Lag0026196 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026196
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr10: 31949502 .. 31949825 (+)
RNA-Seq ExpressionLag0026196
SyntenyLag0026196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTTCGTACGAACGCTTTCATGAATAAGTTTCAATATAACCTGACCATCCTTCTTAACAAGCTACAGATTTACCAGTCTTTGTTTAAGAGTAAGGGAACTGTAGAAGGAGCGGCCAACATGGCCCATTCCAAGAGAAAGTTCCAGATGGGTTCATGTTTTGGAACTAAATCTGTACCTCAAGCATATTCTTCAAAGAAAATTTTGAAGAAGAAGGGTGGTAAGGGGAATGCTCTCTCCGCTATTGTTCAAGGCAAGGGAAAGGCCAAGGTTGTGGCCGATAAGGGCAAGTGCTTCCACTGTAATGTGGATGGGCACTAG

mRNA sequence

ATGCAATTTCGTACGAACGCTTTCATGAATAAGTTTCAATATAACCTGACCATCCTTCTTAACAAGCTACAGATTTACCAGTCTTTGTTTAAGAGTAAGGGAACTGTAGAAGGAGCGGCCAACATGGCCCATTCCAAGAGAAAGTTCCAGATGGGTTCATGTTTTGGAACTAAATCTGTACCTCAAGCATATTCTTCAAAGAAAATTTTGAAGAAGAAGGGTGGTAAGGGGAATGCTCTCTCCGCTATTGTTCAAGGCAAGGGAAAGGCCAAGGTTGTGGCCGATAAGGGCAAGTGCTTCCACTGTAATGTGGATGGGCACTAG

Coding sequence (CDS)

ATGCAATTTCGTACGAACGCTTTCATGAATAAGTTTCAATATAACCTGACCATCCTTCTTAACAAGCTACAGATTTACCAGTCTTTGTTTAAGAGTAAGGGAACTGTAGAAGGAGCGGCCAACATGGCCCATTCCAAGAGAAAGTTCCAGATGGGTTCATGTTTTGGAACTAAATCTGTACCTCAAGCATATTCTTCAAAGAAAATTTTGAAGAAGAAGGGTGGTAAGGGGAATGCTCTCTCCGCTATTGTTCAAGGCAAGGGAAAGGCCAAGGTTGTGGCCGATAAGGGCAAGTGCTTCCACTGTAATGTGGATGGGCACTAG

Protein sequence

MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSVPQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH
Homology
BLAST of Lag0026196 vs. NCBI nr
Match: XP_038874988.1 (uncharacterized protein LOC120067510 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 4.4e-20
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 1   MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSV 60
           +QFR NA M K Q+NLT          SL K+KG +E  A++AHSKRKF+ G   GTK+V
Sbjct: 82  LQFRINAMMKKTQFNLT----------SLLKNKGKIEREASVAHSKRKFEKGLSSGTKAV 141

Query: 61  PQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH 108
            Q+ +SKKI K KG KG A +A  +GKGK K + DKGKCFHCNVDGH
Sbjct: 142 SQSSTSKKIQKNKGNKGKAPAAAAKGKGKTK-LPDKGKCFHCNVDGH 177

BLAST of Lag0026196 vs. NCBI nr
Match: KAA0050670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 1   MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSV 60
           +QFR+NA MNK  Y LT LLN+LQ ++SL K KG  +G AN+A S RKF  G  FGTKS+
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGLTFGTKSM 226

Query: 61  PQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH 108
           P +  +KK  KKKGG+GN  + +V  K   K  A KG CFHCN +GH
Sbjct: 227 PSSSGNKKWKKKKGGQGNKAN-LVAAKTTKKAKAAKGICFHCNQEGH 271

BLAST of Lag0026196 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSV 60
           +QFR+NA MNK  Y LT LLN+LQ ++SL K KG  +G AN+A S RKF  GS  GTKS+
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGSTSGTKSM 226

Query: 61  PQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH 108
           P +  SKK  KKKGG+GN  + +   K   K  A KG CFHCN +GH
Sbjct: 227 PSSSGSKKWKKKKGGQGNKAN-LAAAKTTKKAKAAKGICFHCNQEGH 271

BLAST of Lag0026196 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-18
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSV 60
           +QFR+NA MNK  Y LT LLN+LQ ++SL K KG  +G AN+A S RKF  GS  GTKS+
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGSTSGTKSM 226

Query: 61  PQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH 108
           P +  +KK  KKKGG+GN  + +   K   K  A KG CFHCN +GH
Sbjct: 227 PSSSGNKKWKKKKGGQGNKAN-LAAAKTTKKAKAAKGICFHCNQEGH 271

BLAST of Lag0026196 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.0e-18
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MQFRTNAFMNKFQYNLTILLNKLQIYQSLFKSKGTVEGAANMAHSKRKFQMGSCFGTKSV 60
           +QFR+NA MNK  Y LT LLN+LQ ++SL K KG  +G AN+A S RKF  GS  GTKS+
Sbjct: 166 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQ-KGEANVATSTRKFHRGSTSGTKSM 225

Query: 61  PQAYSSKKILKKKGGKGNALSAIVQGKGKAKVVADKGKCFHCNVDGH 108
           P +  +KK  KKKGG+GN  + +   K   K  A KG CFHCN +GH
Sbjct: 226 PSSSGNKKWKKKKGGQGNKAN-LAAAKTTKKAKAAKGICFHCNQEGH 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038874988.14.4e-2056.07uncharacterized protein LOC120067510 [Benincasa hispida][more]
KAA0050670.11.4e-1854.21gag/pol protein [Cucumis melo var. makuwa][more]
KAA0032020.13.1e-1854.21gag/pol protein [Cucumis melo var. makuwa][more]
KAA0044955.17.0e-1853.27gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.17.0e-1853.27gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026196.1Lag0026196.1mRNA