Lag0025577 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025577
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosome associated membrane protein RAMP4
Location	chr10: 15581946 .. 15582299 (+)
RNA-Seq Expression	Lag0025577
Synteny	Lag0025577

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTGCTGAAATTGGGAGACCATTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCCAGAAGAATATCAGCAGAAGGGGTTTAGTTCCTCCAAGAAAGGATATGATTATTCAGTTGCTCCAATTCTTCTTGGCTTCTTCGTCTTCGTTGTTATTGGATCATGTGTGCCTTCTTCTTGCTTGCTTCTACGATTTCTTCTAATTCTCTCTAGAATGGTTACTTTCTGTTGTCTTGCGCCCTGCTACTGCTACGCCTTTTTCTTATACATCTTTATTCTTATCGAATCATGTAACCTAAGCACAGTTCAACTAGTTAAACCTTACATCCTCGAACAGTTGGTACGTTAG

mRNA sequence

ATGTGTTTGCTGAAATTGGGAGACCATTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCCAGAAGAATATCAGCAGAAGGGGTTTAGTTCCTCCAAGAAAGGATATGATTATTCAGTTGCTCCAATTCTTCTTGGCTTCTTCGTCTTCGTTGTTATTGGATCATGTGTGCCTTCTTCTTGCTTGCTTCTACGATTTCTTCTAATTCTCTCTAGAATGGTTACTTTCTGTTGTCTTGCGCCCTGCTACTGCTACGCCTTTTTCTTATACATCTTTATTCTTATCGAATCATGTAACCTAAGCACAGTTCAACTAGTTAAACCTTACATCCTCGAACAGTTGGTACGTTAG

Coding sequence (CDS)

ATGTGTTTGCTGAAATTGGGAGACCATTTCGAAGCGTGTAGCGGAGAGGAAAGTTGCCAAGTTCCAGAAGAATATCAGCAGAAGGGGTTTAGTTCCTCCAAGAAAGGATATGATTATTCAGTTGCTCCAATTCTTCTTGGCTTCTTCGTCTTCGTTGTTATTGGATCATGTGTGCCTTCTTCTTGCTTGCTTCTACGATTTCTTCTAATTCTCTCTAGAATGGTTACTTTCTGTTGTCTTGCGCCCTGCTACTGCTACGCCTTTTTCTTATACATCTTTATTCTTATCGAATCATGTAACCTAAGCACAGTTCAACTAGTTAAACCTTACATCCTCGAACAGTTGGTACGTTAG

Protein sequence

MCLLKLGDHFEACSGEESCQVPEEYQQKGFSSSKKGYDYSVAPILLGFFVFVVIGSCVPSSCLLLRFLLILSRMVTFCCLAPCYCYAFFLYIFILIESCNLSTVQLVKPYILEQLVR

Homology

The following BLAST results are available for this feature:

BLAST of Lag0025577 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0025577 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 31..58 e-value: 4.3E-8 score: 33.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025577.1	Lag0025577.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding