAAACTCTCATTTCTACTTATAGCAGTTTTTTGATTATGGTGTTTCATGAGTACCAAGGGTCGATTGACGTTAATTCCTAAAGCTTGTATATTAGTTAGGAACAATCTAGTAATTTCTAGCTATGTGGGTTTAAACTTCAGTTTGAAGCTAGTATGTGGTCCCTTTCCCCTCCCCTTTTGTCCTCCCATTCAGCCATTCCTAGGCGTAAGTTTAGTTTTTTAATTAAATAATTAAATAATTATAATAATATATTTTTTTCTTGTTAATAATATTTTGTTTTGCTAAATAAAGGAATATAGGAACTATAAATCTTGTAAGGCATATATGAATCAATAAAGCTATTAATGAGAGAAGAAAGGGAAATGAGAGACATTTCTTGCAAAAAAAATTTTCATTCTAAAAGCTTATAATGTAGTGGGTATTATTTTCTTGATTCTATTCACCACAGTAAGTATTTTAGAGACAGCGACGGTGGACCTCCTGTTTTCTTTCCATTTGCGATCTTATATTTTTGTTAAATACGACCAAAGAAAAATTTGTGTTACTAGATGTTGACACAAGATTTGATTTCCCTTTCTGTTTCTTGTGCTGGTGGATGTTCCAAGCAAAATTGTAGATCATGTTACACTTGTTGATATTGGAAAATTTAGTAGGTATATGTTGTCCTAATAAGCCTTAGGAAGATTCTCTACACCAGTTGATATTGGAAAATTTAGTAGATATATGTTGTCCTAATAAGTCTTTGGGAAGATTTTATATTTACAAGATTCATATGGAAAAGGGATCCCTGTGACCATTAGAGGTATAGAATATTTTGAATTCATAAGCTAATTTTAGTTTAGATATTATATGGTTGCATGTTATTGAAGTTAGCTTGTCTAATCATAGAGTCCGGGAGAATCTTATTTGTTGTAGGCTGTGTAGATTTATATCCAACTAGCAATAGGAGGATTCATTTTCCTATTTCAGACAAGAAGCTTCAGCTAGAACTTTATCCAATTGATGGCTATATTCTTGATAACTGTTGAAACATTTGAAGAGATCATACTCCTTTCAAGATTGATAACTTGTGAATTTTTCATCTCTTAGAGAGAAAAGGAAGAGCTAGAAGCCCCATTCACTTTGGAAGAGATTAAAAGATTGGTGTTTCAATTTGACGGGAATATGTCCCCTGGTTCGGATGGATTCACAATGTCTTTCTCTTAG

mRNA sequence

ATGAATCTGTTTATCTTTGATATCGAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCTAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTACGTTTATGATCATGGGGATGAAAGTGGAAAGAAAGCGGTTGCCAGGCTTAGAGAAAAGGAAGAGCTAGAAGCCCCATTCACTTTGGAAGAGATTAAAAGATTGGTGTTTCAATTTGACGGGAATATGTCCCCTGGTTCGGATGGATTCACAATGTCTTTCTCTTAG

Coding sequence (CDS)

ATGAATCTGTTTATCTTTGATATCGAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCTAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGAGCAGCGTGTTTCATTTCTGTATTTGGCGAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAATGAATTCTGGAAAGTTCTTCCTGGTGCTCTCAAGTACGTTTATGATCATGGGGATGAAAGTGGAAAGAAAGCGGTTGCCAGGCTTAGAGAAAAGGAAGAGCTAGAAGCCCCATTCACTTTGGAAGAGATTAAAAGATTGGTGTTTCAATTTGACGGGAATATGTCCCCTGGTTCGGATGGATTCACAATGTCTTTCTCTTAG

Protein sequence

MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRLVFQFDGNMSPGSDGFTMSFS
Homology
[Close]
BLAST of Lag0026445 vs. NCBI nr
Match: KAG7027736.1 (Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MNLFIFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKG 60
          MNLF FDIELALSRWCISHRKKAKQIVETWDKLFNSSQK+QRVSFLYLANDILQNSRRKG
Sbjct: 7  MNLFFFDIELALSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLANDILQNSRRKG 66

Query: 61 SEFVNEFWKVLPGALKYVYDHGDESGKKAVARL 94
          SEFVNEFWKVLP +LKYVYDHGDESGKKAVARL
Sbjct: 67 SEFVNEFWKVLPVSLKYVYDHGDESGKKAVARL 99

[Close]
BLAST of Lag0026445 vs. NCBI nr
Match: XP_004136608.1 (regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >XP_031739391.1 regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >KAE8651160.1 hypothetical protein Csa_001803 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 6.7e-39
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARL 94
           LPGALKYVYDHGDESGKKAVARL
Sbjct: 87  LPGALKYVYDHGDESGKKAVARL 109

