Lag0026178 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026178
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr10: 31645090 .. 31645551 (+)
RNA-Seq ExpressionLag0026178
SyntenyLag0026178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA

mRNA sequence

ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA

Coding sequence (CDS)

ATGACGTTTTCATTTAATCTGAATGGTGTGAAGCAGGGTCATATTATCCCAAGTCGAGGGCTACGACAAGGGGATCCATTATCTCCATACCTATTTTTACTCTGTGCAGAAGGTCTTTCCAGCTTATTACATGGGGCTATGTCACGGAAGCTCACGCCTGGCTTGGCCATTGCGAAACTTAGTCCCCCTATTTCCCACTTGTTCTTCACTGATGACAGCTTGCTACTTTTTATGGCTAAAAGGAGCGAGGTTTCGGCTATTAAGGGGATTTTAGATATGTATGATCATGCTTCTGGGCAATTGATAAATTTTGAGAAGTCAGCGTTGTCTGTTAGCCCAAATACTCCCACGGCTGTTCAAGGGGAGTTGGGGATCTTTTTGGTGTTCCTCCTCTTATGCAATGCCACAAGAAGTATTTGGGTCTCCCAACATTTATGCCTCGATCAAAAACTTCGACCTTGA

Protein sequence

MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQGELGIFLVFLLLCNATRSIWVSQHLCLDQKLRP
Homology
BLAST of Lag0026178 vs. NCBI nr
Match: XP_027090317.1 (uncharacterized protein LOC113711350 [Coffea arabica])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-31
Identity = 68/123 (55.28%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
           +++SFNLNG K G+I PSRG+RQGDPLSPYLF+LC EG S+L++ A+ RK   G+ ++K 
Sbjct: 493 VSYSFNLNGRKVGYIKPSRGIRQGDPLSPYLFILCTEGFSNLINKAVDRKELTGIKVSKD 552

Query: 61  SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
           SP +SHLFF DDSLL   A + EV  IK +++ Y  ASGQ++NFEKSA+  S NTP  ++
Sbjct: 553 SPMVSHLFFADDSLLCCKASKKEVLKIKEVINHYGQASGQVVNFEKSAMFFSKNTPNRIR 612

Query: 121 GEL 124
            E+
Sbjct: 613 KEV 615

BLAST of Lag0026178 vs. NCBI nr
Match: XP_027171561.1 (uncharacterized protein LOC113771144 [Coffea eugenioides])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 0

Query: 1   MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
           +T+SFNLNG K G++ P+RG+RQGDPLSPYLF++CAEGLSSL+H A+  K   G+ I + 
Sbjct: 43  VTYSFNLNGQKVGNVTPTRGIRQGDPLSPYLFIICAEGLSSLIHKAVQGKELTGVKICRD 102

Query: 61  SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
           SP ISHLFF DDSLL   A R E   +K IL  Y +ASGQ++N+EKSAL  S NT   ++
Sbjct: 103 SPVISHLFFADDSLLCCKATRREALKVKSILTKYGNASGQVVNYEKSALFFSKNTKERME 162

Query: 121 GEL 124
            E+
Sbjct: 163 QEI 165

BLAST of Lag0026178 vs. NCBI nr
Match: XP_027157225.1 (uncharacterized protein LOC113758655 [Coffea eugenioides])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 1   MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
           +++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+  +   G+ I + 
Sbjct: 18  VSYSFNLNGQKVGHIQPNRGIRQGDPLSPYLFIICAEGLSCLLHKAVIERELTGIKICRD 77

Query: 61  SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
           SP ISHLFF DDSLL   A + E   +K IL+ Y  ASGQ++NF+KSA+  S NT   ++
Sbjct: 78  SPSISHLFFADDSLLCCKASKLEARKVKSILERYGKASGQVVNFDKSAIFYSKNTTEKIK 137

Query: 121 GEL 124
            E+
Sbjct: 138 EEV 140

BLAST of Lag0026178 vs. NCBI nr
Match: XP_027154988.1 (uncharacterized protein LOC113755115 [Coffea eugenioides])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 68/123 (55.28%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 1   MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
           +++SFNLNG K GHI P+RG+RQGDPLSPYLF++CAEGLS LLH A+  +   G+ I + 
Sbjct: 249 VSYSFNLNGQKVGHIQPNRGIRQGDPLSPYLFIICAEGLSCLLHKAVIERELTGIKICRD 308

Query: 61  SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
           SP ISHLFF DDSLL   A + E   +K IL+ Y  ASGQ++NF+KSA+  S NT   ++
Sbjct: 309 SPSISHLFFADDSLLCCKASKLEARKVKSILERYGKASGQVVNFDKSAIFYSKNTTEKIK 368

Query: 121 GEL 124
            E+
Sbjct: 369 EEV 371

BLAST of Lag0026178 vs. NCBI nr
Match: XP_027120381.1 (uncharacterized protein LOC113737334 [Coffea arabica])

HSP 1 Score: 141.4 bits (355), Expect = 6.7e-30
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 1   MTFSFNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKL 60
           + +SFNLNG K G + PSRG+RQGDPLSPYLF++C EGLS+L+  A+  K   G+ I + 
Sbjct: 483 VAYSFNLNGQKVGRVKPSRGIRQGDPLSPYLFIICTEGLSNLIKKAVDNKHLTGIKICRD 542

Query: 61  SPPISHLFFTDDSLLLFMAKRSEVSAIKGILDMYDHASGQLINFEKSALSVSPNTPTAVQ 120
           SP +SHLFF DDSLL   A + E   +K +L +Y  ASGQ++NF+KSA+ +S N+P  ++
Sbjct: 543 SPMVSHLFFADDSLLCCKASKKEAQKLKEVLRIYGQASGQVVNFDKSAMFLSRNSPKRIR 602

Query: 121 GEL 124
           GE+
Sbjct: 603 GEV 605

BLAST of Lag0026178 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 5  FNLNGVKQGHIIPSRGLRQGDPLSPYLFLLCAEGLSSLLHGAMSRKLTPGLAIAKLSPPI 64
          F +NG  QG + PSRGLRQGDPLSPYLF+LC E LS L   A  +   PG+ ++  SP I
Sbjct: 12 FIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRI 71

Query: 65 SHLFFTDDS 74
          +HL F DD+
Sbjct: 72 NHLLFADDT 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_027090317.12.7e-3155.28uncharacterized protein LOC113711350 [Coffea arabica][more]
XP_027171561.13.5e-3156.91uncharacterized protein LOC113771144 [Coffea eugenioides][more]
XP_027157225.11.3e-3055.28uncharacterized protein LOC113758655 [Coffea eugenioides][more]
XP_027154988.11.3e-3055.28uncharacterized protein LOC113755115 [Coffea eugenioides][more]
XP_027120381.16.7e-3052.03uncharacterized protein LOC113737334 [Coffea arabica][more]
Match NameE-valueIdentityDescription
P925552.8e-1555.07Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..110
e-value: 1.6E-9
score: 37.6
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 12..127
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 12..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026178.1Lag0026178.1mRNA