Lag0026356 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026356
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 35400833 .. 35402942 (+)
RNA-Seq ExpressionLag0026356
SyntenyLag0026356
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTACATGGACGATTTAGGGTCACATCGTCTATACCATCTATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGGTACCCAACCTATCCCTATACTATAGACTGTTTTGGCTATTACTCAAGCTTGATCCATTTTTATGTCTCTACATAAAGCTCAAGTATTCATCCTATAGCCATGGATCTTAGTTTATTGGATTTGGGTTATTATATGTGTAATTTACTTTATTCAGTAATAACTTTACTAATTAATCTCGATAACGCCTTTATCGAATAAGTATGTATAATTCGTTTAACATTCACTATCTACGAGTTTTAGGACACAATCCCAACAGAAAAAGATGGGCGAGTGTTCAAGGTTAATGGATAGCGAGTGAAGCATTATTGGGGTGAAGAATTCCGTTCGAAATATCCTTCCCTAAAATTGGTCGATGAATAAGTGAACAAGAGTTTTGCGGGAACATTTCATATTGCAATATTTTTAGCTCCCAGTGTTGTTGTGATTTTATTTTATTTCGTGGATTTTATTTTATTCTGGTTTGAATTAATTTGAATTAGATTTTATTGATTTCAATTTTATCTGATTTATTTTAATTCGTTGGTATTTTTAACTTTCGTAGATTTTATTTTCACATTTATTTTTAATTTGGCCGATTTAATTTTTAATTTAATCGGATTTATCTTTGAGTTAGTTGTATTTTCATTATTTAAATTTCTGTTTAGATTATAATATATTTTCCTTATTTATTCGGCTAAAAATAATAAGATTTGATTTGATTTTGGGGGTTTGAATTTAAATTGAATTTTTCCGTGCAAAAGATTCTTCTAGAAGGAGATCTTTGTTGACTAGTTTGTTTTTGCAATCTCTTGGTTAGAGCATAATATCATCAGAATTTATGGATTTGGTTAAGAATTAAATATTTTACCGTTTGGATTTTAAATTTTTTGTGGGCAGGTAAAATGCGTGGGCATCTGGTGCTTCCACGTGTCGCGCAGGGGAGATCCAACGGTCTAGCCGTTGGACAGCACATCAACAATTACCAGGAGATTATTTTACCGAATGTGGGAATTAATTTCCCATGATTACATGCAGTTGAACGGTAATATTTTGATTAATGGAGGAATTTATTTCGGTTAGTATTGCATTTGTTGGAGCTCTATTTAAATCAAACCCTGGTACGATTCTCTTTTCATTTTCTTCTTCCACCGTGCTTTTCTTTCTACTCTCTTTCTTTTCTTGCGAGTGCAAAGAAATTTCTTATTCTAAATGGCAAAAACGAGAGGAAGAAAAGAGAGAGAAGTGGAGGAGGATGTACCTGTTACGCCTGAAGCTCCGAAGAAGAAGGCGAAGAAGAAAAGAACACATGCAGATAGGGAAGCCAAGCAGCTTAAAAGACTAACAAGAAGCTGAAGTCTCTGAAGTATTACAGAAAGTCAACAAGGACATTACAGAAGAAGTAGGAGCTGAGGAAGAACCAAATGATTTTGAAAAAAAAAGATCTTGAGAAGATTGTTAAAACAGAGCAAGAGAGTCAAGATTAAAGGCAGTAACGGATTTGCGAGAGCAAGGTAATAATGAAACAGTAATTCAAAAGGTCCTCGAAGAGATAGTGCAGGATCCGCTACGTCGTCGCCGTTGCAAGCAGAAAGCAGGGTGGATTAAAAGGATTCGGACTGACACTTCATCTCCTCCTTCGACTGAATCGAAAAAAGAAGAACCTGAAAATCAAGAAGAAGCCGAGAAGGAAGCTGTAGAAGGTGAAATTGAAAAGAGGACTCATGAAGATAAGGGCAAAGGTATAGTAGGAGTCGAGGTTGAAGCAGAAGTGGCAAGGTTAGAGGAAAAGAGGTTGCCATATGAACGCTTCTGCAATCACTTTGCCAGGGCAAAATACATTGACATGTTGAAGAGGGACTTTCTATTTGAAAGGGGGTTCAATGGTGATCTTCCAAACTTTTTAAGAGCAGGCATCACGAACCATGGCTGGGAGTTGTTCTGTTCCATGCCAGAACCCGTGAACTTGCAGGTGGTGCGCGAGTTCTACACGAACATCGACAACGAAGAAGGTTTTCAAGTGATTATTCGTGGAGTAGTTGTCGACTAA

mRNA sequence

ATGTCTCTACATGGACGATTTAGGGTCACATCGTCTATACCATCTATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGAGCAAGAGAGTCAAGATTAAAGGCAGTAACGGATTTGCGAGAGCAAGGTAATAATGAAACAGTAATTCAAAAGGTCCTCGAAGAGATAGTGCAGGATCCGCTACGTCGTCGCCGTTGCAAGCAGAAAGCAGGGTGGATTAAAAGGATTCGGACTGACACTTCATCTCCTCCTTCGACTGAATCGAAAAAAGAAGAACCTGAAAATCAAGAAGAAGCCGAGAAGGAAGCTGTAGAAGGTGAAATTGAAAAGAGGACTCATGAAGATAAGGGCAAAGGTATAGTAGGAGTCGAGGTTGAAGCAGAAGTGGCAAGGTTAGAGGAAAAGAGGTTGCCATATGAACGCTTCTGCAATCACTTTGCCAGGGCAAAATACATTGACATGTTGAAGAGGGACTTTCTATTTGAAAGGGGGTTCAATGGTGATCTTCCAAACTTTTTAAGAGCAGGCATCACGAACCATGGCTGGGAGTTGTTCTGTTCCATGCCAGAACCCGTGAACTTGCAGGTGGTGCGCGAGTTCTACACGAACATCGACAACGAAGAAGGTTTTCAAGTGATTATTCGTGGAGTAGTTGTCGACTAA

Coding sequence (CDS)

ATGTCTCTACATGGACGATTTAGGGTCACATCGTCTATACCATCTATAAAGTGGGTCGCGTCTCATAGTGTCTCCAGAATAAGAGCAAGAGAGTCAAGATTAAAGGCAGTAACGGATTTGCGAGAGCAAGGTAATAATGAAACAGTAATTCAAAAGGTCCTCGAAGAGATAGTGCAGGATCCGCTACGTCGTCGCCGTTGCAAGCAGAAAGCAGGGTGGATTAAAAGGATTCGGACTGACACTTCATCTCCTCCTTCGACTGAATCGAAAAAAGAAGAACCTGAAAATCAAGAAGAAGCCGAGAAGGAAGCTGTAGAAGGTGAAATTGAAAAGAGGACTCATGAAGATAAGGGCAAAGGTATAGTAGGAGTCGAGGTTGAAGCAGAAGTGGCAAGGTTAGAGGAAAAGAGGTTGCCATATGAACGCTTCTGCAATCACTTTGCCAGGGCAAAATACATTGACATGTTGAAGAGGGACTTTCTATTTGAAAGGGGGTTCAATGGTGATCTTCCAAACTTTTTAAGAGCAGGCATCACGAACCATGGCTGGGAGTTGTTCTGTTCCATGCCAGAACCCGTGAACTTGCAGGTGGTGCGCGAGTTCTACACGAACATCGACAACGAAGAAGGTTTTCAAGTGATTATTCGTGGAGTAGTTGTCGACTAA

Protein sequence

MSLHGRFRVTSSIPSIKWVASHSVSRIRARESRLKAVTDLREQGNNETVIQKVLEEIVQDPLRRRRCKQKAGWIKRIRTDTSSPPSTESKKEEPENQEEAEKEAVEGEIEKRTHEDKGKGIVGVEVEAEVARLEEKRLPYERFCNHFARAKYIDMLKRDFLFERGFNGDLPNFLRAGITNHGWELFCSMPEPVNLQVVREFYTNIDNEEGFQVIIRGVVVD
Homology
BLAST of Lag0026356 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-05
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 130 VARLEEKRLPYERFCNHFARAKYIDMLK-RDFLFERGFNGD------LPNFLRAGITNHG 189
           + R+  K     +F +  A  +Y + ++ R    E+GF GD       P F+   IT H 
Sbjct: 3   IKRVTRKASKAVKFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHN 62

Query: 190 WELFCSMPEPVNLQVVREFYTNIDNEEGFQVIIRGVVV 221
           W+LFC+ PE   + +VREFY N+ N +   V +RGV V
Sbjct: 63  WQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQV 100

BLAST of Lag0026356 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 8.2e-05
Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 130 VARLEEKRLPYERFCNHFARAKYIDMLK-RDFLFERGFNGD------LPNFLRAGITNHG 189
           + R+  K     +  +  A  +Y + ++ R    E+GF GD       P F+   IT H 
Sbjct: 3   IKRVAHKASKAVKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHN 62

Query: 190 WELFCSMPEPVNLQVVREFYTNIDNEEGFQVIIRGVVV 221
           W+LFC+ PE +   +VREFY N+ N +   V +RGV V
Sbjct: 63  WQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVRGVQV 100

BLAST of Lag0026356 vs. NCBI nr
Match: KZM94204.1 (hypothetical protein DCAR_017447 [Daucus carota subsp. sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-04
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 143 FCNHFARAKYIDMLKRDFLFERGF-----NGDLPNFLRAGITNHGWELFCSMPEPVNLQV 202
           F +  AR ++  ++ +  + ERGF     +G+L N     I   GWE FC  PE V L +
Sbjct: 30  FTSDGARTEFQRLMNKSIVKERGFLPTAEDGELLNM----IQERGWESFCEAPEAVPLAI 89

Query: 203 VREFYTNI-DNEEGFQVIIRGVVVD 222
           +REFY N  +N +GF  ++RG+ VD
Sbjct: 90  IREFYANAKENRDGF-TVVRGIRVD 109

BLAST of Lag0026356 vs. NCBI nr
Match: PKC51568.1 (hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis])

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-04
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 143 FCNHFARAKYIDMLKRDFLFERGF-----NGDLPNFLRAGITNHGWELFCSMPEPVNLQV 202
           F +  AR ++  ++ +  + ERGF     +GDL +     I   GWE FC  PE V L +
Sbjct: 30  FTSDGARTEFQRLMNKSIVKERGFLPTAEDGDLLSM----IQERGWESFCEAPEAVPLAI 89

Query: 203 VREFYTNI-DNEEGFQVIIRGVVVD 222
           +REFY N  +N +GF  ++RG+ VD
Sbjct: 90  IREFYANAKENRDGF-TVVRGIRVD 109

BLAST of Lag0026356 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 130 VARLEEKRLPYERFCNHFARAKYIDMLK-RDFLFERGFNGD------LPNFLRAGITNHG 189
           + R+  K     +F +  A  +Y + ++ R    E+GF GD       P F+   IT H 
Sbjct: 3   IKRVTRKASKAVKFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHN 62

Query: 190 WELFCSMPEPVNLQVVREFYTNIDNEEGFQVIIRGVVV 221
           W+LFC+ PE   + +VREFY N+ N +   V +RGV V
Sbjct: 63  WQLFCAHPEDPIVPLVREFYANMTNPDDDTVYVRGVQV 100

BLAST of Lag0026356 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 0

Query: 130 VARLEEKRLPYERFCNHFARAKYIDMLK-RDFLFERGFNGD------LPNFLRAGITNHG 189
           + R+  K     +  +  A  +Y + ++ R    E+GF GD       P F+   IT H 
Sbjct: 3   IKRVAHKASKAVKLKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHN 62

Query: 190 WELFCSMPEPVNLQVVREFYTNIDNEEGFQVIIRGVVV 221
           W+LFC+ PE +   +VREFY N+ N +   V +RGV V
Sbjct: 63  WQLFCAHPEDLIAPLVREFYANMTNPDDDTVYVRGVQV 100

BLAST of Lag0026356 vs. ExPASy TrEMBL
Match: A0A164YA28 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017447 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 143 FCNHFARAKYIDMLKRDFLFERGF-----NGDLPNFLRAGITNHGWELFCSMPEPVNLQV 202
           F +  AR ++  ++ +  + ERGF     +G+L N     I   GWE FC  PE V L +
Sbjct: 30  FTSDGARTEFQRLMNKSIVKERGFLPTAEDGELLNM----IQERGWESFCEAPEAVPLAI 89

Query: 203 VREFYTNI-DNEEGFQVIIRGVVVD 222
           +REFY N  +N +GF  ++RG+ VD
Sbjct: 90  IREFYANAKENRDGF-TVVRGIRVD 109

BLAST of Lag0026356 vs. ExPASy TrEMBL
Match: A0A2N0QKH9 (Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=RhiirA1_483454 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-05
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0

Query: 143 FCNHFARAKYIDMLKRDFLFERGF-----NGDLPNFLRAGITNHGWELFCSMPEPVNLQV 202
           F +  AR ++  ++ +  + ERGF     +GDL +     I   GWE FC  PE V L +
Sbjct: 30  FTSDGARTEFQRLMNKSIVKERGFLPTAEDGDLLSM----IQERGWESFCEAPEAVPLAI 89

Query: 203 VREFYTNI-DNEEGFQVIIRGVVVD 222
           +REFY N  +N +GF  ++RG+ VD
Sbjct: 90  IREFYANAKENRDGF-TVVRGIRVD 109

BLAST of Lag0026356 vs. ExPASy TrEMBL
Match: A0A6A2ZUE4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilonHSYRG00282 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 0

Query: 143 FCNHFARAKYIDMLKRDFLFERGF------NGDLPNFLRAGITNHGWELFCSMPEPVNLQ 202
           F +  A+  Y  +  R   FE GF      N +L + +   +T H W+ F   P PVN  
Sbjct: 15  FVDEAAKEHYQTIKNRRVFFELGFVFSEAENANLGSEVLDVVTKHKWQKFAKHPVPVNAT 74

Query: 203 VVREFYTNIDNEEGFQVIIRGVVV 221
           +V+EFY+NI       V++RG+ +
Sbjct: 75  IVKEFYSNITEPNQHAVMVRGISI 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON65868.12.8e-0534.69hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
PON42276.18.2e-0533.67hypothetical protein PanWU01x14_283280 [Parasponia andersonii][more]
KZM94204.11.4e-0437.65hypothetical protein DCAR_017447 [Daucus carota subsp. sativus][more]
PKC51568.11.8e-0437.65hypothetical protein RhiirA1_483454, partial [Rhizophagus irregularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5CXV11.4e-0534.69Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
A0A2P5B0K04.0e-0533.67Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE... [more]
A0A164YA286.8e-0537.65Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017447 ... [more]
A0A2N0QKH98.9e-0537.65Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=Rhiir... [more]
A0A6A2ZUE49.8e-0432.14Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110733pilon... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026356.1Lag0026356.1mRNA