Lag0025525 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025525
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr10: 14424340 .. 14424825 (-)
RNA-Seq ExpressionLag0025525
SyntenyLag0025525
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCGGTTCTCTATGAGCGCTTGCCTGACTTCTGTTATGTGTGTGGATGCTTGGGGCATGTCAAGAGGGAATGCACAAGTGAGGCAGTTGTGAGCGCGGTGAGTGTGGGAGATCAGTATGGGGAGTGGATGCGAGCTGGGATGATGAGTGGAGAAGGGGCTCGGAGAAGGTATGAAGGCAAGGGGGATGAGGTTAAGGTTAGTGGGGATGAAGGGAGGGTACAGGTGGAGCAGGAAGGGGTAACCGGTGTGCCTCGGGTTGAACAGGATAGCCCACTTAGTGGTGGCCCGACGGTAGGAGAGGTGGTTCATTCAAGTCTTGATGTGGAGCAGGAACATGATGTGCACGGCCCGAATAAGGATCCGAAAGGTAAACAAAAGGTGGATGCCTTTCTGACCGCAAGAGAGCTGGGTATTGTGGATATGGAGGTATCAGAGCCCTTAGCCTCTGAGGGGGAGAAGTTTCTGCAATGGGTCAAGTGA

mRNA sequence

ATGGTGCCGGTTCTCTATGAGCGCTTGCCTGACTTCTGTTATGTGTGTGGATGCTTGGGGCATGTCAAGAGGGAATGCACAAGTGAGGCAGTTGTGAGCGCGGTGAGTGTGGGAGATCAGTATGGGGAGTGGATGCGAGCTGGGATGATGAGTGGAGAAGGGGCTCGGAGAAGGTATGAAGGCAAGGGGGATGAGGTTAAGGTTAGTGGGGATGAAGGGAGGGTACAGGTGGAGCAGGAAGGGGTAACCGGTGTGCCTCGGGTTGAACAGGATAGCCCACTTAGTGGTGGCCCGACGGTAGGAGAGGTGGTTCATTCAAGTCTTGATGTGGAGCAGGAACATGATGTGCACGGCCCGAATAAGGATCCGAAAGGTAAACAAAAGGTGGATGCCTTTCTGACCGCAAGAGAGCTGGGTATTGTGGATATGGAGGTATCAGAGCCCTTAGCCTCTGAGGGGGAGAAGTTTCTGCAATGGGTCAAGTGA

Coding sequence (CDS)

ATGGTGCCGGTTCTCTATGAGCGCTTGCCTGACTTCTGTTATGTGTGTGGATGCTTGGGGCATGTCAAGAGGGAATGCACAAGTGAGGCAGTTGTGAGCGCGGTGAGTGTGGGAGATCAGTATGGGGAGTGGATGCGAGCTGGGATGATGAGTGGAGAAGGGGCTCGGAGAAGGTATGAAGGCAAGGGGGATGAGGTTAAGGTTAGTGGGGATGAAGGGAGGGTACAGGTGGAGCAGGAAGGGGTAACCGGTGTGCCTCGGGTTGAACAGGATAGCCCACTTAGTGGTGGCCCGACGGTAGGAGAGGTGGTTCATTCAAGTCTTGATGTGGAGCAGGAACATGATGTGCACGGCCCGAATAAGGATCCGAAAGGTAAACAAAAGGTGGATGCCTTTCTGACCGCAAGAGAGCTGGGTATTGTGGATATGGAGGTATCAGAGCCCTTAGCCTCTGAGGGGGAGAAGTTTCTGCAATGGGTCAAGTGA

Protein sequence

MVPVLYERLPDFCYVCGCLGHVKRECTSEAVVSAVSVGDQYGEWMRAGMMSGEGARRRYEGKGDEVKVSGDEGRVQVEQEGVTGVPRVEQDSPLSGGPTVGEVVHSSLDVEQEHDVHGPNKDPKGKQKVDAFLTARELGIVDMEVSEPLASEGEKFLQWVK
Homology
BLAST of Lag0025525 vs. NCBI nr
Match: XP_035551148.1 (uncharacterized protein LOC118349711 [Juglans regia])

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-07
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 2   VPVLYERLPDFCYVCGCLGHVKRECTSEAVVSAVSVGDQYGEWMRAGMMSGEGARRRYEG 61
           +P+ YE+LP FC+ CGCL H K  C ++ V +     +QYG W+RA M  GE  +R  E 
Sbjct: 195 IPIRYEKLPRFCFSCGCLIHEKGGCENKNVGT-----EQYGVWLRADMKRGEKIKRERES 254

Query: 62  KGDEVKVSGDEGRVQVEQEGVTGVPRVEQDSPLSGGPTVGEVVHSSLDVEQEHDVHGPNK 121
                   G  G +QVE + V  + + ++   L+GG T G  +   L   +  ++     
Sbjct: 255 VNLMKNNVGKGGHIQVEGDDVANIEKGKKG--LNGGKTNG--MEEGLSEVESEEISAKEN 310

Query: 122 DPKGK 127
           + +GK
Sbjct: 315 EKEGK 310

BLAST of Lag0025525 vs. NCBI nr
Match: XP_018852674.2 (uncharacterized protein LOC109014626 [Juglans regia] >KAF5470642.1 hypothetical protein F2P56_011142 [Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 0

Query: 2   VPVLYERLPDFCYVCGCLGHVKRECTSEAVVSAVSVGDQYGEWMRAGMMSGEGARRRYE- 61
           +P+ YE LP FC+ CGCL H K  C +++V +     DQYG W+RA M  GE  +R  E 
Sbjct: 231 IPIRYENLPRFCFSCGCLIHEKGGCENKSVGT-----DQYGVWLRADMKRGEKTKREGES 290

Query: 62  --------GKGDEVKVSGDE-------------GRVQVEQEGVTGVPRVEQDSPLS--GG 121
                   GKG  ++V GD+             G+  V +EG++ V   E+ +  +   G
Sbjct: 291 VNLMKNNVGKGGHIQVEGDDAANIEKGKKGLNGGKTNVMEEGLSEVELEERSAKENEKEG 350

Query: 122 PTVGEVVHSSLDVEQEHDVHGPN--KDPKGKQKVDAFLTARELGIVDMEVSEPLASEGE 155
              GEV+ +      +   +G    K+  G +K    +   + G ++  + + + ++GE
Sbjct: 351 KLNGEVISNKHVEAVKIRTNGEEVMKEGIGYEKELIIVDEEQKGDLNETIQDLIINKGE 404

BLAST of Lag0025525 vs. NCBI nr
Match: XP_035551145.1 (uncharacterized protein LOC118349709 [Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 0

Query: 2   VPVLYERLPDFCYVCGCLGHVKRECTSEAVVSAVSVGDQYGEWMRAGMMSGEGARRRYEG 61
           +P+ YE+LP FC+ CGCL H K  C ++ V +     +QYG W+RA M  GE  +R  E 
Sbjct: 195 IPIRYEKLPRFCFSCGCLIHEKGGCENKNVGT-----EQYGVWLRADMKRGEKIKREGES 254

Query: 62  KGDEVKVSGDEGRVQVEQEGVTGVPRVEQDSPLSGGPTVGEVVHSSLDVEQEHDVHGPNK 121
                   G  G +QVE + V  + + ++   L+GG T G  +   L   +  ++     
Sbjct: 255 VNLMKNNVGKGGHIQVEGDDVANIEKGKKG--LNGGKTNG--MEEGLSEVESEEISAKEN 310

Query: 122 DPKGK 127
           + +GK
Sbjct: 315 EKEGK 310

BLAST of Lag0025525 vs. NCBI nr
Match: XP_015382973.1 (uncharacterized protein LOC107175758 [Citrus sinensis] >XP_024046618.1 uncharacterized protein LOC112100973 [Citrus clementina])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 0

Query: 2   VPVLYERLPDFCYVCGCLGHVKRECTSEAVVSAVSVGDQYGEWMRAGMMSGE-GARRRYE 61
           +PVLYERLPDFC+VCGC+GH  +EC      +   +   YG W+RA  M+ +    R  E
Sbjct: 230 MPVLYERLPDFCFVCGCIGHQYKECAQYKNQARKEMA--YGPWLRAITMAEKLRMNRGRE 289

Query: 62  GKGDEVKVSGDEGRVQVEQEGVTGVPRVEQDSPLSGGPTVGEVVHSSLDVEQEHDVHGPN 121
              +E     +EG++    E  T + R +     S   + GE+  S    ++E +  GP 
Sbjct: 290 RWKNEANKQSNEGQIHTRGEAGTDLQRHQARDSNSDPESEGELTRS----QEEENTGGPR 349

Query: 122 ----KDPKGKQK 129
               ++PK  +K
Sbjct: 350 MGEARNPKKSEK 355

BLAST of Lag0025525 vs. NCBI nr
Match: TXG46781.1 (hypothetical protein EZV62_026075 [Acer yangbiense])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 0

Query: 1   MVPVLYERLPDFCYVCGCLGHVKREC-TSEAVVSAV-SVGDQYGEWMR------AGMMSG 60
           + P++YERLP FCY CG LGHV REC   EA + A+  V  Q+G W+R            
Sbjct: 196 VAPLIYERLPKFCYACGKLGHVLRECPNDEARIDALEGVSTQFGAWLRVPGPDVGKQKPQ 255

Query: 61  EGARRRYEGKGDEVKVSGDEGRVQVEQEGVTGVPRVEQDSPLSGGPTVGEVVHSSLDVEQ 114
           +   ++  G GD   +S  +G  +   E   G+   +  +  + G +VG     S +V +
Sbjct: 256 KSMGQQSSGSGDGKSISVSDGSTRGNDECRVGINHTQSTAGDASGGSVGRSTSKSGEVHR 315

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_035551148.18.4e-0732.00uncharacterized protein LOC118349711 [Juglans regia][more]
XP_018852674.21.1e-0627.93uncharacterized protein LOC109014626 [Juglans regia] >KAF5470642.1 hypothetical ... [more]
XP_035551145.11.1e-0632.00uncharacterized protein LOC118349709 [Juglans regia][more]
XP_015382973.11.9e-0632.58uncharacterized protein LOC107175758 [Citrus sinensis] >XP_024046618.1 uncharact... [more]
TXG46781.11.2e-0531.40hypothetical protein EZV62_026075 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 2..27
e-value: 1.2E-9
score: 37.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 13..28
score: 9.257132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025525.1Lag0025525.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding