Lag0026037 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026037
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 27591113 .. 27591469 (-)
RNA-Seq ExpressionLag0026037
SyntenyLag0026037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTCTACAATATTATGAAGGGTTTAGAAATCAACGTTGGGAGCATAATCAGAGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAACTCTTCTTTGGATCGCTGATCACCCAGCTATGTCAGAGGGTGAAGATAGTTCCTGGTAAGAATGAGGAGCGCCACTTCTTTAGGCCCACCATCGACCTATCCTTGATCGGGAAGCTTCAACAAAATAACATCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCTTCAAGGCTAAATCTGGCTTTTCCACCTCAACACACTCCTTTTTTAGGGCCCTCATCGTCAACTGAAGCCCTAGCAATTGCCTACTGA

mRNA sequence

ATGCTCCTCTACAATATTATGAAGGGTTTAGAAATCAACGTTGGGAGCATAATCAGAGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAACTCTTCTTTGGATCGCTGATCACCCAGCTATGTCAGAGGGTGAAGATAGTTCCTGGTAAGAATGAGGAGCGCCACTTCTTTAGGCCCACCATCGACCTATCCTTGATCGGGAAGCTTCAACAAAATAACATCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCTTCAAGGCTAAATCTGGCTTTTCCACCTCAACACACTCCTTTTTTAGGGCCCTCATCGTCAACTGAAGCCCTAGCAATTGCCTACTGA

Coding sequence (CDS)

ATGCTCCTCTACAATATTATGAAGGGTTTAGAAATCAACGTTGGGAGCATAATCAGAGAGGAAATCCTTGCCTGTGGAAGGAAGAAAGCAGGGAAACTCTTCTTTGGATCGCTGATCACCCAGCTATGTCAGAGGGTGAAGATAGTTCCTGGTAAGAATGAGGAGCGCCACTTCTTTAGGCCCACCATCGACCTATCCTTGATCGGGAAGCTTCAACAAAATAACATCCAAAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCTTCAAGGCTAAATCTGGCTTTTCCACCTCAACACACTCCTTTTTTAGGGCCCTCATCGTCAACTGAAGCCCTAGCAATTGCCTACTGA

Protein sequence

MLLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEERHFFRPTIDLSLIGKLQQNNIQRKDKASTSQATPPSRLNLAFPPQHTPFLGPSSSTEALAIAY
Homology
BLAST of Lag0026037 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 1   MLLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEERHFFR 60
           +LLY+++ G  INVG +I  EI AC  +K+G LFF SLITQLC+  +     NEE+    
Sbjct: 71  LLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNARAPFLVNEEKLHIT 130

Query: 61  PTIDLSLIGKL-QQNNIQRKDKASTSQATPPS 92
             ID   + ++ Q+   +   + STS+ T  S
Sbjct: 131 GEIDAIAVARITQEGQTELTQQPSTSRPTVAS 162

BLAST of Lag0026037 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-06
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 0

Query: 1   MLLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEERHFFR 60
           +LLY+++ G  INVG II  EI AC  +K G LFF SLIT++C+  +     NEE+    
Sbjct: 38  LLLYSMLTGKSINVGRIIHREICACAARKPGALFFPSLITRMCRNARAPYLVNEEKLHNT 97

Query: 61  PTIDLSLIGKLQQNNIQRKDKASTS 86
             ID   + ++ Q         S+S
Sbjct: 98  GEIDAIAVARIAQEGPAEPSHRSSS 122

BLAST of Lag0026037 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MLLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEERHFFR 60
           +LL++++ G  INVG +I  EI AC  +K G LFF SLIT+LC+  +     NEE+    
Sbjct: 200 LLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNT 259

Query: 61  PTIDLSLIGKLQQ 74
             ID   + ++ Q
Sbjct: 260 GEIDAIAVARIAQ 272

BLAST of Lag0026037 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1   MLLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEERHFFR 60
           +LL++++ G  INVG +I  EI AC  +K G LFF SLIT+LC+  +     NEE+    
Sbjct: 191 LLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNT 250

Query: 61  PTIDLSLIGKLQQ 74
             ID   + ++ Q
Sbjct: 251 GEIDAIAVARITQ 263

BLAST of Lag0026037 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 2   LLYNIMKGLEINVGSIIREEILACGRKKAGKLFFGSLITQLCQRVKIVPGKNEER 57
           LLY+++ G  INVG +I  EI AC  +K+G LFF SLIT +C+  +     NEE+
Sbjct: 222 LLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTRAPYLVNEEK 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON59596.16.1e-0739.13hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON65869.18.8e-0637.65hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
PON46472.11.3e-0439.73hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON35554.11.3e-0439.73hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
PON70375.12.2e-0447.27hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026037.1Lag0026037.1mRNA