[Close]
BLAST of Lag0026445 vs. NCBI nr
Match: XP_008443180.1 (PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 6.7e-39
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LS+WCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARL 94
           LPGALKYVYDHGDESGKKAVARL
Sbjct: 87  LPGALKYVYDHGDESGKKAVARL 109

[Close]
BLAST of Lag0026445 vs. NCBI nr
Match: XP_022152017.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia] >XP_022152018.1 regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 6.7e-39
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARL 94
           LPGALKYVYDHGD+SGKKAVARL
Sbjct: 87  LPGALKYVYDHGDDSGKKAVARL 109

[Close]
BLAST of Lag0026445 vs. NCBI nr
Match: XP_038904543.1 (regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 11  ALSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 70
           +LSRWCISHRKKAKQIVETWDK FNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV
Sbjct: 27  SLSRWCISHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKV 86

Query: 71  LPGALKYVYDHGDESGKKAVARL 94
           LPGALKYVYDHGDE GKKAVARL
Sbjct: 87  LPGALKYVYDHGDEGGKKAVARL 109

[Close]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match: Q9NQG5 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9606 GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-15
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 72  PGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRLVFQFDGNMSP 122
             A  +V    DE  KK + RL    +  + +  E I++L    + + SP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSP 135

[Close]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match: Q9CSU0 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=10090 GN=Rprd1b PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-15
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 0 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK A  IV  W +    ++  ++++FLYLAND++QNS+RKG EF  EF  VL
Sbjct: 26  LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85

Query: 72  PGALKYVYDHGDESGKKAVARLREKEELEAPFTLEEIKRLVFQFDGNMSP 122
             A  +V    DE  KK + RL    +  + +  E I++L    + + SP
Sbjct: 86  VDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSP 135

[Close]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match: Q0P5J9 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 0 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEIKRLVF 114
             A K+V    DES KK + R   + E+  +     LE++K+ ++
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALY 130

[Close]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match: Q96P16 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9606 GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 0 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEIKRLVF 114
             A K+V    DES KK + R   + E+  +     LE++K+ ++
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALY 130

[Close]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match: Q5R8Y3 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii OX=9601 GN=RPRD1A PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-14
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = 0 

Query: 12  LSRWCISHRKKAKQIVETWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 71
           LS W I HRK ++ IV  W++    ++  ++++FLYLAND++QNS+RKG EF  +F  V+
Sbjct: 26  LSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGPEFTKDFAPVI 85

Query: 72  PGALKYVYDHGDESGKKAVAR---LREKEELEAPFTLEEIKRLVF 114
             A K+V    DES KK + R   + E+  +     LE++K+ ++
Sbjct: 86  VEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALY 130

The following BLAST results are available for this feature:
BLAST of Lag0026445 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027736.14.5e-4395.70Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita ... [more]
XP_004136608.16.7e-3997.59regulation of nuclear pre-mRNA domain-containing protein 1B [Cucumis sativus] >X... [more]
XP_008443180.16.7e-3997.59PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Cuc... [more]
XP_022152017.16.7e-3997.59regulation of nuclear pre-mRNA domain-containing protein 1B-like [Momordica char... [more]
XP_038904543.14.4e-3896.39regulation of nuclear pre-mRNA domain-containing protein 1B-like [Benincasa hisp... [more]
BLAST of Lag0026445 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9NQG57.0e-1539.09Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9... [more]
Q9CSU07.0e-1539.09Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=1... [more]
Q0P5J91.6e-1438.10Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=991... [more]
Q96P161.6e-1438.10Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9... [more]
Q5R8Y31.6e-1438.10Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Pongo abelii OX=9... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006569CID domainSMARTSM00582558neu5coord: 3..113
e-value: 5.6E-14
score: 62.5
IPR006569CID domainPFAMPF04818CIDcoord: 11..94
e-value: 1.3E-23
score: 83.6
IPR006569CID domainPROSITEPS51391CIDcoord: 1..119
score: 28.886271
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 8..110
e-value: 1.2E-26
score: 95.2
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 10..95
NoneNo IPR availablePANTHERPTHR12460:SF21RNA POLYMERASE II-BINDING DOMAIN PROTEINcoord: 11..95
NoneNo IPR availablePANTHERPTHR12460CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEINcoord: 11..95
NoneNo IPR availableCDDcd16981CID_RPRD_likecoord: 12..93
e-value: 2.34517E-40
score: 129.238

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026445.1Lag0026445.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031124 mRNA 3'-end processing
cellular_component GO:0016591 RNA polymerase II, holoenzyme
molecular_function GO:0000993 RNA polymerase II complex binding