Lag0025854 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025854
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr10: 22174688 .. 22176424 (+)
RNA-Seq Expression	Lag0025854
Synteny	Lag0025854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGGAGACTGGTCGGAGAAGAAACGTCCGCAAGGAAGAAGAAAAACCCAAATGGCTGGCAGCGAAAAGAAAAAACCACGGGGAGGCGACAATTGACGGAGGCGACGGCGTGACAATGATTGGAAGGTAGGGTTATTTTTAGGGTTAGGATTGGGTATTTTTAGGGTTATATGGAAGTGTATGGGTCAAAGCAAAACACGAGACCACCGACGTCGGAAGTAGGATGCACCAATCAAGAATGGCGGCTAGGGTTCCAACGACGGCAGTGGCTAGGGTTCTTAGGGGTTTTAGAGACGACTAGGGTTTAACCTTGCTCTGCTACCATCTTAATTTTAGAAGAGTAATAGTCTCTTATTCAAATATGGACAACCTAGGTCTTCGTATATAGGAGAAAGACCCATTACAATATAAGGAAAGAATAAAAGCAATAATGACTAAATATTAACAAATAATATTTACACAATTATATAAACTAGAAATTCCAACAAAGAGAAAGAATGTTCGATAGATTCATGCTGGCACAAGAAGGAAGCCCTTGCGCCAAGTTCTTAGCGGGCAAACAGCATAACACAATGATGGAATATCGCAAGGAATTTGAAGAGCTCGCCGCACTAGTTCCACAAATCTAGGAGGAGGTTTTAGAAAATACTTTCTTAAATGGTTTGGATCCCTTACTTAAGGCTGAAGTAAGATGTTTAAAACCTTTGGGCCTCGAACAAATAATGAAGACGACCCAACTGATCGAAGATCGAAATACCACTTGGGAAGCCTGCAAGGACCAAAGGAACTCCACAAACCAATCCAAGGTACACTACAAAACTCTTGATCATGGTAAAATACGATCTATTGTGCTTGCAGAAAAGGCTCCAGCCCCACCCAAAGGCCCAAGTTACAAGAAATTGATTGATGCTTAGTTTCAGAATAGAAGAGAGAAGGGACTATGCTTCCATTGTGAGGAAAAATACACGGTGGGCCATAAATGCAAAAGTAAAGAGTTGAGGATTATGTTAATTCATGATGAATAAGACCTAGACGATATGTAAATAGATGAGATTTGTCCAACTAATGACGCAATGCAAGGGATTGAAGAAGGAAACATAGTTGAATTGTTAATCAACACCGTGGTAGGATTTTCAACTCCAGGGACGATGAAACTCAAGGGGATTATTGGCAAAACATAATGCATTATCCTAATAGATTGTGGGGCTACTCATAATTTCATATCGCAAAGACTCGTGGACAAGCTTCAAATACCAACCTCAAAAATTGGAAATTATGGAGTAGTCATGGGATCAAGAGTGGCTTTAAAAGGGAAGGGAATATGTAAGCAAGTCAGAATTCAGTTACAAGGATTGGTAGTCACAGAGGATTTTTTGCCAATAGAATTAGGAGAATTGGACCTCGTGTTAGGAATACAGTGGCTACGCACTTTGGGCTCAATGAAAGTCAATTGGAGGACTTTAACCATGACCTTTTTCCAGAAAAAAGAGCGAATTTTGCTACATGGAGATCCATCGTTGACCAAGGAAAAATAACATTCAAACGTTTATCCAAGGGATGGCAAGAAGGTGATCAGGGATACTTGATTGAGTTACGCGCACTAGTAGCAAAAAATGAAGAAGACGAAGGCTTAAAGGAACTGATGAACAATAACCTTCCAAACAAAATGAAGAGGTTGATATCCAAGTACAAAGAGGTATTTGATGCTCCAAAAGGACTTCCCCCTCATTGA

mRNA sequence

ATGGTGATGGAGACTGGTCGGAGAAGAAACGTCCGCAAGGAAGAAGAAAAACCCAAATGGCTGGCAGCGAAAAGAAAAAACCACGGGGAGGCGACAATTGACGGAGGCGACGGCGTGACAATGATTGGAAGATTCATGCTGGCACAAGAAGGAAGCCCTTGCGCCAAGTTCTTAGCGGGCAAACAGCATAACACAATGATGGAATATCGCAAGGAATTTGAAGAGCTCGCCGCACTAGCTGAAGTAAGATGTTTAAAACCTTTGGGCCTCGAACAAATAATGAAGACGACCCAACTGATCGAAGATCGAAATACCACTTGGGAAGCCTGCAAGGACCAAAGGAACTCCACAAACCAATCCAAGAATTCAGTTACAAGGATTGGTAGTCACAGAGGATTTTTTGCCAATAGAATTAGGAGAATTGGACCTCGTGTTAGGAATACAGTGGCTACGCACTTTGGGCTCAATGAAAGTCAATTGGAGGACTTTAACCATGACCTTTTTCCAGAAAAAAGAGCGAATTTTGCTACATGGAGATCCATCGTTGACCAAGGAAAAATAACATTCAAACGTTTATCCAAGGGATGGCAAGAAGGTGATCAGGGATACTTGATTGAGTTACGCGCACTAGTAGCAAAAAATGAAGAAGACGAAGGCTTAAAGGAACTGATGAACAATAACCTTCCAAACAAAATGAAGAGGTTGATATCCAAGTACAAAGAGGTATTTGATGCTCCAAAAGGACTTCCCCCTCATTGA

