Lag0026376 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026376
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr10: 35689592 .. 35690353 (-)
RNA-Seq ExpressionLag0026376
SyntenyLag0026376
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAAGACGAAGCGTCAAGGTGCCGAGCCTTCACGCTAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTTTGTTTAAAGAATTGGCCCGAGCGTTTGTTACGCAATTCCTCGGGGCCCAGAGCTGACAGAAGCCTCAGATCAATTTGCTAACAGTAAAGCAAGGGCCCCGAGAAAGCTTGAAGGATTATATTAACAGATTTAATAACGAAGTTTTGTAGGTAGAAGGCTATGACGATGGATTTGCCTTGACTGTTGTGATTTTAGGTCTGTAGGGTGAAAGACTGCTCAACTCGATCGGCGAGAGCCAGCCACGGACATACGCGGAATTCATGACCCTAGCACAAAGGTACATAAGCGCCGAGGAATTGCTGAGGTCCAAACAAGAAGAGAGAGAGGCCGAAGCCGGCAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGATCGGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGGTTTGACAGGTGTACACCACTAACAACTCCACTTGAATAGACCCTAGTCACAATACAGGATACAAACCTAATGAGGTGCTCAGAAAAATTGAGGTCGGATCCAGACAGGAGGAATCGGAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCTGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCTAG

mRNA sequence

ATGGCTAAAAGACGAAGCGTCAAGGTGCCGAGCCTTCACGCTAACACTCACAGGTTTGGCAAGGCAATGGGTGAAAGACTGCTCAACTCGATCGGCGAGAGCCAGCCACGGACATACGCGGAATTCATGACCCTAGCACAAAGGTACATAAGCGCCGAGGAATTGCTGAGGTCCAAACAAGAAGAGAGAGAGGCCGAAGCCGGCAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGATCGGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGAAAAATTGAGGTCGGATCCAGACAGGAGGAATCGGAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCTGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCTAG

Coding sequence (CDS)

ATGGCTAAAAGACGAAGCGTCAAGGTGCCGAGCCTTCACGCTAACACTCACAGGTTTGGCAAGGCAATGGGTGAAAGACTGCTCAACTCGATCGGCGAGAGCCAGCCACGGACATACGCGGAATTCATGACCCTAGCACAAAGGTACATAAGCGCCGAGGAATTGCTGAGGTCCAAACAAGAAGAGAGAGAGGCCGAAGCCGGCAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGATCGGAGACTAGGGAGCCTCGGGGTCGTGCGGAACCAAAAGCCAGAAAAATTGAGGTCGGATCCAGACAGGAGGAATCGGAACAAATACTGCATGTTCCACAGAGACCACGGTCACACAACCTGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCTAG

Protein sequence

MAKRRSVKVPSLHANTHRFGKAMGERLLNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEEREAEAGKSSPRPMAEADRRLGSLGVVRNQKPEKLRSDPDRRNRNKYCMFHRDHGHTTWECIQLRDEIEALIREGYLKEFVGNDRS
Homology
BLAST of Lag0026376 vs. NCBI nr
Match: MQM14562.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-16
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 0

Query: 27  LLNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEEREAEAGKSSPRPM-AEADRRLGS- 86
           L  ++G  QP T AE +++AQR+ + EE L + + E+  ++ K  P    ++ DR+ G  
Sbjct: 565 LQRTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGSDRDRKKGRR 624

Query: 87  ------------------------LGVVRNQK----PEKLRSDPDRRNRNKYCMFHRDHG 143
                                   L  +RN+     P+++RSDP +R++NKYC FHRDHG
Sbjct: 625 NGDSPRRPRPFTNYTPLTVAPEQILAEIRNEAFVRWPQRMRSDPRKRDQNKYCRFHRDHG 684

BLAST of Lag0026376 vs. NCBI nr
Match: MQM13883.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 56/145 (38.62%), Postives = 80/145 (55.17%), Query Frame = 0

Query: 28  LNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEEREAEAGKSSPRPM-AEADRRLGS-- 87
           L ++G  QP T AE +++AQR+ + EE L + + E+  ++ K  P    ++ DR+ G   
Sbjct: 406 LLTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGSDRDRKKGRRN 465

Query: 88  -----------------------LGVVRNQK----PEKLRSDPDRRNRNKYCMFHRDHGH 143
                                  L  +RN+     P+++RSDP RR++NKYC FHRDHGH
Sbjct: 466 GDSSRRPRPFTNYTPLIVAPEQILAEIRNEAYVRWPQRMRSDPRRRDQNKYCRFHRDHGH 525

BLAST of Lag0026376 vs. NCBI nr
Match: MQM08867.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = 0

Query: 11  SLHANTHRFGKAMGERLLNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEEREAEAGKS 70
           SL A   + G+A+ + +  ++G  QP T AE +++AQR+ + EE L + + E+  +  K 
Sbjct: 310 SLLAVRQKKGEALWDFVKRTLGVQQPATLAELLSIAQRHAACEESLAAGRAEQGEQFDKK 369

Query: 71  SPRPM-AEADRRLGS-------------------------LGVVRNQK----PEKLRSDP 130
            P    ++ DR+ G                          L  +RN+     P+++RSDP
Sbjct: 370 RPSDNGSDRDRKKGRRNDDSPRRPPPFTNYTPLTVAPEQILAEIRNESYVRWPQRMRSDP 429

Query: 131 DRRNRNKYCMFHRDHGHTTWECIQLRDEIEALIREGYLKEFV 143
            RR++NKYC FHR+HGH T EC QL+DEIE LI+ GYL  F+
Sbjct: 430 RRRDQNKYCRFHRNHGHDTSECRQLKDEIEDLIKRGYLGWFI 471

BLAST of Lag0026376 vs. NCBI nr
Match: MQL96670.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 27  LLNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEEREAEAGKSSPRPM-AEADRRLGS- 86
           L  ++G  QP T AE +++AQR+ + EE L + + E+  ++ K  P    ++ DR+ G  
Sbjct: 378 LQRTLGVQQPATLAELLSIAQRHAACEESLAASRAEQGEQSDKKRPSDNGSDRDRKKGRR 437

Query: 87  ------------------------LGVVRNQK----PEKLRSDPDRRNRNKYCMFHRDHG 143
                                   L  +RN+     P+++RSDP +R++NKYC FHRDHG
Sbjct: 438 NGDSPRRPRPFTNYTPLTVAPEQILAEIRNEAFVRWPQRMRSDPRKRDQNKYCRFHRDHG 497

BLAST of Lag0026376 vs. NCBI nr
Match: XP_030958631.1 (uncharacterized protein LOC115980538 [Quercus lobata])

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-15
Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 0

Query: 28  LNSIGESQPRTYAEFMTLAQRYISAEELLRSKQEER-------EAEAGKSSPRP------ 87
           ++ + E +P+T AE +  AQ +++AE+ + +K+ +R        A   + +PRP      
Sbjct: 240 IHKLYEKEPQTMAELVHSAQNFMNAEDAIIAKKRKRAERMEAHPARHSEQAPRPKKGRTE 299

Query: 88  -MAEAD-RRLGSLGVVRN---------------------QKPEKLRSDPDRRNRNKYCMF 147
              E D R+ G LG  +N                     + PEK++ DP++RN+NKYC F
Sbjct: 300 DRKERDGRKTGPLGRSQNYTPLNAPLNQVLMQIKDDPSLKWPEKMKGDPNKRNKNKYCRF 359

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MQM14562.16.9e-1637.67hypothetical protein [Colocasia esculenta][more]
MQM13883.11.2e-1538.62hypothetical protein [Colocasia esculenta][more]
MQM08867.12.0e-1535.80hypothetical protein [Colocasia esculenta][more]
MQL96670.12.0e-1537.67hypothetical protein [Colocasia esculenta][more]
XP_030958631.12.0e-1536.54uncharacterized protein LOC115980538 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026376.1Lag0026376.1mRNA