Lag0025784 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025784
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionmitochondrial fission protein ELM1
Locationchr10: 20372681 .. 20373610 (-)
RNA-Seq ExpressionLag0025784
SyntenyLag0025784
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCAATACGGCTAGCGGAGCCACCTAGCCCTACCATGGCCAAATCAGAAATCTTTGAAGGAGGTGTTTATGGCGTTATTAGGCGTGCGGTTGTCATCGGCAACGGGTCTTCTGGCTCTGAGAATCAGTGTATCGGTTTGGTTCAGGCGCTTGGCCTGGCTGACAAGCATGTGCGCTATGTAAGTTATGCGAATTCATCTTTTTCGAGGGTTGGAAGTAGTCTAGTTGTTTTGGTAATGGAAGTCACTGAAGTTTACTGTTTAATTGGGTGGGTTTTGCTCGAGGAATGCGCCGTTTTTGTTGTTACGTACATAGTGTTACCGCGCTTACGGGAATGGATGTTTTGTTTATCTAATAGTGAGAAAAAACTTCTGTATATCCACATTTAATGACCTTAGCAAAACCATAAACCAGAATTGCTCAATTTTTTAGTATTTGTGGACTTGTATAGTGAAATCCCGAGACTAACAATTCGCATTTAATATGTGCTACCGTCACATGCAGCGGGTTACAAGGCCTAGAGGAGGAATAAATGATTGGCTCCACTGGCTTCCAGTTTCTCTTCACAAAAAAATAGATTATATTATGTCCCAGATAGGTGTTTACACTCGGATTTTGTTGCGATCCAAAGGGAGGAAACTTGTGCCTCTATCTTCAGAAAATGGTGGTAGCATGGGCTTGTCATGCATTTTAGAAGCTGACTTGAAGCATATTGTATCGATGGCTCGGGAGACTTATGAAAAGTAAATTTGTTTTACAAATATCTTTACAGGGAATCTGATTATCAGACTTTATTTCTGATGAGTGCTTGTGTATTTTCCAGGGATGGACCTTTATTGGTAGTTGCATCTGGTAGGGATACCATAAATATTGCAAGTTCCATTAGACGCTTGGCATCAGAGAATGTTTTTGTTGTCCAAGTATGA

mRNA sequence

ATGAGGCCAATACGGCTAGCGGAGCCACCTAGCCCTACCATGGCCAAATCAGAAATCTTTGAAGGAGGTGTTTATGGCGTTATTAGGCGTGCGGTTGTCATCGGCAACGGGTCTTCTGGCTCTGAGAATCAGTGTATCGGTTTGGTTCAGGCGCTTGGCCTGGCTGACAAGCATGTGCGCTATCGGGTTACAAGGCCTAGAGGAGGAATAAATGATTGGCTCCACTGGCTTCCAGTTTCTCTTCACAAAAAAATAGATTATATTATGTCCCAGATAGGTGTTTACACTCGGATTTTGTTGCGATCCAAAGGGAGGAAACTTGTGCCTCTATCTTCAGAAAATGGTGGTAGCATGGGCTTGTCATGCATTTTAGAAGCTGACTTGAAGCATATTGTATCGATGGCTCGGGAGACTTATGAAAAGGATGGACCTTTATTGGTAGTTGCATCTGGTAGGGATACCATAAATATTGCAAGTTCCATTAGACGCTTGGCATCAGAGAATGTTTTTGTTGTCCAAGTATGA

Coding sequence (CDS)

ATGAGGCCAATACGGCTAGCGGAGCCACCTAGCCCTACCATGGCCAAATCAGAAATCTTTGAAGGAGGTGTTTATGGCGTTATTAGGCGTGCGGTTGTCATCGGCAACGGGTCTTCTGGCTCTGAGAATCAGTGTATCGGTTTGGTTCAGGCGCTTGGCCTGGCTGACAAGCATGTGCGCTATCGGGTTACAAGGCCTAGAGGAGGAATAAATGATTGGCTCCACTGGCTTCCAGTTTCTCTTCACAAAAAAATAGATTATATTATGTCCCAGATAGGTGTTTACACTCGGATTTTGTTGCGATCCAAAGGGAGGAAACTTGTGCCTCTATCTTCAGAAAATGGTGGTAGCATGGGCTTGTCATGCATTTTAGAAGCTGACTTGAAGCATATTGTATCGATGGCTCGGGAGACTTATGAAAAGGATGGACCTTTATTGGTAGTTGCATCTGGTAGGGATACCATAAATATTGCAAGTTCCATTAGACGCTTGGCATCAGAGAATGTTTTTGTTGTCCAAGTATGA

Protein sequence

MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVRYRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGLSCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV
Homology
[Close]
BLAST of Lag0025784 vs. NCBI nr
Match: XP_022927352.1 (mitochondrial fission protein ELM1 [Cucurbita moschata] >KAG6583715.1 Mitochondrial fission protein ELM1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019362.1 Mitochondrial fission protein ELM1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 157/174 (90.23%), Postives = 166/174 (95.40%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVR 60
           MRPIRL EPPSPTM K++IFEGGVYGVIRRA+VIGNGSSGSENQCIGLVQALGLADKHV 
Sbjct: 1   MRPIRLPEPPSPTMVKADIFEGGVYGVIRRAIVIGNGSSGSENQCIGLVQALGLADKHVL 60

Query: 61  YRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGL 120
           YRVTRPRGGIN+WLHWLPVSLHK++DYIM QIGVYTRILLRSK  KLVPLSSENGGSMGL
Sbjct: 61  YRVTRPRGGINEWLHWLPVSLHKRLDYIMIQIGVYTRILLRSKRTKLVPLSSENGGSMGL 120

Query: 121 SCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           SCILEADLKHIVSMA+ETYEKDGPLLVVASGRDTI IASSIRR+A ENVFVVQ+
Sbjct: 121 SCILEADLKHIVSMAKETYEKDGPLLVVASGRDTITIASSIRRMAKENVFVVQI 174

[Close]
BLAST of Lag0025784 vs. NCBI nr
Match: XP_023520710.1 (mitochondrial fission protein ELM1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 157/174 (90.23%), Postives = 166/174 (95.40%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVR 60
           MRPIRL EPPSPTM K++IFEGGVYGVIRRA+VIGNGSSGSENQCIGLVQALGLADKHV 
Sbjct: 1   MRPIRLPEPPSPTMVKADIFEGGVYGVIRRAIVIGNGSSGSENQCIGLVQALGLADKHVL 60

Query: 61  YRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGL 120
           YRVTRPRGGIN+WLHWLPVSLHK++DYIM QIGVYTRILLRSK  KLVPLSSENGGSMGL
Sbjct: 61  YRVTRPRGGINEWLHWLPVSLHKRLDYIMIQIGVYTRILLRSKRTKLVPLSSENGGSMGL 120

Query: 121 SCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           SCILEADLKHIVSMA+ETYEKDGPLLVVASGRDTI IASSIRR+A ENVFVVQ+
Sbjct: 121 SCILEADLKHIVSMAKETYEKDGPLLVVASGRDTITIASSIRRMAKENVFVVQI 174

[Close]
BLAST of Lag0025784 vs. NCBI nr
Match: XP_022973136.1 (mitochondrial fission protein ELM1 [Cucurbita maxima])

HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84
Identity = 156/174 (89.66%), Postives = 166/174 (95.40%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVR 60
           MRPIRL EPPSPTM K++IFEGGVYGVIRRA+VIGNGSSGSENQCIGLVQALGLADKHV 
Sbjct: 1   MRPIRLPEPPSPTMVKADIFEGGVYGVIRRAIVIGNGSSGSENQCIGLVQALGLADKHVL 60

Query: 61  YRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGL 120
           YRV+RPRGGIN+WLHWLPVSLHK++DYIM QIGVYTRILLRSK  KLVPLSSENGGSMGL
Sbjct: 61  YRVSRPRGGINEWLHWLPVSLHKRLDYIMIQIGVYTRILLRSKRTKLVPLSSENGGSMGL 120

Query: 121 SCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           SCILEADLKHIVSMA+ETYEKDGPLLVVASGRDTI IASSIRR+A ENVFVVQ+
Sbjct: 121 SCILEADLKHIVSMAKETYEKDGPLLVVASGRDTITIASSIRRMAKENVFVVQI 174

[Close]
BLAST of Lag0025784 vs. NCBI nr
Match: XP_038894297.1 (mitochondrial fission protein ELM1 [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84
Identity = 157/174 (90.23%), Postives = 164/174 (94.25%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVR 60
           MRPIRL EPPSPTMAK+EIFEG VYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHV 
Sbjct: 1   MRPIRLTEPPSPTMAKAEIFEGDVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVL 60

Query: 61  YRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGL 120
           YRVTRPRGGINDWLHWLPVSLHKK+DYIM+ IGVYTRIL+RS+GRKL+PLSSENGGS GL
Sbjct: 61  YRVTRPRGGINDWLHWLPVSLHKKLDYIMTLIGVYTRILMRSEGRKLMPLSSENGGSQGL 120

Query: 121 SCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           SCILEADLKHIVS  RETYEKDGPLLVVASGRDTI I SSIRRL SENVFVVQ+
Sbjct: 121 SCILEADLKHIVSTVRETYEKDGPLLVVASGRDTITITSSIRRLVSENVFVVQI 174

[Close]
BLAST of Lag0025784 vs. NCBI nr
Match: XP_004139495.1 (mitochondrial fission protein ELM1 [Cucumis sativus] >KAE8652813.1 hypothetical protein Csa_022781 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 156/174 (89.66%), Postives = 162/174 (93.10%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFEGGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHVR 60
           MRPIRL EP SPTMAK+EIFEGGVYGVIRRAVVIGNGS  +ENQCIGLVQALGLADKHV 
Sbjct: 1   MRPIRLREPSSPTMAKAEIFEGGVYGVIRRAVVIGNGSPCAENQCIGLVQALGLADKHVL 60

Query: 61  YRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLVPLSSENGGSMGL 120
           YRVTRPRGGINDWLHWLPVSLHKK+DYIM+ IGVYTR+LLRSKGRKLVPLSSENGGS GL
Sbjct: 61  YRVTRPRGGINDWLHWLPVSLHKKLDYIMTLIGVYTRVLLRSKGRKLVPLSSENGGSTGL 120

Query: 121 SCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           SCILEADLKHIVSM RETYEK GPLLVVASGRDTI I SSIRRL SENVFVVQ+
Sbjct: 121 SCILEADLKHIVSMVRETYEKSGPLLVVASGRDTITITSSIRRLVSENVFVVQI 174

[Close]
BLAST of Lag0025784 vs. ExPASy Swiss-Prot
Match: Q93YN4 (Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana OX=3702 GN=ELM1 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-62
Identity = 116/176 (65.91%), Postives = 147/176 (83.52%), Query Frame = 0 

Query: 1   MRPIRLAEPPSPTMAKSEIFE-GGVYGVIRRAVVIGNGSSGSENQCIGLVQALGLADKHV 60
           MRPI L +PPS +    +IFE GG + V+RRAVVIGNG  GSENQCIGLV+ALGL+D H+
Sbjct: 1   MRPILLPDPPSLSTGVPDIFEQGGSHNVVRRAVVIGNGFPGSENQCIGLVRALGLSDNHL 60

Query: 61  RYRVTRPRGGINDWLHWLPVSLHKKIDYIMSQIGVYTRILLRSKGRKLV-PLSSENGGSM 120
            YRVTRP+GG+N+WLHWLPV  HKK+D+I+  I +Y+R++L SK  K +  + SENGG++
Sbjct: 61  LYRVTRPKGGLNEWLHWLPVGFHKKLDFILRHIYLYSRLMLGSKQSKYISSVPSENGGNV 120

Query: 121 GLSCILEADLKHIVSMARETYEKDGPLLVVASGRDTINIASSIRRLASENVFVVQV 175
           GL+ ILEAD+K IV++AR+TYEKDGPL+V+A GRDTI+IASSIRRLASENVFVVQ+
Sbjct: 121 GLASILEADVKGIVNLARQTYEKDGPLIVIACGRDTISIASSIRRLASENVFVVQI 176

The following BLAST results are available for this feature:
BLAST of Lag0025784 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927352.11.4e-8490.23mitochondrial fission protein ELM1 [Cucurbita moschata] >KAG6583715.1 Mitochondr... [more]
XP_023520710.11.4e-8490.23mitochondrial fission protein ELM1 [Cucurbita pepo subsp. pepo][more]
XP_022973136.14.1e-8489.66mitochondrial fission protein ELM1 [Cucurbita maxima][more]
XP_038894297.14.1e-8490.23mitochondrial fission protein ELM1 [Benincasa hispida][more]
XP_004139495.11.0e-8289.66mitochondrial fission protein ELM1 [Cucumis sativus] >KAE8652813.1 hypothetical ... [more]
BLAST of Lag0025784 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93YN42.1e-6265.91Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana OX=3702 GN=ELM1 PE=1 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009367Mitochondrial fission protein ELM1-likePFAMPF06258Mito_fiss_Elm1coord: 40..174
e-value: 2.7E-19
score: 69.5
IPR009367Mitochondrial fission protein ELM1-likePANTHERPTHR33986OS02G0535700 PROTEINcoord: 1..174
NoneNo IPR availablePANTHERPTHR33986:SF2MITOCHONDRIAL FISSION PROTEIN ELM1coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025784.1Lag0025784.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000266 mitochondrial fission
cellular_component GO:0005741 mitochondrial outer membrane