Coding sequence (CDS)

ATGGTGATGGAGACTGGTCGGAGAAGAAACGTCCGCAAGGAAGAAGAAAAACCCAAATGGCTGGCAGCGAAAAGAAAAAACCACGGGGAGGCGACAATTGACGGAGGCGACGGCGTGACAATGATTGGAAGATTCATGCTGGCACAAGAAGGAAGCCCTTGCGCCAAGTTCTTAGCGGGCAAACAGCATAACACAATGATGGAATATCGCAAGGAATTTGAAGAGCTCGCCGCACTAGCTGAAGTAAGATGTTTAAAACCTTTGGGCCTCGAACAAATAATGAAGACGACCCAACTGATCGAAGATCGAAATACCACTTGGGAAGCCTGCAAGGACCAAAGGAACTCCACAAACCAATCCAAGAATTCAGTTACAAGGATTGGTAGTCACAGAGGATTTTTTGCCAATAGAATTAGGAGAATTGGACCTCGTGTTAGGAATACAGTGGCTACGCACTTTGGGCTCAATGAAAGTCAATTGGAGGACTTTAACCATGACCTTTTTCCAGAAAAAAGAGCGAATTTTGCTACATGGAGATCCATCGTTGACCAAGGAAAAATAACATTCAAACGTTTATCCAAGGGATGGCAAGAAGGTGATCAGGGATACTTGATTGAGTTACGCGCACTAGTAGCAAAAAATGAAGAAGACGAAGGCTTAAAGGAACTGATGAACAATAACCTTCCAAACAAAATGAAGAGGTTGATATCCAAGTACAAAGAGGTATTTGATGCTCCAAAAGGACTTCCCCCTCATTGA

Protein sequence

MVMETGRRRNVRKEEEKPKWLAAKRKNHGEATIDGGDGVTMIGRFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAALAEVRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVTRIGSHRGFFANRIRRIGPRVRNTVATHFGLNESQLEDFNHDLFPEKRANFATWRSIVDQGKITFKRLSKGWQEGDQGYLIELRALVAKNEEDEGLKELMNNNLPNKMKRLISKYKEVFDAPKGLPPH

Homology

[Close]

BLAST of Lag0025854 vs. NCBI nr
Match: XP_022897442.1 (uncharacterized protein LOC111411108 [Olea europaea var. sylvestris])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-06
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 41  MIGRFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAA---------------------- 100
           ++ RF  +QEGS CA+FL+ +Q  T+ EYR+ FE LA+                      
Sbjct: 217 LLRRFRPSQEGSLCAQFLSLQQTTTVREYRRRFETLASPLLGISEEVMECSFLNGLRAEI 276

Query: 101 LAEVRCLKPLGLEQIMKTTQLIEDRN 105
            AEV+ L+PLGLEQIM+  Q++EDRN
Sbjct: 277 RAEVQLLRPLGLEQIMEVAQMVEDRN 302

[Close]

BLAST of Lag0025854 vs. NCBI nr
Match: XP_024017591.1 (uncharacterized protein LOC112090471 [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-05
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 41  MIGRFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAAL--------------------- 100
           ++ RF   QEG+ C KFL+  Q  T+ EYR++FE LAAL                     
Sbjct: 167 VLERFHSTQEGTLCEKFLSLHQETTVREYRRQFEMLAALLAEIPEQVLESAFVNGLKPEV 226

Query: 101 -AEVRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVT 126
            AEVR +KP GL +IM+ TQ +E+RN      K Q +S N    +++
Sbjct: 227 RAEVRMMKPNGLGRIMEFTQRVEERNQLVRGPKTQMSSFNSWNRNIS 273

[Close]

BLAST of Lag0025854 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-05
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 186 KITFKRLSKGWQEGDQGYLIELRALVAKNEEDEGLKELMNNNLPNKMKRLISKYKEVFDA 245
           ++T K+L++ W+  DQG+L+ELRA  A+ E  E ++ ++ N    +++ LI+ Y EVF  
Sbjct: 495 EVTLKKLARTWETHDQGFLVELRAFSAQPEGQEAIEAIIPNRRVQEIENLIAGYPEVFQP 554

Query: 246 PKGLPP 252
           P  LPP
Sbjct: 555 PSSLPP 560

[Close]

BLAST of Lag0025854 vs. NCBI nr
Match: RVX01070.1 (hypothetical protein CK203_022817 [Vitis vinifera])

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-04
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 44  RFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAA----------------------LAE 103
           RF   QEGS C +FLA +Q  TM+ YR+EFE LA                        AE
Sbjct: 124 RFRQTQEGSLCEQFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAE 183

Query: 104 VRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVTRIGSHRG 133
           +R LKP GL  +M+  Q +EDRN    A  +  N  N  K++     ++RG
Sbjct: 184 LRLLKPYGLGHLMEMAQRVEDRNLAMRAACEP-NGPNGPKSTKMLSSANRG 233

[Close]

BLAST of Lag0025854 vs. NCBI nr
Match: RVW41094.1 (hypothetical protein CK203_069772 [Vitis vinifera])

HSP 1 Score: 57.0 bits (136), Expect = 2.7e-04
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 44  RFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAA----------------------LAE 103
           RF   QEGS C +FLA +Q  TM+ YR+EFE LA                        AE
Sbjct: 124 RFRPTQEGSLCEQFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAE 183

Query: 104 VRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVTRIGSHRG 133
           +R LKP GL  +M+  Q +EDRN    A  +  N  N  K++     ++RG
Sbjct: 184 LRLLKPYGLGHLMEMAQRVEDRNLAMRAACEP-NGPNGPKSTKMLSSANRG 233

[Close]

BLAST of Lag0025854 vs. ExPASy TrEMBL
Match: A0A6J1DN22 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-05
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 186 KITFKRLSKGWQEGDQGYLIELRALVAKNEEDEGLKELMNNNLPNKMKRLISKYKEVFDA 245
           ++T K+L++ W+  DQG+L+ELRA  A+ E  E ++ ++ N    +++ LI+ Y EVF  
Sbjct: 495 EVTLKKLARTWETHDQGFLVELRAFSAQPEGQEAIEAIIPNRRVQEIENLIAGYPEVFQP 554

Query: 246 PKGLPP 252
           P  LPP
Sbjct: 555 PSSLPP 560

[Close]

BLAST of Lag0025854 vs. ExPASy TrEMBL
Match: A0A438IWF3 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_022817 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 44  RFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAA----------------------LAE 103
           RF   QEGS C +FLA +Q  TM+ YR+EFE LA                        AE
Sbjct: 124 RFRQTQEGSLCEQFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAE 183

Query: 104 VRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVTRIGSHRG 133
           +R LKP GL  +M+  Q +EDRN    A  +  N  N  K++     ++RG
Sbjct: 184 LRLLKPYGLGHLMEMAQRVEDRNLAMRAACEP-NGPNGPKSTKMLSSANRG 233

[Close]

BLAST of Lag0025854 vs. ExPASy TrEMBL
Match: A0A438E000 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069772 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 44  RFMLAQEGSPCAKFLAGKQHNTMMEYRKEFEELAA----------------------LAE 103
           RF   QEGS C +FLA +Q  TM+ YR+EFE LA                        AE
Sbjct: 124 RFRPTQEGSLCEQFLAVRQQGTMVAYRREFEILATPLKGISEEVMESTFMNGLLPEIRAE 183

Query: 104 VRCLKPLGLEQIMKTTQLIEDRNTTWEACKDQRNSTNQSKNSVTRIGSHRG 133
           +R LKP GL  +M+  Q +EDRN    A  +  N  N  K++     ++RG
Sbjct: 184 LRLLKPYGLGHLMEMAQRVEDRNLAMRAACEP-NGPNGPKSTKMLSSANRG 233

The following BLAST results are available for this feature:

BLAST of Lag0025854 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022897442.1	3.8e-06	41.86	uncharacterized protein LOC111411108 [Olea europaea var. sylvestris]	[more]
XP_024017591.1	3.2e-05	36.45	uncharacterized protein LOC112090471 [Morus notabilis]	[more]
XP_022154744.1	4.2e-05	39.39	uncharacterized protein LOC111021922 [Momordica charantia]	[more]
RVX01070.1	2.1e-04	36.04	hypothetical protein CK203_022817 [Vitis vinifera]	[more]
RVW41094.1	2.7e-04	36.04	hypothetical protein CK203_069772 [Vitis vinifera]	[more]

BLAST of Lag0025854 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0025854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN22	2.0e-05	39.39	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1	[more]
A0A438IWF3	1.0e-04	36.04	Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_022...	[more]
A0A438E000	1.3e-04	36.04	Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069...	[more]

BLAST of Lag0025854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025854.1	Lag0025854.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding