Lag0025411 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025411
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 12626491 .. 12629055 (+)
RNA-Seq Expression	Lag0025411
Synteny	Lag0025411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAACGACGGTATGTTTGCTTCTCCCCTTTAGATTTAGATCTAATAAACTTTGTATGCTTAGCCTTAAGTTTGTATAGAATTTGTTCTATGTTTTAACCAATGCAATAGTATTTTTGGATAAACAAAATTAACTACGAATCGGTCCCAATTACGCTTCCGCTTTAATGGAATTGGGGAATTCCAAATCCTTACAAGAAAGTCTTTCTATCACTAATAGAGATAGATTCTATCCTTCTATCCTATTTCTATCAGTGTTTGGTTGTTATATCACTCTTTTTTTTCTTATTTTTTAGATGATGAAGCAAGAGCTTGAGGAGAAAAGCGCAAAAAGAAAACTAAAATACAAAGGGGAAACATCCAAAAAAATGAAGAAACAGAAGGTACTATTTCTATTTCTATTTCAGTTCTATCAATAGATAATAGATTCAAAATTCTGTGATATATGTTTTTCCTTTTTTTGCTTTTGTTTTTATTAAACAGGTCAACACTTTAATAATGGCCAGAGAGGATTGGGTTCCAATCCACAAAATCAGTTTGTACTTAAACCTCTCAATAATTGACCATATCAAAACTTTAAGTGACTCTTGCATTAAACAGTTTAGGAGTGACCCATTTGGACACTTCTTAGATTTTAAGATGAAAAAAGTCCCTTTACAACTAATTACACACCTCATTAGGAGGTTGTGTTATTCCCCAAAAAGTGATACGCTAGTCTTTAACCTTGAAGGAAATGTCATAGAATTTGGGTTGAAGGAATTTTCCATTATCACTGGATTAAACTGTAATCCATTTCCAGCTGAAAACATTGACGATGGCGATGAGCTTGAGTCTGGTATTAAAAAAGTTTTTTCAAACATAATGATACTATCGATAAAAGGGACTTAGTCACGGGCTTTAGTTTCTGTCGAAGTCTTCCGTTAGATGATTCTTTGATTGTCAGATTTTCTCATTGATATTTACTAGAATGTCTCCTAGTGCCAAAACAACCTCATAATAGGATTAGTTGAAGACATGTAAAACTCTTTGACAATCAAGAATCAATAGAAAATTATCCATGGGGGAGGTTGTGTCATGAGCTTACTGTGGAATATATATAAAAAAAGCCTCCAAAAACATCTCAGGGTCTATCTATTTGCAAGGAATTCCAATAGTCCTTGTTTACTGGGCATTGGAAATTATTCCAAAATTGTCTGATGTAAGCCTAGGCTTTGTTAGAAAAATCCAAAGGCCGACCCCCACCCCACGGATAGCTGAATGGGAGATGCTTGATGTCCTTGATTGGAGCGACCTAGAAGAAAATGTTTTCTCTGCCAATGATGTAAGTGTTTTCAACTAATTTACTTTTTAATTCTTATTTAATTCTTATCTCTTTCACTTCTTTCAGTCACTGATGGAATTTTATCAATGAACTGATAGAGTTCTATCAGTGAACTTTCTATCAGTGACTGATAGAGTTCTATCAGTGACTGATAGAATTCTATCAGTTTAGTTATAGAGTTCTATCAGTTCACTGATAGAAGATAGAATTCTATCAGTTCACTTATAGAATCCTATTAGTGACAGATAGAATAGTTCACTTATAGAATTCTATCAGTTCTATCGCTGATTGAATTCTATCAGTGATAGAACTGATAGAATCCAACAGTGATAGAGTTCTATTTCTATCACTGACAGAAACTATCAGTGACTTGGTAAAAAACTAATTTTTTTTTTTATTTCAGTTCTCTGTTGTGCCATTAGTGCCAAATGATACAGAAATGACATAAAAAAATATGGCATATTTCATTAAAGAAATGGAGAAGGAGTAACAAGAAAGATTGGAAAAAGAAAAAATAGAAATGGAAAAGAAGAGGAAAAGGGAACTTGAAAAAGAAGAAGAAGAAAAAAGGAGAAGAGAAGAAGAGAAAAAAGAGAAGTAGAAAGAAATGAAAAGGAAAAAAGTAGGATATCAATCTTAGAAGATGATATCAAAACCTTAAAGGAAGGGCAAAAGGAACTCAAAAAGGCCAAAACGAGATCCTACGATTGTTAAACAGTTTGGTGGAAATTGTCACAGACAAATTTCCACCCAAAGATATTTCTGAAAAACAATCCCAGGAATCTCTACACAAAAATTGTCCTCCAACTTCTAGCCTTGAGAAATTAGAATTCATAAATGCAGCAGAGAGATTCGTAGATGCTGCTGAAAATGCTGAAAATATCAATGCAGACCATATTGACCATATTGACATTGATAGGATGGTCAATTTTGCAACCATATATGCTGAAAAAGAGGTAAAGTTATCACCTTATGTTTTTTTTCATATCAGTATATTCTTCTCATTAATTTATGTTGTTCTCATTTCAGAAAGAAGTTAATGATGATGAAGAAACAGGAGAAGAGGGAGGAGAAGAAGGAGAAAAAGAAGAGAAGGAAAAAGAAAATGAAATGGATGAAGAAGAAAAAGAAAATGAAATGGATGAAGAAGAAGGAAAGAATGAAAAAGGAAAAAGAAGGGGTTAA

mRNA sequence

ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAACGACGGAAATGTCATAGAATTTGGGTTGAAGGAATTTTCCATTATCACTGGATTAAACTGTAATCCATTTCCAGCTGAAAACATTGACGATGGCGATGAGCTTGAGTCTGGGTCTATCTATTTGCAAGGAATTCCAATAGTCCTTGTTTACTGGGCATTGGAAATTATTCCAAAATTGTCTGATGTAAGCCTAGGCTTTGTTAGAAAAATCCAAAGGCCGACCCCCACCCCACGGATAGCTGAATGGGAGATGCTTGATGTCCTTGATTGGAGCGACCTAGAAGAAAATGTTTTCTCTGCCAATGATGAATCTCTACACAAAAATTGTCCTCCAACTTCTAGCCTTGAGAAATTAGAATTCATAAATGCAGCAGAGAGATTCGTAGATGCTGCTGAAAATGCTGAAAATATCAATGCAGACCATATTGACCATATTGACATTGATAGGATGGTCAATTTTGCAACCATATATGCTGAAAAAGAGAAAGAAGTTAATGATGATGAAGAAACAGGAGAAGAGGGAGGAGAAGAAGGAGAAAAAGAAGAGAAGGAAAAAGAAAATGAAATGGATGAAGAAGAAAAAGAAAATGAAATGGATGAAGAAGAAGGAAAGAATGAAAAAGGAAAAAGAAGGGGTTAA

Coding sequence (CDS)

ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCTTGAAGTATTCAGAGTCGTCAACGACGGAAATGTCATAGAATTTGGGTTGAAGGAATTTTCCATTATCACTGGATTAAACTGTAATCCATTTCCAGCTGAAAACATTGACGATGGCGATGAGCTTGAGTCTGGGTCTATCTATTTGCAAGGAATTCCAATAGTCCTTGTTTACTGGGCATTGGAAATTATTCCAAAATTGTCTGATGTAAGCCTAGGCTTTGTTAGAAAAATCCAAAGGCCGACCCCCACCCCACGGATAGCTGAATGGGAGATGCTTGATGTCCTTGATTGGAGCGACCTAGAAGAAAATGTTTTCTCTGCCAATGATGAATCTCTACACAAAAATTGTCCTCCAACTTCTAGCCTTGAGAAATTAGAATTCATAAATGCAGCAGAGAGATTCGTAGATGCTGCTGAAAATGCTGAAAATATCAATGCAGACCATATTGACCATATTGACATTGATAGGATGGTCAATTTTGCAACCATATATGCTGAAAAAGAGAAAGAAGTTAATGATGATGAAGAAACAGGAGAAGAGGGAGGAGAAGAAGGAGAAAAAGAAGAGAAGGAAAAAGAAAATGAAATGGATGAAGAAGAAAAAGAAAATGAAATGGATGAAGAAGAAGGAAAGAATGAAAAAGGAAAAAGAAGGGGTTAA

Protein sequence

MVVFFVVAEQSRIILEVFRVVNDGNVIEFGLKEFSIITGLNCNPFPAENIDDGDELESGSIYLQGIPIVLVYWALEIIPKLSDVSLGFVRKIQRPTPTPRIAEWEMLDVLDWSDLEENVFSANDESLHKNCPPTSSLEKLEFINAAERFVDAAENAENINADHIDHIDIDRMVNFATIYAEKEKEVNDDEETGEEGGEEGEKEEKEKENEMDEEEKENEMDEEEGKNEKGKRRG

Homology

[Close]

BLAST of Lag0025411 vs. NCBI nr
Match: KAE8652228.1 (hypothetical protein Csa_022353 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-07
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 43  NPFPAENIDDGDELESGS-IYLQGIPIVLVYWALEIIPKLSDVSLGFVRKIQRPTPTPRI 102
           N   ++      ELES S  +LQG PIVL YWA +I+P+L++   G+V +I +    PRI
Sbjct: 27  NAVKSKRKSKNSELESKSCTFLQGFPIVLAYWAYKILPQLAN---GYVTRIGK--GCPRI 86

Query: 103 AEWEMLDVLDWSDLEENVFSANDESLHKNCPPTSSLEKLEFINAAER 149
             W+ +  +DW DLE NVF   + SL  N     S    E I+ ++R
Sbjct: 87  LNWKSIVQVDWQDLEANVFLEKNVSLTVNHHVICSFTINETISISDR 128

The following BLAST results are available for this feature:

BLAST of Lag0025411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652228.1	4.2e-07	38.32	hypothetical protein Csa_022353 [Cucumis sativus]	[more]

BLAST of Lag0025411 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0025411 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0025411 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 197..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025411.1	Lag0025411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome