Lag0025320 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025320
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF4283 domain-containing protein
Locationchr10: 11284669 .. 11285196 (-)
RNA-Seq ExpressionLag0025320
SyntenyLag0025320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCATCATATGGGGGGTGGTTAAAAGTTCGTAATCTTCCTCCAGACAAATGGTCTATAGAAACGTTCAAACAGATTGGAGACGTCTGTGGGGGATATCTGGAAACAGCTACCAAAACCTTAACCAGAATGGACATGATGGAGGTAGGGATAAAGGTAAAGAATAACCACACAGGCTTCATCCCTGCCGAGGTGCATATTCCTTCATCTTCTAATAGCCCAATTAAGGTTGTTATCGACCCATTCTTCGTGGAAGATTACAATATTGGTTATATCACCGGCATCCATGGAAAAATTCCGGCAGCCTCGACGACAAAAGAAGATCCTCACGCCGAAATAAATAAAAAAGAAGATGGTAAAAAGGTTATGTCCGGTCCACGCGCTGCCGTTGGAAAGGGGAATGGAAAAGGGGTTGATCCCCAAATCTCGTACAGTTTCGCTGCCCAAGAAGTACCTACCAGTGTACTATGTGCAGAAGAAGATCAGACTCCAACAGACAGGGGCCCACACCCTATAGATAACTAG

mRNA sequence

ATGGTTCCATCATATGGGGGGTGGTTAAAAGTTCGTAATCTTCCTCCAGACAAATGGTCTATAGAAACGTTCAAACAGATTGGAGACGTCTGTGGGGGATATCTGGAAACAGCTACCAAAACCTTAACCAGAATGGACATGATGGAGGTAGGGATAAAGGTAAAGAATAACCACACAGGCTTCATCCCTGCCGAGGTGCATATTCCTTCATCTTCTAATAGCCCAATTAAGGTTGTTATCGACCCATTCTTCGTGGAAGATTACAATATTGGTTATATCACCGGCATCCATGGAAAAATTCCGGCAGCCTCGACGACAAAAGAAGATCCTCACGCCGAAATAAATAAAAAAGAAGATGGTAAAAAGGTTATGTCCGGTCCACGCGCTGCCGTTGGAAAGGGGAATGGAAAAGGGGTTGATCCCCAAATCTCGTACAGTTTCGCTGCCCAAGAAGTACCTACCAGTGTACTATGTGCAGAAGAAGATCAGACTCCAACAGACAGGGGCCCACACCCTATAGATAACTAG

Coding sequence (CDS)

ATGGTTCCATCATATGGGGGGTGGTTAAAAGTTCGTAATCTTCCTCCAGACAAATGGTCTATAGAAACGTTCAAACAGATTGGAGACGTCTGTGGGGGATATCTGGAAACAGCTACCAAAACCTTAACCAGAATGGACATGATGGAGGTAGGGATAAAGGTAAAGAATAACCACACAGGCTTCATCCCTGCCGAGGTGCATATTCCTTCATCTTCTAATAGCCCAATTAAGGTTGTTATCGACCCATTCTTCGTGGAAGATTACAATATTGGTTATATCACCGGCATCCATGGAAAAATTCCGGCAGCCTCGACGACAAAAGAAGATCCTCACGCCGAAATAAATAAAAAAGAAGATGGTAAAAAGGTTATGTCCGGTCCACGCGCTGCCGTTGGAAAGGGGAATGGAAAAGGGGTTGATCCCCAAATCTCGTACAGTTTCGCTGCCCAAGAAGTACCTACCAGTGTACTATGTGCAGAAGAAGATCAGACTCCAACAGACAGGGGCCCACACCCTATAGATAACTAG

Protein sequence

MVPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTGFIPAEVHIPSSSNSPIKVVIDPFFVEDYNIGYITGIHGKIPAASTTKEDPHAEINKKEDGKKVMSGPRAAVGKGNGKGVDPQISYSFAAQEVPTSVLCAEEDQTPTDRGPHPIDN
Homology
BLAST of Lag0025320 vs. NCBI nr
Match: QWT43305.1 (kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-24
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 2   VPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTGF 61
           VPSYG W+K+RNL  D+WS +TFK IG++CGGY+ET+ KTL RMDMME  +KVK N  GF
Sbjct: 240 VPSYGSWIKIRNLLIDQWSYDTFKLIGELCGGYIETSKKTLARMDMMEASLKVKMNKNGF 299

Query: 62  IPAEVHIPSSSNSPIKVVIDPFFVEDYNIGYITGIHG 99
           +PA + + S+S   + V +DPFF  D +IGYI  + G
Sbjct: 300 LPAIIQLLSTSAFSMAVQMDPFFDLDLHIGYIAAVMG 336

BLAST of Lag0025320 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 2   VPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTGF 61
           VPSYGGW+KVR +P   W++E+F QIGD CGG++E A +T    D++E  I+VK+N++GF
Sbjct: 211 VPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGF 270

Query: 62  IPAEVHIPSSSNSPIKVVIDPFFVEDYNIGYITGIHGKIPAASTTKED 110
           IPA + +         + +       +++G    IHG     +  + D
Sbjct: 271 IPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFD 318

BLAST of Lag0025320 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 1   MVPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTG 60
           ++PSYGGW+KVR +P   W++E+F QIGD CGG++E A +T    D+ E  IK+K+N+TG
Sbjct: 281 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYTG 340

Query: 61  FIPAEVHI 69
           FIPA + +
Sbjct: 341 FIPAYIKL 348

BLAST of Lag0025320 vs. NCBI nr
Match: KAA0047508.1 (putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative amidohydrolase ytcJ [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-14
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = 0

Query: 1  MVPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTG 60
          MVPSYGGW   + LP   W++ +++QIGD CGG +E +  T+ + D++EV +K+++N+TG
Sbjct: 1  MVPSYGGWTSFKGLPLTAWNMNSYRQIGDACGGLVEVSKSTMRKTDLIEVRLKIRHNYTG 60

Query: 61 FIPAEVHIPSSSNS 75
          FIPA+++I  S  +
Sbjct: 61 FIPAQINIKDSKGN 74

BLAST of Lag0025320 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-14
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 1   MVPSYGGWLKVRNLPPDKWSIETFKQIGDVCGGYLETATKTLTRMDMMEVGIKVKNNHTG 60
           ++PSYGGW+KVR +P   W++E+F QIGD CGG++E A +T    D+ E  IK+K+N++G
Sbjct: 265 VIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYSG 324

Query: 61  FIPAEVHI 69
           FIPA + +
Sbjct: 325 FIPAYIKL 332

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QWT43305.13.7e-2455.67kinesin-related protein KIN7C [Citrullus lanatus subsp. vulgaris][more]
ADN33672.11.5e-1437.04hypothetical protein [Cucumis melo subsp. melo][more]
KAA0040039.12.0e-1451.47hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
KAA0047508.12.6e-1444.59putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative ami... [more]
KAA0039967.15.9e-1450.00hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 8..47
e-value: 9.2E-7
score: 28.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025320.1Lag0025320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0016491 oxidoreductase activity