Lag0025483 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025483
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr10: 13761190 .. 13761739 (-)
RNA-Seq Expression	Lag0025483
Synteny	Lag0025483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGTTTAGATTCCCTAAGAATATTTGTGAAGATATTACAAGAAGCTTTGCTAGGTTTTGGTGGGGTTCTAGTGACGAGAAAAGAAAGCTTCACTGGTGTAAATGGGATAAACTATTCCTTCCTAAGAGTTTAGGAGGTCTTAATTTTAGGGATATAGAAGGGTTTAATAAGACCCTCTTAGCTAAACAGGCTTGGAGAATTATTAAAAATCCTAACTCATTCGATATTAAATTACCTGACAGATTTTAGAAGAACAAATGTGTCGGAGGTGTTGAAGAATAATCCTAGTCCTTCTACGGATCCGTCATCTACGCATCTGAATATCCCCTCTCCAGAATCTGATGCCTTGAGAATTTTCGTTGATGCGGCATGGACTTCCAATCCCCCTAAAACTGGTATTGGACTGGTTTGCTTCAATCAGAGAGGTAGTTTGGAAGGAGCAGCGACTTCATTTTTTGATTTGGATTTTAAAGCTCCCCTTGCTGAGCTGAAAGCCATAAACGAGGGTCTAAAGCTGGCAAAAGCTTTTGCATGTTCAAAGTAG

mRNA sequence

ATGAGTGTGTTTAGATTCCCTAAGAATATTTGTGAAGATATTACAAGAAGCTTTGCTAGGTTTTGGTGGGGTTCTAGTGACGAGAAAAGAAAGCTTCACTGGTGTAAATGGGATAAACTATTCCTTCCTAAGAGTTTAGGAGATTTTAGAAGAACAAATGTGTCGGAGGTGTTGAAGAATAATCCTAGTCCTTCTACGGATCCGTCATCTACGCATCTGAATATCCCCTCTCCAGAATCTGATGCCTTGAGAATTTTCGTTGATGCGGCATGGACTTCCAATCCCCCTAAAACTGGTATTGGACTGGTTTGCTTCAATCAGAGAGGTAGTTTGGAAGGAGCAGCGACTTCATTTTTTGATTTGGATTTTAAAGCTCCCCTTGCTGAGCTGAAAGCCATAAACGAGGGTCTAAAGCTGGCAAAAGCTTTTGCATGTTCAAAGTAG

Coding sequence (CDS)

ATGAGTGTGTTTAGATTCCCTAAGAATATTTGTGAAGATATTACAAGAAGCTTTGCTAGGTTTTGGTGGGGTTCTAGTGACGAGAAAAGAAAGCTTCACTGGTGTAAATGGGATAAACTATTCCTTCCTAAGAGTTTAGGAGATTTTAGAAGAACAAATGTGTCGGAGGTGTTGAAGAATAATCCTAGTCCTTCTACGGATCCGTCATCTACGCATCTGAATATCCCCTCTCCAGAATCTGATGCCTTGAGAATTTTCGTTGATGCGGCATGGACTTCCAATCCCCCTAAAACTGGTATTGGACTGGTTTGCTTCAATCAGAGAGGTAGTTTGGAAGGAGCAGCGACTTCATTTTTTGATTTGGATTTTAAAGCTCCCCTTGCTGAGCTGAAAGCCATAAACGAGGGTCTAAAGCTGGCAAAAGCTTTTGCATGTTCAAAGTAG

Protein sequence

MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSEVLKNNPSPSTDPSSTHLNIPSPESDALRIFVDAAWTSNPPKTGIGLVCFNQRGSLEGAATSFFDLDFKAPLAELKAINEGLKLAKAFACSK

Homology

[Close]

BLAST of Lag0025483 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-10
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG 48
          MSVFR PK  CE++++ FARFWWGSS++ +KLHW  W+++ LPK LG
Sbjct: 30 MSVFRLPKGFCEEVSQMFARFWWGSSNDTKKLHWMSWERMCLPKELG 76

[Close]

BLAST of Lag0025483 vs. NCBI nr
Match: XP_024163724.1 (uncharacterized protein LOC112170610 [Rosa chinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLGDFRRTNVSE 57
           MSVF+  KN CED+    ARFWWGS+D+KRK+HW  W+KL LPK  G     ++S+
Sbjct: 67  MSVFQLTKNFCEDLELMCARFWWGSTDDKRKIHWKSWEKLCLPKEEGGLGFQSLSD 122

[Close]

BLAST of Lag0025483 vs. NCBI nr
Match: XP_006487889.1 (uncharacterized protein LOC102617714 [Citrus sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 8.2e-09
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1   MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG-----DFRRTNVS 60
           MSVF+ P +ICEDI ++ ARFWWGSS ++R +HW KW+KL   K  G     DF   N +
Sbjct: 730 MSVFKLPASICEDIQKAIARFWWGSSSDRRGIHWAKWEKLCQAKMRGGMGFRDFTSFNQA 789

[Close]

BLAST of Lag0025483 vs. NCBI nr
Match: XP_013639569.1 (PREDICTED: uncharacterized protein LOC106344806 [Brassica oleracea var. oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 1   MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG 48
           MSVF+ PK IC++I+ + A FWWGS   K+K+HW  WDK  LPK +G
Sbjct: 610 MSVFKLPKTICDNISSAMANFWWGSDAHKKKIHWIAWDKFCLPKDIG 656

[Close]

BLAST of Lag0025483 vs. NCBI nr
Match: XP_018479968.1 (PREDICTED: uncharacterized protein LOC108851032 [Raphanus sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKLFLPKSLG 48
           MSVFR PK IC +I  + A +WWG+ +  RK+HW  WDKL LPK +G
Sbjct: 394 MSVFRLPKTICSNIASAMANYWWGADEHLRKIHWLSWDKLCLPKEIG 440

[Close]

BLAST of Lag0025483 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 18/40 (45.00%), Postives = 24/40 (60.00%), Query Frame = 0


Query: 1  MSVFRFPKNICEDITRSFARFWWGSSDEKRKLHWCKWDKL 41
          MS FR  K +C+ +T +   FWW S + KRK+ W  W KL
Sbjct: 8  MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKL 47

The following BLAST results are available for this feature:

BLAST of Lag0025483 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131662.1	1.5e-10	59.57	uncharacterized protein LOC111004787 [Momordica charantia]	[more]
XP_024163724.1	1.6e-09	53.57	uncharacterized protein LOC112170610 [Rosa chinensis]	[more]
XP_006487889.1	8.2e-09	48.44	uncharacterized protein LOC102617714 [Citrus sinensis]	[more]
XP_013639569.1	1.1e-08	55.32	PREDICTED: uncharacterized protein LOC106344806 [Brassica oleracea var. oleracea...	[more]
XP_018479968.1	1.4e-08	55.32	PREDICTED: uncharacterized protein LOC108851032 [Raphanus sativus]	[more]

BLAST of Lag0025483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	2.5e-05	45.00	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 87..142 e-value: 1.7E-5 score: 24.6
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 82..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025483.1	Lag0025483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity