Lag0026113 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0026113
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Histone H2B
Location	chr10: 29713517 .. 29713942 (+)
RNA-Seq Expression	Lag0026113
Synteny	Lag0026113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCAGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCCAGAGCTGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAGGGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCCACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACTAAGTTCACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCAGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCCAGAGCTGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAGGGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCCACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACTAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCAGAGAAGAAGCCCGCCGAGAAGAAGCCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCCAGAGCTGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAGGGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCCACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACTAAGTTCACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Lag0026113 vs. NCBI nr
Match: XP_022937557.1 (histone H2B-like [Cucurbita moschata] >XP_022937558.1 histone H2B-like [Cucurbita moschata] >XP_022969534.1 histone H2B [Cucurbita maxima] >XP_023537508.1 histone H2B [Cucurbita pepo subsp. pepo] >XP_023537509.1 histone H2B [Cucurbita pepo subsp. pepo] >KAG6586018.1 hypothetical protein SDJN03_18751, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020794.1 hypothetical protein SDJN02_17482, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-61
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD +DKKKK+AKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lag0026113 vs. NCBI nr
Match: KAG6586017.1 (hypothetical protein SDJN03_18750, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020793.1 hypothetical protein SDJN02_17481, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD +DKK+K+AKKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKRKKAKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lag0026113 vs. NCBI nr
Match: KAE8652780.1 (hypothetical protein Csa_022685 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKP-AEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKP AEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 39  MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 98

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 159 PGELAKHAVSEGTKAVTKFTSS 180

[Close]

BLAST of Lag0026113 vs. NCBI nr
Match: XP_030959009.1 (probable histone H2B.1 [Quercus lobata])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 137/141 (97.16%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD+S+KKKKR+KKSVETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDSSEKKKKRSKKSVETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lag0026113 vs. NCBI nr
Match: XP_038893815.1 (histone H2B.7-like [Benincasa hispida] >XP_038894882.1 histone H2B.7-like [Benincasa hispida] >KAA0032591.1 histone H2B.7 [Cucumis melo var. makuwa] >KGN64852.1 hypothetical protein Csa_022825 [Cucumis sativus] >KAA0032596.1 histone H2B.7 [Cucumis melo var. makuwa] >KAA0032602.1 histone H2B.7 [Cucumis melo var. makuwa] >TYK20883.1 histone H2B.7 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.2e-61
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKP-AEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKP AEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-59
Identity = 134/147 (91.16%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKK--AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSVETY 60
           MAPKAEKKPAEKKPAEEKK  AEKAPAEKKP+A KKLPK+    A DKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 142
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 224.9 bits (572), Expect = 5.5e-58
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot
Match: O49118 (Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-58
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MAPKAE--KKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDAS--DKKKKRAKKSVETYKI 60
           MAPKA   KKPAEKKP EEKKAE+ PAEKKP+A KKLPKDA   DKKKKRAKKS+ETYKI
Sbjct: 1   MAPKAAAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGRPDKKKKRAKKSIETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot
Match: O65821 (Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDA-SDKKKKRAKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKAE+ PAEKKP+A KKLPKDA +DKKKK++KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKDA---SDKKKKRAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Lag0026113 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937557.1	2.3e-61	97.87	histone H2B-like [Cucurbita moschata] >XP_022937558.1 histone H2B-like [Cucurbit...	[more]
KAG6586017.1	5.2e-61	97.16	hypothetical protein SDJN03_18750, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652780.1	5.2e-61	98.59	hypothetical protein Csa_022685 [Cucumis sativus]	[more]
XP_030959009.1	5.2e-61	97.16	probable histone H2B.1 [Quercus lobata]	[more]
XP_038893815.1	5.2e-61	98.59	histone H2B.7-like [Benincasa hispida] >XP_038894882.1 histone H2B.7-like [Benin...	[more]

BLAST of Lag0026113 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	6.6e-59	91.16	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q9LZT0	5.5e-58	91.72	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]
O49118	7.2e-58	90.34	Histone H2B OS=Capsicum annuum OX=4072 GN=HIS2B PE=2 SV=3	[more]
O65821	1.2e-57	90.14	Histone H2B.1 OS=Solanum lycopersicum OX=4081 GN=H2B-1 PE=2 SV=4	[more]
P40283	1.6e-57	88.67	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 73..93 score: 75.74 coord: 112..125 score: 92.45 coord: 54..72 score: 80.55 coord: 125..138 score: 92.65 coord: 95..112 score: 76.51
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 44..140 e-value: 4.3E-73 score: 258.8
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..141
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 109..131
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..117 e-value: 1.5E-22 score: 80.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..141 e-value: 1.6E-58 score: 198.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 26..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR23428:SF278	HISTONE H2B	coord: 5..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0026113.1	Lag0026113.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity