|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTCCTTCCCGCCGGCGACGGACCCGACCACCGCCGTAGCGCCGGCTGCGGCGACTCCCTTTTCGAACTCGACGAGTCCGACCTCTTCAACTCGCCGCGCTCCGCCGAATCGCCGGATTTCCGAAGACCGGCCTCCAAAACGCGAATCTCGAAGCGGATGTCCGCCAAGGTCGTCGACGCGGGAGACCGGACTGTAACGACGGCGGCGTCGCTTCCGGTCAACATCCCGGACTGGTCGAAGATCCTGAGGAACGAGTACATCGAGAATCGGAGAGATAGCTTCGACGACGACGACGACGACGAAGACGCCAACGGCGGCGATGACTTCGAGGACGGCCGATTTAGGGTTCCGCCGCACGAATTTCTGGCGAGGACGAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGCTGAAAGGGAGAGATCTGAGCAGAGTTCGAGACGCGATTTGGCAAAAAACTGGATTCGAAGATTGA mRNA sequence ATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTCCTTCCCGCCGGCGACGGACCCGACCACCGCCGTAGCGCCGGCTGCGGCGACTCCCTTTTCGAACTCGACGAGTCCGACCTCTTCAACTCGCCGCGCTCCGCCGAATCGCCGGATTTCCGAAGACCGGCCTCCAAAACGCGAATCTCGAAGCGGATGTCCGCCAAGGTCGTCGACGCGGGAGACCGGACTGTAACGACGGCGGCGTCGCTTCCGGTCAACATCCCGGACTGGTCGAAGATCCTGAGGAACGAGTACATCGAGAATCGGAGAGATAGCTTCGACGACGACGACGACGACGAAGACGCCAACGGCGGCGATGACTTCGAGGACGGCCGATTTAGGGTTCCGCCGCACGAATTTCTGGCGAGGACGAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGCTGAAAGGGAGAGATCTGAGCAGAGTTCGAGACGCGATTTGGCAAAAAACTGGATTCGAAGATTGA Coding sequence (CDS) ATGGCGACTGGTAAGAGTTACTTCTCTCGCTCCAAGTTCCGCTTCCTTCCCGCCGGCGACGGACCCGACCACCGCCGTAGCGCCGGCTGCGGCGACTCCCTTTTCGAACTCGACGAGTCCGACCTCTTCAACTCGCCGCGCTCCGCCGAATCGCCGGATTTCCGAAGACCGGCCTCCAAAACGCGAATCTCGAAGCGGATGTCCGCCAAGGTCGTCGACGCGGGAGACCGGACTGTAACGACGGCGGCGTCGCTTCCGGTCAACATCCCGGACTGGTCGAAGATCCTGAGGAACGAGTACATCGAGAATCGGAGAGATAGCTTCGACGACGACGACGACGACGAAGACGCCAACGGCGGCGATGACTTCGAGGACGGCCGATTTAGGGTTCCGCCGCACGAATTTCTGGCGAGGACGAGAATCGCTTCGTTTTCGGTTCACGAAGGAATCGGAAGAACGCTGAAAGGGAGAGATCTGAGCAGAGTTCGAGACGCGATTTGGCAAAAAACTGGATTCGAAGATTGA Protein sequence MATGKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPASKTRISKRMSAKVVDAGDRTVTTAASLPVNIPDWSKILRNEYIENRRDSFDDDDDDEDANGGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED
Homology
BLAST of Lag0026119 vs. NCBI nr
Match: XP_038894808.1 (uncharacterized protein LOC120083221 [Benincasa hispida]) HSP 1 Score: 285.8 bits (730), Expect = 2.5e-73 Identity = 148/176 (84.09%), Postives = 160/176 (90.91%), Query Frame = 0
Query: 1 MATGKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPASK 60
MATG+SYFSRSKFRFLPAGDGPDH R GD++F+ DESDLFNSP S SP+FRRPA+K
Sbjct: 1 MATGRSYFSRSKFRFLPAGDGPDHCR----GDAVFDFDESDLFNSPHSGTSPEFRRPATK 60
Query: 61 TRISKRMSAKVVDAGDRTVTT--AASLPVNIPDWSKILRNEYIENRRDSFDDDDDDEDAN 120
TRISKR+S VVDAGDR VTT AASLPVNIPDWSKILRNEYIENRRD+F DDD+DED +
Sbjct: 61 TRISKRIS-PVVDAGDRNVTTVSAASLPVNIPDWSKILRNEYIENRRDNF-DDDEDEDGD 120
Query: 121 GGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 175
GGDDFE+GRFRVPPHEFLA+TRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED
Sbjct: 121 GGDDFEEGRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 170
BLAST of Lag0026119 vs. NCBI nr
Match: XP_022970343.1 (uncharacterized protein LOC111469336 [Cucurbita maxima]) HSP 1 Score: 273.9 bits (699), Expect = 9.8e-70 Identity = 145/179 (81.01%), Postives = 155/179 (86.59%), Query Frame = 0
Query: 1 MATGKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPASK 60
MATG +YFSRSKFRFLP DGPDHRR+ DS+FELDESDLFNSPRS+ SP+FRR SK
Sbjct: 1 MATGNTYFSRSKFRFLPTADGPDHRRT----DSVFELDESDLFNSPRSSASPEFRRSVSK 60
Query: 61 TRISKRMSAKVVDAGDRTV--TTAASLPVNIPDWSKILRNEYIENRRDSFDDDDDD---E 120
+RISKR+SA VD DR+V TAASLPVNIPDWSKILRNEYIENRRD FDDDDDD E
Sbjct: 61 SRISKRISA--VDDEDRSVKTVTAASLPVNIPDWSKILRNEYIENRRDGFDDDDDDDDEE 120
Query: 121 DANGGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 175
D GG DFEDGRFRVPPHEFLA+TRIASFSVHEG+GRTLKGRDLSRVRDAIWQKTGFED
Sbjct: 121 DGVGGCDFEDGRFRVPPHEFLAKTRIASFSVHEGVGRTLKGRDLSRVRDAIWQKTGFED 173
BLAST of Lag0026119 vs. NCBI nr
Match: XP_023519114.1 (uncharacterized protein LOC111782574 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 273.1 bits (697), Expect = 1.7e-69 Identity = 144/179 (80.45%), Postives = 155/179 (86.59%), Query Frame = 0
Query: 1 MATGKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPASK 60
MATG +YFSRSKFRFLP DGPDHRR+ DS+FELDESDLFNSPRS+ SP+FRR SK
Sbjct: 1 MATGNTYFSRSKFRFLPTADGPDHRRT----DSVFELDESDLFNSPRSSASPEFRRSVSK 60
Query: 61 TRISKRMSAKVVDAGDRTV--TTAASLPVNIPDWSKILRNEYIENRRDSF---DDDDDDE 120
+RISKR+SA VD DR+V TAASLPVNIPDWSKILRNEYIENRRD F DDDDD+E
Sbjct: 61 SRISKRISA--VDDEDRSVKTVTAASLPVNIPDWSKILRNEYIENRRDGFDDEDDDDDEE 120
Query: 121 DANGGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 175
D GG DFEDGRFRVPPHEFLA+TRIASFSVHEG+GRTLKGRDLSRVRDAIWQKTGFED
Sbjct: 121 DGVGGGDFEDGRFRVPPHEFLAKTRIASFSVHEGVGRTLKGRDLSRVRDAIWQKTGFED 173
BLAST of Lag0026119 vs. NCBI nr
Match: XP_008462513.1 (PREDICTED: uncharacterized protein LOC103500846 [Cucumis melo]) HSP 1 Score: 270.0 bits (689), Expect = 1.4e-68 Identity = 142/176 (80.68%), Postives = 154/176 (87.50%), Query Frame = 0
Query: 1 MATGKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPASK 60
MATGKSYFSRSKFRFLPAGDGPDH RS D+ F+ DESDLFNSP S SP+FRRPASK
Sbjct: 1 MATGKSYFSRSKFRFLPAGDGPDHCRS----DAAFDFDESDLFNSPHSGTSPEFRRPASK 60
Query: 61 TRISKRMSAKVVDAGDRTVTT--AASLPVNIPDWSKILRNEYIENRRDSFDDDDDDEDAN 120
+RISKR+S VD GDR+VTT AASLPVNIPDWSKILRNEYIENRRD F+D+D D+D
Sbjct: 61 SRISKRISP--VDVGDRSVTTVSAASLPVNIPDWSKILRNEYIENRRDDFEDEDGDDD-- 120
Query: 121 GGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 175
GD+FE+ RFRVPPHEFLA+TRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED
Sbjct: 121 -GDEFEEKRFRVPPHEFLAKTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 167
BLAST of Lag0026119 vs. NCBI nr
Match: KAG6583586.1 (hypothetical protein SDJN03_19518, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019288.1 hypothetical protein SDJN02_18248, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 267.3 bits (682), Expect = 9.2e-68 Identity = 143/179 (79.89%), Postives = 154/179 (86.03%), Query Frame = 0
Query: 1 MAT-GKSYFSRSKFRFLPAGDGPDHRRSAGCGDSLFELDESDLFNSPRSAESPDFRRPAS 60
MAT G +YFSRSKFRFLP DGPDHRR+ DS+FELDESDLFNSP S+ +P+FRR S
Sbjct: 1 MATGGNTYFSRSKFRFLPTADGPDHRRT----DSVFELDESDLFNSPHSSATPEFRRSVS 60
Query: 61 KTRISKRMSAKVVDAGDRTV--TTAASLPVNIPDWSKILRNEYIENRRDSFDDDDDD--E 120
K+RISKR+SA VD DR+V TAASLPVNIPDWSKILRNEYIENRRD FDDDDDD E
Sbjct: 61 KSRISKRISA--VDDEDRSVKTVTAASLPVNIPDWSKILRNEYIENRRDGFDDDDDDDEE 120
Query: 121 DANGGDDFEDGRFRVPPHEFLARTRIASFSVHEGIGRTLKGRDLSRVRDAIWQKTGFED 175
D GG DFEDGRFRVPPHEFLA+TRIASFSVHEG+GRTLKGRDLSRVRDAIWQKTGFED
Sbjct: 121 DGVGGGDFEDGRFRVPPHEFLAKTRIASFSVHEGVGRTLKGRDLSRVRDAIWQKTGFED 173
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038894808.1 | 2.5e-73 | 84.09 | uncharacterized protein LOC120083221 [Benincasa hispida] | [more] |
| XP_022970343.1 | 9.8e-70 | 81.01 | uncharacterized protein LOC111469336 [Cucurbita maxima] | [more] |
| XP_023519114.1 | 1.7e-69 | 80.45 | uncharacterized protein LOC111782574 [Cucurbita pepo subsp. pepo] | [more] |
| XP_008462513.1 | 1.4e-68 | 80.68 | PREDICTED: uncharacterized protein LOC103500846 [Cucumis melo] | [more] |
| KAG6583586.1 | 9.2e-68 | 79.89 | hypothetical protein SDJN03_19518, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR007608 | Senescence regulator S40 | PFAM | PF04520 | Senescence_reg | coord: 45..174
e-value: 7.9E-38
score: 130.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 17..32 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..62 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 105..128 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 106..121 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 13..32 |
| None | No IPR available | PANTHER | PTHR46525 | EMB|CAB72159.1 | coord: 1..174 |
| None | No IPR available | PANTHER | PTHR46525:SF2 | EMB|CAB72159.1 | coord: 1..174 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
