Lag0025944 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025944
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr10: 24859455 .. 24869768 (-)
RNA-Seq ExpressionLag0025944
SyntenyLag0025944
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTGGGTGGGGCTCAATATGTTCTAGGGCTCCAAATTGTTCGGGATCGTAAGGACAAGACCCTAGCTCTATCCCAGGCATCTTATATCGACAAGTTGTTGGTTAGATATAAGATGAAGAATTCCAAGAAGGGTTTATTACCTTTTAGGCACGAAATTCATTTGTCAAAGGAACAATTACCTAAGACACCTCAAGAAGTTGAAGACATGAAACAAATTCCCCGTGCCTCTGCAATAGGCAACCTTATGTATGTTATGTTTATGTATAAGGTCTGATATATGTTATGTAGTAGGAATTGTTAGTAGGTATCAATCCAATCCAGGATTCGATCACTGGAAAGTCGTTTGGGTATCCATGTTGAGGGCATTTCCTCGGTAGCTCCTTGAATCTTTCCTAGGCCTCGAATAGTTGCTCATCGAACTGCTGCTGAAATGTCTCAATTTCAGTCCTCAACTTGACCGTCTTTGTAGGAGGAAAGAACTTTAAAAAAGGCCTCAACCAAAGCATCCCAGGTGATAATGCTTCTAGGGAGTATTGGCTACAACCAATCTCGTGCTTTATCCTGCAAAGAGAAAGGGAAAAGGCGTAAGCAAATGAACCCCTCAGTAACACCATTAAGTTTAATTGTCCCACAAATATCTAGAAAATATTTGAGATGAGAATTTGGATCCTCTGAAAGCGCAATCTCGAGCCATCTAGATCAAACTAGTTTTTAGCTCAAAGTTGTTTGTATTAATCGGGGCATAGACTATCCCCGATTGCTGCCCCTGAAACACAGGCTGAAAATGGTCACAAATGGGTTTAGGCTCCTCAGGTGGATTTGGATTGGCCTTTTGGATAGAATCTTTATTCTTCCTTCGAAGCCTACTAATGGTCCTCTCAATCTCGGGGTACAAAGGTACTAAGACCAAATCCCTATCCTTTCGCATACAACAGTCTATCCTAAAAAGGAAAATCTTACTATCTTAAAAGTGACATAGTTTGATAATCATTTTTGGACCTTTATGTCCCAATGTTAATTTTATAATTCCAAATATGTCCCTTATTACTTCTTTCAATTTTGTAGAATTTGAAAGAGTTTTTTAAATTATAAAAATCTTTATTACTTTTCAATTTTCACTTCTATCCACCACTTTCCTACAATTTCTCTCCCTTCCTCTCTCCACTTTTCATTTCATCGAGTGGTTGGGTACTTATGTGGCTTATTTTCCATCATTTCGTATTCCACCTCTCCCCCCATTTATCAATATTTATTTGTTTTTATTACTCTCATAACAAACCCTTTTGTGCTTCTTTTTTAATGGTTTCAAATTCAAATAAGACTTCTCATTTTCTTTTTTACTTTTTTTTTTAATTTTATATATACTTGTTTGTAAACTCGAGACTTCCCTTGGATTATTTTCTCATGTCACATATTGTAGGAAGTTGGATTTAAGTTGTTGTTGTTCATTGTTGAAGAAAATGGCAAAGCTTTGTGGTTTCATTGTTGGATTAAAGTTGTTGGAATTTATTTATTTAAAAAAAAAAAAACCAAAACAACAACAACAAAGAAAATGAAAAGGAAGCTGAAGGAAATAAAAGGAAAGAAAAGAAAAGGAAAGGAAAAAGGGGGAAAATGAAAGGAAATGGAAAGCATTTTCGGTTAGTGCTTTAAGTCAAGGATCCACCAACGCCTCAGCCCATTTTCAGCCATTTTGCTCATCCTTTTCCCATCAAATTTACAGAGCATTTCGAGGGAGAGAGTGAAGGAAGAAGAAGAAGGAGCTTGCTAGGGTTTTGAGGTTGAAGAAGAGAGGAAAAAGCTCAAGCAAAAGCAACCATGGTAGAATCTGGGTTCAACTTGCCTATCTCTGGTTTTTAATTCGTTTTGAGCTACACAAGAAGAACTAATGCTATGTTTGGGAGTGATTTTGGCATGGCCAAAATCACTTTTTCCATTTCCAAAATCACTTTTCTTTCAAATATTCATGTTTGGCAAATGTTGAAATTGATTTTAGAAAACTCTAAAATCATTTAAAATTGATTTTTGAATAATTAGGTGGGAGATGATTTTGGGTGAGGTGATTGACCGGGAATCACCATCAAATTTTTCCCTCATTTCATTCATGTAGTGAAATATCAAATTTGCCCATGTATTTTATACTTCACCTTCTTGCGTCTTTTCCCTTGTATGTCAAATTTGCGTCTTCAACTTTCAAGCCCTAGCTTCAACCTTCTTCTCCTTCCTCTCTACTCAGCCACCATACCCCTTCCCTCGTGTTCCTATTTCATCTTTTGTTTCGGAAACTTTGTAATCGCCATTTTTGCGTCTTCTTGAGATCATACGCGATCGTTACTGCCATTTCATTTCCTCCTCCTGCTGCTATTCTCCATCCTCTCTTCCTCCTCTGTCCACTGGAGGCCTCGTCGTAAGTTCCTCAACCGGTGCAATATTCGGCAGCTCATCAAACGACCAACAGCGTGTGCAAACTTCACATTGGCTGCTGATTAGATTACAAGAGGTAAAAATGTGGAATGTTAAATGATTGGGTTTATAGGGTTTTGGGGGATTGGGGAAATCGATTAATTGAGCTATTTTGGCTGTCTGGATGAAAATCGATTAATTGGGGTATCTTTTCTTGTTTCACAGCGACTTCTCTGCCAAACTATTATAGCTTTGTTGAATGAACTTAGAAAATTTCTTGTGAAATTTGTTCTGATGAATCTGTTTGGATGAAATTGATTTAGGGCTTGTTAGATTAATTGGTGAGGAGTACCATATGCTATTAGAAATGGGATTTTATCTTGAAAAAATAATTTTTATAAGAAAACAAGAATGGATGATCACAAGAAAGACCTTCGCCAATGTAATGAGTTTGATTTTGTAGTTGGCTTTATTTGAAATGGGGGAAAAGATTATACCCATATTGTGTTATATGGAGGGAGAGATTCGAGATGGAGTACATGGTATATTCTATGGTAAAGGGGGGATTATATTTCAAGAAGGCAGAGGATTTGATGAGTTGAAAAAAATGTTGAATGATGGGCTTTTTGGCAATGAAAGAGGGGATGAAGAGTTGGAAATAACTTACCTATTTCCTACTACTTATGCATCAACATTTGTATCTGGAGGCATGTTTGATAAGCATGTTTGATATTCAATCTGTAACATATTTTCTTTTGTTGACTACAATCTGTAACATTCATTCAATATGGTTTTAAAAGGATATATCAATGAAAAACATTTTATCAAAACTATATTATTTATTGATCTCATTGTAGGCTTTGAGACATAACAGAGATATGTATAGAAGTTTCCTGCCTCTGATGTTCTTAGTTTGTGTAGAAAATTAGTTAAATATTTCATTTTAAAGATTTGTTTTTCATTTCTTGTTTTGTATTTGGTGAGATGTGTGTTGAATTTGAATTAGGTTTTGGGTATATGGTGATGGTTGTGGTTAGAGTTGATTTTTTATTCTCTCCTTTTCTTTTTTAAGAACTCATTCTACAACTGACTTTGAGTTCAAGCCTTACAACGACGATGAAGATTTGCTCCCTTCAAGTGATGAAAGAAACGAGTTGAGTGTAGAACTTCTCATGTCACGCTGATGTATTTATTATATAGTTTGTGTTTTACTAGATAATATCTAGTTTAAGTATTTGCAACGTTACAAACATTTCTAGATTGGATATGATATGACTTTCAAATTTTTATTTCGATATGTATTATACATATTTTTTACCTAAAATATTTTATAAAATTTTAACAATAAAAAAATGAAAAAATAACTAATAAAAAGTGATATTTATCATAATTATTTAGTTAAATAATTTCTTGGTTGTAAAATGCCCTTTTTAGTAATTTGGTCATTCTAAAATCATTTTTGAAACTAAACATAATATTTCAAAATCACTTTTAAATATATGAAAATCACTTTTAAAAGTTTGGAACCAAACATAAATATGATTGTATTAAAATCAATTTTATAAAATCTCTTTACCCAAAATCAATAATGCAAACATCGCTCCCAAACATAGCCTAAGAGGTGAGGTCTGACTTTCTTGAAAGTTAATCCATTTTCTAACAAATTTCATGAAGAAAGCTTGAGCTAAATCTGATCTTAAGTTAATGGTTTTTTAAATGGAAAACAGAGCACAGAATTTTCATGCAAATTAGGAGGATCTCTAGTTTTCTTTGGTTTTTCGATTATTCTGGGGTGTACAGGTTGAATTAGAAGCTAAATTTGGTATGGTTGGAAAAATTATTCAATTTCCTATAACTTTCATGAAGAATTCGTAAGCAAAAAATGACTAGAAGTAGGTTTAATTTCAGGAGAAAGGTAGAGAGTAGCAGAGAAGCACGAATCTGTATTTGTTGTGTTTGGGGGATTTCTGGACAAGTCTGTTGGGAATCTCGTTTTCATTCCTTCAGGTAAGTTTTAGAGGATTCCAAAATGAAGAGTTTGATATATAGTACATTAATTTTGGTCAAGTATTGAGGAAGTTACGAGTGTTGGAAGTTAAGGTATTGAATTTGGAAAATCTGGAAAAAAGTGTGAAGTGTGCTTTTATTTCTAGAAATTAGAATTCATGAGCATGGAAAGACAAGACGATTTATAGTTTTGACGCTCGATTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGAGAACTAGCCAGGGCTGTGAGTGACAAAACAAATTTCGAAAATTATTTCTAAACTGTTGTCTATGAGTTGACGTTTTACATGCTTTTCTATTAATGGTTTCAAGCATAAGTTTCAAGCTTAAATTTTCTAATGAAATTTATATGTGAGCACGTGATTATTGATTTTCTGAAAAGTAGTTGAAACGATATCATTTTAAGCAAAGTATGTATTAGCGAGTATTGTTTAAAGATTTTCAGTTTTCCACGAGCAAGCTGAGTAAGCTTGAGTTTTATGAAAGATAAAGATAAGCATGCATGTTTTAATGTTTTCAAGTGATTTTCTAAGATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTACACACAGGTTATATTTCGTTGTTGACGTTGAGTGTAATCCGTGACAACGATATTGTCGTGAGTGTTGGGTGGGCCCCACTACATCGTAGAGCTAGTAAACATTGGTTGTACTGGGCGTGCCCTATACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCAAGATTTTTTTTTTAATGACGTACTTGTGGGGTATTTGAGAAAGCTTTTATTATTACACGTTTATGTTTAACGCTTTGATTGAACAGATTTATACGTTTAAAGGTTTATCACGTGTTTTGATTTGCGGATTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCATAGCTCACTCTTTCAAAATGTTTTCCCACTTTTTAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTTTGCTGAAAGCTCCAGATCGACTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTGTAAGAAGTGGATATGTTTTTTGTTGTAATAGCTCTATCAGGTTTATTTTCCAAACTGAGTTAAGTCAGGGTTGCACTTCATGTATGTTAAAAGGTTTTCAGGGATTCTGTTAGGTTGTGTTACATGTAAAGTATTGTATATCTAAAACTAGTATGTTTATCAAGTTCAATGATTCAGCATGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACATTGTTTATTCTCAACCTTCTATATAAATAGACAAATCCTTTTGCACATTCTTCACAACTAGACAAATCATATCCTCTATATAATTTTTTAAATGGATGGCAAAAGTGGTAGTAATGGCAACGACGATGACGACAATAAGATTCAAGTTGACGACTACAAAAAGTGGTGGTGTAACTTTGGGAAGATGGTACGACCTTTCAAGGTGGAGAAAACACTCATTCACTTCTCTTGAGATGCATTTGGGAGCAATCCTAAAAAATTTTACAACCTCCATGTAGTAGAAAGGAACAAGAAGTAGAAACGGGTTAAAATCTCAAAGTCATGTAAAAGTTTATTATGATAAACTAAAATGTGCATTTGGTTCTTTCTCTTTTTAGCTTCTAATTTTTTTTTTTTTTGTACCAATTTGTCTTTATCGTTTATTTTTCTTAATTATATAACATAAATTTGATTTTTTTTATTTTCATTTTGGTACATATGGTTTTCTAAATATATGGTCATGTATGATAATTATCAAATAAATAAACAAAACACATGTTTGTGTTTATGTCTGTAGGTTTCTAAATGCATGAATTAGTATTCAATAAATTATAAAAGTTTTGAGACAAAAATAAGATTTAAAATATTTTACAATTTTTTTAAAAAAATGATGGAAACATCGACATATTTGAAAAGTTGACCTACATATATTTTCAACCAAAAAAATCATTGGATCAATAAAAATTATTTTCTAAGAAAAAATAATTTACTTCAACTATCAATCATATTTTAAAATTTTTAATTATTTTAAATAGTTAATAAATTTTCAATTTTCTAATAATGTCATGTTTAAAGTTGCAAGTTTGAACTTTTAGATAATATCTATAATATTATTATTTTAACTTCTAAAAAATACTTATGAAATTAAATACTCTCCCCTATCTCTTCAAATTCTTCATATGAGTTTCATCTCTCTCTCCCTCGCACTTTCTCCAATTGATCTCACAAAAGTAAATATATGTGTCTCTCAATCTTCTCATTGTTTCTCTCTCTCATTAATCCTAGAGAAAACATTATTAAATAATGTGAACCATTAGAACATGAAGAGTTGAACTAAAAAAAAGAACATGAAAAAAGAACACGAAGAGTTAGAATACAAGTAGTGTATCCTTTATTTTTATAAATTAATTCTAAGAATAAATGAGTTTGTCTTTAGTTATAATTAATAACAAAATTTCAAAAGTTTGGAGTATCAAAAAGTTTTATAAATTCTTTATCTTTATAACCATATAAGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAGAACCATATAAGTAGTTATTTCATACTTTTCTTTTTTCACAAAAATTTAAGTGTCATCTTTTTTTTCTTTTTGTTTACTTTTTCGTTCTTTGTTTCGATTTAACTTATAACTTTCTTTGAAATGTTTGATCTAATATTCATCTTTAGTTTTTGGGAAAAATACACTTTCGGTCCCTGAGGTTTGGGTTAAGTTACACTTTGCTCCCTGAGTTTTCAAACTCAACAAAAATACCCCTAAGGTTTGAGATAAGAAGCAATTTGGTCCTCGCCGTCCATTTTTCCGTTAAATACTAACGGAATGCTGATGTGGCACTATTATTTTAATTAAAAAATTAATTTTGAAATTTTTTAAATAAAATATATATTAAAATAATAAAAATATTATTATTTTATTAAATATTTTTAATTCTTTTCTCACTCTTTCTTCTCCTTTTTTCTCTTCACCTTCCTTCTCCAACTTCTTCTTCTCACACTCCTTCTACTCCAACTCCGGTGGCCGATAAGTTTTTTTTTTCTTTCTCTCTTTTATTCTCTCTTCTCCTTTATTTCTCAACCTTTCCTTTTTTTTTTTTTATAAAGAAGAGGTCCTCCTCCCGTTTCGCTCCGGCGACAGAGGAGGGAGGCCCTCCTCCCTCACGATTTTAGATCTGAAACCACGAGGGAGGAAGGCCTCCCTCCTCCCATTTCGCGTCGCGCTGGCGATGGGAGGAGGGAGACCCTCCTCCCTCACTGTCTTCGGAAAGGGAGGAGAGCCCTCCTCCCTTTCCCTCTTCTTTATAAAAAAAAAAAGAAAGAAAAGGTTGAGAAATAGAGGTGAAGAGAGAATAAAAGAGAGAAAGAAAAAAAAAACTTACTGGCGACCGGCGGCGGCTGGCCAGCGAACGGCGGTGGCCGCCGGCCACCGGAGTTGGAGAAGAAGGAATGTGAGAAAAAGAAGTGGGCGAATGAAGGTAAAGAGAAAGAAAGAGAAGAAAGAGTGAGAAAAGAATTAAAAATATTTAATAAAATAATAATATTTTTATTATTTCAATATATATTTTATTTAAAAAAATTCAAAATTAATTTTTTTAATTAAAATAATAGTGTCACGTCAGCATTTCGTTAGTATTTAATGGAAAAATGGACGACAGGAACCAAATTGCTCCTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGAACAAAGTGTAACTTAACCCAGACCTCAGAGACCTAAAGTGTATTTTTCCCTTAGTTTTTTTAGATGCAATTCTAATAGTGTGTGTATATGTGGATATTTATAATTTAATCGATACCATCCATCTTAATGTTTATATGTTTATAATTACTTAATACAAATAACTATTTTTTAAATAAAAAATTAATTCAGATATTTGATTTAAAAAAAATACCATGTGCTTCACATGTGTTAAAAGACTAGTAACAGAAAAGGAAATAACAAAATAAGGAAAGAAATAAAAAAAGGAAAACAACAAACAAAATCAGGAAAGCAATTAAATAAGGAAAGGGCAAATATGGAAACAAAAACAAACAAGGAAAAATAAACAAATATGGAAACAACAAAAAAGGAAATAACAAATAAGGAAAGCAATAAAAAAAGGAAACTAAAGGAAAAAAATGCAACTACCTAAAATAAAATAAAGTACACTACAAATTTTTCACGATATTAATCTAACTAAATAATTATCAATCCCTGACAACGGCGCCAAAAACTTGATGTGTGAAATCGGTACCGCAAGTGTGCGGGTCAAGTTTTAATATAGTGATTTTCGTGTTAAATGAGTGTCGTCCTCCGGATTGGGTTTCTTGTCAAATTAATTATCGTGAGTACTTTCATCCAATTTTATTTAGAGAGCAAAATGTAATGAGAAAGATCAAATTAAAACAACAAAACTATAAATTGGAAATTCAAATGGAGAAGATTCTTAGGGAGTTGATTTCATCAATTGAGGTTTAGGATTGATTTATGGGGTATGATTTTTAGCGAGCGATTATTTTATAAGTCAATGAAACATCATTTGCAATTATCTCTCCCGAGCATATTTGATTCTCATGCATGCGATAAACCCGATATCTCTATCTAGATTTAATTACATGCAAGACCTTAAGTCTAGTCCTTTTTACAACTTCTAAAGTTATTCTAAATCTCCCGATCTTAAAACTTTATTTCAGTTATGCAATTAAGATCTAAGCTAAATCCCCTCTCTCAAGCAAGATTCAACACAACAACATTCAATCAATGGCCGGTTAATTGAAAGCATTAAGAATATAATTGCATGAATAAATGAAGGGCACAATCATTCCATAAATCAATCCATAAACCTAAAAGACTACATCAATCCATAAGACAATCAATTTAGCTACTCATAGTCTTAGAACTAAAATCACTAATTGAAAGAAAAGTCATAAAAGATATAGATAAAAAGGAAAGAAAAGGGATAAAAACTTGAATCGTTGAAATCACACGTCCCCGTCACGATCTTCCCGAACTTTTGCCTTGAATCCCGCTCCTCGTCCTTGCTCAAGCTCCCACTCAAGGTCTCTAATCGAATTTAGGGCTCAAATGTCACCAATTGGACTCCCCTTGGTCATAGCAAATCGTTATGTATTTATAGAAATCGCAGGACAACGTCGAGACGATGTGCCCTTGTCGCCTCAGATAATTTTAAGGTAAAAACTAACAGCATCGAGCAGACGCTATCCTATAGGGAAAATTGGCTTAGGAAGAGCCTACAACAGCGTCGAGCCACCAAAAGGCAGCGTCTCGACGCTGGTCTCTCGGGTTTACTAGCTGCTGCAGGTCTCGGCTCGATTCTTCTCCGCTTCCTTCGCCTCTTTTTGCGTCCCGAACACTCAAACAACTTCCTAATTCAATAATTCATCCCATAATGCATTTCCTACAAAATAAACATGAAAGTGCATAATTTCAACCAATTTAATCTCAAAGAATAACAATTAAACATAGGGAAAAATAGCTCGTTATGTGCGTTATCAAACATCTTCAAGTATCTTCGGTGAACGAGGGACTATATGCTCGTGTATGACACTAAGGATTTGATCCTGACAGGATACACTGATTCTGACTTTCAAACCGATAAAGATTCAACGAAATTTACTTCAGGATCGATATTCACCCTTAACAGGGGAGTTATAGTATGA

mRNA sequence

ATGAAAGATTTGGGTGGGGCTCAATATGTTCTAGGGCTCCAAATTGTTCGGGATCGTAAGGACAAGACCCTAGCTCTATCCCAGGCATCTTATATCGACAAGTTGTTGGTTAGATATAAGATGAAGAATTCCAAGAAGGGTTTATTACCTTTTAGGCACGAAATTCATTTGTCAAAGGAACAATTACCTAAGACACCTCAAGAAGTTGAAGACATGAAACAAATTCCCCGTGCCTCTGCAATAGGCAACCTTATGTATGTTATGTTTATGTATAAGGAGGAAAGAACTTTAAAAAAGGCCTCAACCAAAGCATCCCAGGTGATAATGCTTCTAGGGAGTATTGGCTACAACCAATCTCGTGCTTTATCCTGCAAAGAGAAAGGGAAAAGGCACTATCCCCGATTGCTGCCCCTGAAACACAGGCTGAAAATGGTCACAAATGGGTTTAGGCTCCTCAGGTGGATTTGGATTGGCCTTTTGGATAGAATCTTTATTCTTCCTTCGAAGCCTACTAATGGTCCTCTCAATCTCGGGGTACAAAGATCATACGCGATCGTTACTGCCATTTCATTTCCTCCTCCTGCTGCTATTCTCCATCCTCTCTTCCTCCTCTGTCCACTGGAGGCCTCGTCGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGAGAACTAGCCAGGGCTATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTTTGCTGAAAGCTCCAGATCGACTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTCATGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCTGACTAAGCTAGCAGAAGAGGTCCTCCTCCCGTTTCGCTCCGGCGACAGAGGAGGGAGGCCCTCCTCCCTCACGATTTTAGATCTGAAACCACGAGGGAGGAAGGCCTCCCTCCTCCCATTTCGCGTCGCGCTGGCGATGGGAGGAGGGAGACCCTCCTCCCTCACTGTCTTCGGAAAGGGAGGAGAGCCCTCCTCCCTTTCCCTCTTCTTTATAAAAAAAAAAAGAAAGAAAAGGTTGAGAAATAGAGGTGAAGAGAGAATAAAAGAGAGAAAGAAAAAAAAAACTTACTGGCGACCGGCGGCGGCTGGCCAGCGAACGGCGGTGGCCGCCGGCCACCGGAGTTGGAGAAGAAGGAATGTGAGAAAAAGAAGTGGGCGAATGAAGGGCTCAAATGTCACCAATTGGACTCCCCTTGGTCATAGCAAATCGTTATGTATTTATAGAAATCGCAGGACAACGTCGAGACGATGTGCCCTTGTCGCCTCAGATAATTTTAAGGTAAAAACTAACAGCATCGAGCAGACGCTATCCTATAGGGAAAATTGGCTTAGGAAGAGCCTACAACAGCGTCGAGCCACCAAAAGGCAGCGTCTCGACGCTGGTCTCTCGGGTTTACTAGCTGCTGCAGGATACACTGATTCTGACTTTCAAACCGATAAAGATTCAACGAAATTTACTTCAGGATCGATATTCACCCTTAACAGGGGAGTTATAGTATGA

Coding sequence (CDS)

ATGAAAGATTTGGGTGGGGCTCAATATGTTCTAGGGCTCCAAATTGTTCGGGATCGTAAGGACAAGACCCTAGCTCTATCCCAGGCATCTTATATCGACAAGTTGTTGGTTAGATATAAGATGAAGAATTCCAAGAAGGGTTTATTACCTTTTAGGCACGAAATTCATTTGTCAAAGGAACAATTACCTAAGACACCTCAAGAAGTTGAAGACATGAAACAAATTCCCCGTGCCTCTGCAATAGGCAACCTTATGTATGTTATGTTTATGTATAAGGAGGAAAGAACTTTAAAAAAGGCCTCAACCAAAGCATCCCAGGTGATAATGCTTCTAGGGAGTATTGGCTACAACCAATCTCGTGCTTTATCCTGCAAAGAGAAAGGGAAAAGGCACTATCCCCGATTGCTGCCCCTGAAACACAGGCTGAAAATGGTCACAAATGGGTTTAGGCTCCTCAGGTGGATTTGGATTGGCCTTTTGGATAGAATCTTTATTCTTCCTTCGAAGCCTACTAATGGTCCTCTCAATCTCGGGGTACAAAGATCATACGCGATCGTTACTGCCATTTCATTTCCTCCTCCTGCTGCTATTCTCCATCCTCTCTTCCTCCTCTGTCCACTGGAGGCCTCGTCGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGAGAACTAGCCAGGGCTATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTACACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTTTGCTGAAAGCTCCAGATCGACTTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTTTTTGTATTGTAAATGTCTTTCATGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCTGACTAAGCTAGCAGAAGAGGTCCTCCTCCCGTTTCGCTCCGGCGACAGAGGAGGGAGGCCCTCCTCCCTCACGATTTTAGATCTGAAACCACGAGGGAGGAAGGCCTCCCTCCTCCCATTTCGCGTCGCGCTGGCGATGGGAGGAGGGAGACCCTCCTCCCTCACTGTCTTCGGAAAGGGAGGAGAGCCCTCCTCCCTTTCCCTCTTCTTTATAAAAAAAAAAAGAAAGAAAAGGTTGAGAAATAGAGGTGAAGAGAGAATAAAAGAGAGAAAGAAAAAAAAAACTTACTGGCGACCGGCGGCGGCTGGCCAGCGAACGGCGGTGGCCGCCGGCCACCGGAGTTGGAGAAGAAGGAATGTGAGAAAAAGAAGTGGGCGAATGAAGGGCTCAAATGTCACCAATTGGACTCCCCTTGGTCATAGCAAATCGTTATGTATTTATAGAAATCGCAGGACAACGTCGAGACGATGTGCCCTTGTCGCCTCAGATAATTTTAAGGTAAAAACTAACAGCATCGAGCAGACGCTATCCTATAGGGAAAATTGGCTTAGGAAGAGCCTACAACAGCGTCGAGCCACCAAAAGGCAGCGTCTCGACGCTGGTCTCTCGGGTTTACTAGCTGCTGCAGGATACACTGATTCTGACTTTCAAACCGATAAAGATTCAACGAAATTTACTTCAGGATCGATATTCACCCTTAACAGGGGAGTTATAGTATGA

Protein sequence

MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKEQLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEERTLKKASTKASQVIMLLGSIGYNQSRALSCKEKGKRHYPRLLPLKHRLKMVTNGFRLLRWIWIGLLDRIFILPSKPTNGPLNLGVQRSYAIVTAISFPPPAAILHPLFLLCPLEASSPRGNRPSLQTRELARAISIDYMTEILSLRLYGTVYTQVEIELPMPDTLPTFAESSRSTSSTWVELYIESFCIVNVFHGQQVSLEEDDVCWLHTIFLTKLAEEVLLPFRSGDRGGRPSSLTILDLKPRGRKASLLPFRVALAMGGGRPSSLTVFGKGGEPSSLSLFFIKKKRKKRLRNRGEERIKERKKKKTYWRPAAAGQRTAVAAGHRSWRRRNVRKRSGRMKGSNVTNWTPLGHSKSLCIYRNRRTTSRRCALVASDNFKVKTNSIEQTLSYRENWLRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV
Homology
[Close]
BLAST of Lag0025944 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-32
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 546 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 605

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE 95
           Q PKTPQEVEDM++IP ASA+G+LMYV+F  + E
Sbjct: 606 QCPKTPQEVEDMRRIPYASAVGSLMYVIFCTRLE 639

[Close]
BLAST of Lag0025944 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 5.1e-32
Identity = 73/88 (82.95%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
          MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 1  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61 QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
          Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 61 QSPKTPQEVEDMRRIPYASAVGSLMYVM 88

[Close]
BLAST of Lag0025944 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-03
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 494 LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV 547
           L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Sbjct: 121 LKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVV 172


HSP 2 Score: 149.8 bits (377), Expect = 6.7e-32
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
           Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVM 273

[Close]
BLAST of Lag0025944 vs. NCBI nr
Match: TYK16417.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-03
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 487 ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGV 546
           ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G 
Sbjct: 297 DHWTVVKMILKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGA 356


HSP 2 Score: 149.8 bits (377), Expect = 6.7e-32
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
           Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVM 273

[Close]
BLAST of Lag0025944 vs. NCBI nr
Match: KAA0062926.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-03
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 487 ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGV 546
           ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G 
Sbjct: 297 DHWTVVKMILKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGA 356


HSP 2 Score: 148.7 bits (374), Expect = 1.5e-31
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1    MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
            MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
            Q PKTPQEVEDM++IP ASA+G+LMY M
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAM 1023

[Close]
BLAST of Lag0025944 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-14
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 1    MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
            MKDLG AQ +LG++IVR+R  + L LSQ  YI+++L R+ MKN+K    P    + LSK+
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
              P T +E  +M ++P +SA+G+LMY M
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAM 1122

[Close]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-32
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 546 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 605

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVMFMYKEE 95
           Q PKTPQEVEDM++IP ASA+G+LMYV+F  + E
Sbjct: 606 QCPKTPQEVEDMRRIPYASAVGSLMYVIFCTRLE 639

[Close]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-32
Identity = 73/88 (82.95%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1  MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
          MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 1  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61 QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
          Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 61 QSPKTPQEVEDMRRIPYASAVGSLMYVM 88

[Close]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-03
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 494 LQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGVIV 547
           L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G +V
Sbjct: 121 LKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVV 172


HSP 2 Score: 149.8 bits (377), Expect = 3.2e-32
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
           Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVM 273

[Close]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match: A0A5D3CWZ1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002130 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-03
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 487 ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGV 546
           ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G 
Sbjct: 297 DHWTVVKMILKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGA 356


HSP 2 Score: 149.8 bits (377), Expect = 3.2e-32
Identity = 72/88 (81.82%), Postives = 83/88 (94.32%), Query Frame = 0 

Query: 1   MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
           MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDK+LVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 186 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKE 245

Query: 61  QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
           Q PKTPQEVEDM++IP ASA+G+LMYVM
Sbjct: 246 QCPKTPQEVEDMRRIPYASAVGSLMYVM 273

[Close]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match: A0A5A7V901 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00180 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-03
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 487 ENW--LRKSLQQRRATKRQRLDAGLSGLLAAAGYTDSDFQTDKDSTKFTSGSIFTLNRGV 546
           ++W  ++  L+  R T+   L  G   L+   GYTDSDFQTDKDS K TSGS+FTLN G 
Sbjct: 297 DHWTVVKMILKYLRRTRDYMLVYGAKDLI-LTGYTDSDFQTDKDSRKSTSGSVFTLNGGA 356


HSP 2 Score: 148.7 bits (374), Expect = 7.2e-32
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 0 

Query: 1    MKDLGGAQYVLGLQIVRDRKDKTLALSQASYIDKLLVRYKMKNSKKGLLPFRHEIHLSKE 60
            MKDLG AQYVLG+QI+RDRK+KTLALSQA+YIDKLLVRY M+NSKKGLLPFRH +HLSKE
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   QLPKTPQEVEDMKQIPRASAIGNLMYVM 89
            Q PKTPQEVEDM++IP ASA+G+LMY M
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAM 1023

The following BLAST results are available for this feature:
BLAST of Lag0025944 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033121.13.0e-3277.66gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ... [more]
KAA0042496.15.1e-3282.95gag/pol protein [Cucumis melo var. makuwa][more]
KAA0042496.18.5e-0356.60gag/pol protein [Cucumis melo var. makuwa][more]
TYK16417.18.5e-0350.00gag/pol protein [Cucumis melo var. makuwa][more]
KAA0062926.18.5e-0350.00gag/pol protein [Cucumis melo var. makuwa][more]

Pages

BLAST of Lag0025944 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109781.3e-1446.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Lag0025944 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CZY31.5e-3277.66Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004... [more]
A0A5A7TKM42.5e-3282.95Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047... [more]
A0A5A7TKM44.1e-0356.60Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047... [more]
A0A5D3CWZ14.1e-0350.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00213... [more]
A0A5A7V9014.1e-0350.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0018... [more]

Pages

BLAST of Lag0025944 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..441
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..432

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025944.1Lag0025944.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding