Lag0025310 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025310
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 11163717 .. 11164208 (+)
RNA-Seq ExpressionLag0025310
SyntenyLag0025310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCATAATGCAAAAAGTCTCCTCTTTTACACGTTTGCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTGCTTCTTCTCATCTTCACCTTCCATGTCCCAACATGTCGTTTCTTCTCTTACTTACTTTTCACAAGGCCTTCTCTCTACTACAATTGTGCTGGCCATAATAAGGTACTCTGCAATTCCATTGCAATATCCAGACCCAAGAGGTTGGCTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACTCGGGAGGACTCGGCAGGAGTCGCTGCTGGGACGTGGGGTTCTCAGGGCTTCCGTGTTCCGACCATTTCGGAGCACAAGGCAGACGCTGGAGAAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATATTGCTGCTATTCAACATGGCTCAACGGCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTGTGTGA

mRNA sequence

ATGATTCCCATAATGCAAAAAGTCTCCTCTTTTACACGTTTGCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTGCTTCTTCTCATCTTCACCTTCCATGTCCCAACATGTCGTTTCTTCTCTTACTTACTTTTCACAAGGCCTTCTCTCTACTACAATTGTGCTGGCCATAATAAGGTACTCTGCAATTCCATTGCAATATCCAGACCCAAGAGGTTGGCTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACTCGGGAGGACTCGGCAGGAGTCGCTGCTGGGACGTGGGGTTCTCAGGGCTTCCGTGTTCCGACCATTTCGGAGCACAAGGCAGACGCTGGAGAAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATATTGCTGCTATTCAACATGGCTCAACGGCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTGTGTGA

Coding sequence (CDS)

ATGATTCCCATAATGCAAAAAGTCTCCTCTTTTACACGTTTGCTTACTTCCGATCCCTCACCCTTCCCTTCTCTTCTCCTGCTTCTTCTCATCTTCACCTTCCATGTCCCAACATGTCGTTTCTTCTCTTACTTACTTTTCACAAGGCCTTCTCTCTACTACAATTGTGCTGGCCATAATAAGGTACTCTGCAATTCCATTGCAATATCCAGACCCAAGAGGTTGGCTTGTGGTGGTTGGGCTTTACGAGCGGCACCAATTGCCTTACTCGTGGTGGTGAGTTGGTTGACTCGGGAGGACTCGGCAGGAGTCGCTGCTGGGACGTGGGGTTCTCAGGGCTTCCGTGTTCCGACCATTTCGGAGCACAAGGCAGACGCTGGAGAAATTGGTGGCTGTACTCCTTGGGTTCTTGTGGGAATGATATTGCTGCTATTCAACATGGCTCAACGGCAGGCTCTCATTCGGCATTGCTTGTTTGTAAGAAGTGTGTGA

Protein sequence

MIPIMQKVSSFTRLLTSDPSPFPSLLLLLLIFTFHVPTCRFFSYLLFTRPSLYYNCAGHNKVLCNSIAISRPKRLACGGWALRAAPIALLVVVSWLTREDSAGVAAGTWGSQGFRVPTISEHKADAGEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSV
Homology
[Close]
BLAST of Lag0025310 vs. NCBI nr
Match: KAE8653331.1 (hypothetical protein Csa_023242 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 4.4e-64
Identity = 129/164 (78.66%), Postives = 141/164 (85.98%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTRLLTSDPSPFPSLLLLLLIFTFHVPTCRFFSYLLF-TRPSLYYNCAGH 60
           MIPIMQKVSSFT  LTSDPSPFPSLLLLLLIFTFH+  CRFFSY  F   P  YYNC G+
Sbjct: 1   MIPIMQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGN 60

Query: 61  NKVLCNSIAISRPKRLACGGWALRAAPIALLVVVSWLTREDSAGVAAGTWGSQGFRVPTI 120
           +K+LCN I IS P+RL  GGWALRAAPIALLVVVSWL++++SAGVAA  W SQGFRV TI
Sbjct: 61  HKILCNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTI 120

Query: 121 SEHKADAGEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSV 164
           SEHKA+  EIGGCTPWVLVGMI+LLFNMAQRQALIRHCLFVRS+
Sbjct: 121 SEHKAEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of Lag0025310 vs. NCBI nr
Match: KAA0043344.1 (hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK02674.1 hypothetical protein E5676_scaffold1734G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 4.1e-62
Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTRLLTSDPSPFPSLLLLLLIFTFHVPTCRFFSYLLFT-RPSLYYNCAGH 60
           MIP+MQKV SFT  LTSDPSPFPSLLL+LLIFTFH+P CRFFSY  F   P  YYNC G+
Sbjct: 1   MIPMMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGN 60

Query: 61  NKVLCNSIAISRPKRLACGGWALRAAPIALLVVVSWLTREDSAGVAAGTWGSQGFRVPTI 120
           +K+LCN I  S P+RL  GGWALRAAPIALLVVVSWL++++SAGVAA  WGSQG  V TI
Sbjct: 61  HKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTI 120

Query: 121 SEHKADAGEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFVRSV 164
           SEHKA+  EIGGCTPWVLVG+I+LLFNMAQRQALIRHCLFVRS+
Sbjct: 121 SEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 164

[Close]
BLAST of Lag0025310 vs. NCBI nr
Match: KAG6573437.1 (hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 120/163 (73.62%), Postives = 133/163 (81.60%), Query Frame = 0 

Query: 1   MIPIMQKVSSFTRLLTSDPSPFPSLLLLLLIFTFHVPTCRFFSYLLFTRPSLYYNCAGHN 60
           MIPIM K+SS T  LTSDPSPFPSLLLLLLIFT H+PTCRFFSY L   PSLYY+CAG +
Sbjct: 1   MIPIMPKLSSLTHSLTSDPSPFPSLLLLLLIFTLHIPTCRFFSYFLSASPSLYYHCAGRS 60

Query: 61  KVLCNSIAISRPKRLACGGWALRAAPIALLVVVSWLTREDSAGVAAGTWGSQGFRVPTI- 120
             LCN +A+S PKRL CGGW+LR APIALLVVVSWLT +D+ GVAA  WGS+   VPTI 
Sbjct: 61  NWLCNPMAMSSPKRLPCGGWSLRVAPIALLVVVSWLTEKDAEGVAARNWGSRCCHVPTIL 120

Query: 121 --SEHKADAGEIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 161
              +H+ +A  IGGCTPWVLVGMILLLFNMAQRQALIRHCLFV
Sbjct: 121 DMRKHETEAEGIGGCTPWVLVGMILLLFNMAQRQALIRHCLFV 163

The following BLAST results are available for this feature:
BLAST of Lag0025310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653331.14.4e-6478.66hypothetical protein Csa_023242 [Cucumis sativus][more]
KAA0043344.14.1e-6275.61hypothetical protein E6C27_scaffold110G002580 [Cucumis melo var. makuwa] >TYK026... [more]
KAG6573437.11.9e-5973.62hypothetical protein SDJN03_27324, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lag0025310 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025310.1Lag0025310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane