Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGGTAAATCCTATCTTCCCTATTTGGCAAAAATATAATTGAACGTTGATGAGTTGGATCTACTCTTCTTTGAATGAGGATAAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA
mRNA sequence
ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA
Coding sequence (CDS)
ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA
Protein sequence
MASTSSSSSSTMDIFHTLPTSSSALTIPIPTPGLSSTSITTTPVSTPIAAQRTSTRAPNTNPNTTARPLNPNIPPFSSTFQHYPNVSSSFPFPNSSTQAGFQFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPKYLDAAETQLGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLSFPSS
Homology
BLAST of Lag0025249 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 238.8 bits (608), Expect = 6.5e-59
Identity = 126/247 (51.01%), Postives = 168/247 (68.02%), Query Frame = 0
Query: 102 QFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHI 161
QFPPP+ + L+ PP NP+PTL PLN+KL+D+N+LLWKNQLLN +
Sbjct: 2 QFPPPTPNFLA-----------QPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61
Query: 162 IAFDMEGFING-MPPPPKYLD---------------------------AAETQLGEIIGC 221
IA + G+++G + PPP++LD +E ++GE++
Sbjct: 62 IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121
Query: 222 STASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPL 281
T +IW L VY+S +TARIMGL+++LQ + KDG SVSQYLA+IK+I DKF+ +GEPL
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 181
Query: 282 SYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQ 321
SYRDHL ++L+GLG+EYN FVTSI NR+D PSL DVRSLLLAY ARL+KQ++V+QLN+ Q
Sbjct: 182 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 237
BLAST of Lag0025249 vs. NCBI nr
Match:
XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])
HSP 1 Score: 191.0 bits (484), Expect = 1.6e-44
Identity = 93/137 (67.88%), Postives = 116/137 (84.67%), Query Frame = 0
Query: 187 LGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKF 246
+GEI+G +A +IWE LR VYESSS A IMG SQLQKI KDGL+VSQYLAQIKD++D F
Sbjct: 1 MGEIVGYESAFDIWEALRTVYESSSIAPIMGFCSQLQKIKKDGLTVSQYLAQIKDVLDNF 60
Query: 247 SVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSV 306
+ IGEPLSYRDHL YILEGLG+EYNPFV+SI NR++RPS+ADVR+LL+ Y +RLEKQ++
Sbjct: 61 AAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTNRPSIADVRNLLITYDSRLEKQTAT 120
Query: 307 EQLNMVQANLANLSFPS 324
+ L ++QAN+A+LS S
Sbjct: 121 DHLQLIQANVAHLSINS 137
BLAST of Lag0025249 vs. NCBI nr
Match:
PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])
HSP 1 Score: 165.2 bits (417), Expect = 9.1e-37
Identity = 96/223 (43.05%), Postives = 133/223 (59.64%), Query Frame = 0
Query: 126 PPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPP-PPKYLDAAE 185
PP P P++ P IKL NYL+WKNQLLN IIA +E FI+G P PP++ D A
Sbjct: 37 PPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPAR 96
Query: 186 -------------------------TQ--LGEIIGCSTASEIWEHLRVVYESSSTARIMG 245
TQ +G+I+G ++A EIWE L +Y SSS A+I
Sbjct: 97 QIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITE 156
Query: 246 LRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSI 305
LR++LQ + KDGL+ +Y+ + K+I + + +GEP+S +DHL Y+ GL EYN FVTSI
Sbjct: 157 LRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSI 216
Query: 306 QNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLS 321
R D L ++ SLLL+Y RLE Q++ QL+ +QANLA+L+
Sbjct: 217 TKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLN 259
BLAST of Lag0025249 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 163.3 bits (412), Expect = 3.5e-36
Identity = 110/244 (45.08%), Postives = 143/244 (58.61%), Query Frame = 0
Query: 103 FPP-PSSHTLSFFQPFNTSPQYFPPPQ--QPQNPYPTLTPPLNIKLSDSNYLLWKNQLLN 162
FPP P+S++ + T+ P PQ Q P P+L+ L+IKL ++N LL K+QLLN
Sbjct: 4 FPPTPASNSNT-----TTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLN 63
Query: 163 HIIAFDMEGFIN-GMPPPPKYLDAAETQ---------------------------LGEII 222
IIA +E FI+ PPKYLDAA Q +G+I+
Sbjct: 64 VIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIV 123
Query: 223 GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGE 282
STA +IW L YES S A +M L SQLQ+I K + +S+YL+++K + D+F+ IGE
Sbjct: 124 EYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGE 183
Query: 283 PLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNM 316
PLSYRD L ILEGL EY+ FVTSI NRSDRPSL +V SLL Y RL ++S + LN
Sbjct: 184 PLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNF 242
BLAST of Lag0025249 vs. NCBI nr
Match:
GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])
HSP 1 Score: 161.4 bits (407), Expect = 1.3e-35
Identity = 92/232 (39.66%), Postives = 137/232 (59.05%), Query Frame = 0
Query: 104 PPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIA 163
PPP+S+ L N +PQ P P++ PL +KL D NY++WK QLLN +IA
Sbjct: 16 PPPTSNPLPSSSIPNPNPQILNTSPLPN--MPSINQPLAVKLDDHNYIIWKEQLLNIVIA 75
Query: 164 FDMEGFINGMPP-PPKYLDAA---------------------------ETQLGEIIGCST 223
+E F++G PP++LD E+ LG+I+G ++
Sbjct: 76 NGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTS 135
Query: 224 ASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSY 283
AS+IWE L +Y ++S A + LR+ LQ I K+GL+ Y+ + + + + + IGEP++Y
Sbjct: 136 ASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTY 195
Query: 284 RDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVE 308
DHL Y L GLG +YNPFVTSIQ+++ RPS+ +V SLLL+Y ARLE+QS+ +
Sbjct: 196 TDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0025249 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 80.5 bits (197), Expect = 3.9e-14
Identity = 50/191 (26.18%), Postives = 92/191 (48.17%), Query Frame = 0
Query: 144 KLSDSNYLLWKNQLLNHIIAFDMEGFING---MPPPPKYLDAA----------------- 203
KL+ +NYL+W Q+ +++ GF++G MPP DAA
Sbjct: 25 KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84
Query: 204 -ETQLGEI--------IGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQ 263
LG I +TA++IWE LR +Y + S + LR+QL++ +K ++
Sbjct: 85 YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144
Query: 264 YLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLL 306
Y+ + D+ +++G+P+ + + + +LE L EY P + I + P+L ++ LL
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204
BLAST of Lag0025249 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 126/247 (51.01%), Postives = 168/247 (68.02%), Query Frame = 0
Query: 102 QFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHI 161
QFPPP+ + L+ PP NP+PTL PLN+KL+D+N+LLWKNQLLN +
Sbjct: 2 QFPPPTPNFLA-----------QPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61
Query: 162 IAFDMEGFING-MPPPPKYLD---------------------------AAETQLGEIIGC 221
IA + G+++G + PPP++LD +E ++GE++
Sbjct: 62 IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121
Query: 222 STASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPL 281
T +IW L VY+S +TARIMGL+++LQ + KDG SVSQYLA+IK+I DKF+ +GEPL
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 181
Query: 282 SYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQ 321
SYRDHL ++L+GLG+EYN FVTSI NR+D PSL DVRSLLLAY ARL+KQ++V+QLN+ Q
Sbjct: 182 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 237
BLAST of Lag0025249 vs. ExPASy TrEMBL
Match:
A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 96/223 (43.05%), Postives = 133/223 (59.64%), Query Frame = 0
Query: 126 PPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPP-PPKYLDAAE 185
PP P P++ P IKL NYL+WKNQLLN IIA +E FI+G P PP++ D A
Sbjct: 37 PPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPAR 96
Query: 186 -------------------------TQ--LGEIIGCSTASEIWEHLRVVYESSSTARIMG 245
TQ +G+I+G ++A EIWE L +Y SSS A+I
Sbjct: 97 QIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITE 156
Query: 246 LRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSI 305
LR++LQ + KDGL+ +Y+ + K+I + + +GEP+S +DHL Y+ GL EYN FVTSI
Sbjct: 157 LRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSI 216
Query: 306 QNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLS 321
R D L ++ SLLL+Y RLE Q++ QL+ +QANLA+L+
Sbjct: 217 TKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLN 259
BLAST of Lag0025249 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 110/244 (45.08%), Postives = 143/244 (58.61%), Query Frame = 0
Query: 103 FPP-PSSHTLSFFQPFNTSPQYFPPPQ--QPQNPYPTLTPPLNIKLSDSNYLLWKNQLLN 162
FPP P+S++ + T+ P PQ Q P P+L+ L+IKL ++N LL K+QLLN
Sbjct: 4 FPPTPASNSNT-----TTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLN 63
Query: 163 HIIAFDMEGFIN-GMPPPPKYLDAAETQ---------------------------LGEII 222
IIA +E FI+ PPKYLDAA Q +G+I+
Sbjct: 64 VIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIV 123
Query: 223 GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGE 282
STA +IW L YES S A +M L SQLQ+I K + +S+YL+++K + D+F+ IGE
Sbjct: 124 EYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGE 183
Query: 283 PLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNM 316
PLSYRD L ILEGL EY+ FVTSI NRSDRPSL +V SLL Y RL ++S + LN
Sbjct: 184 PLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNF 242
BLAST of Lag0025249 vs. ExPASy TrEMBL
Match:
A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 6.4e-36
Identity = 92/232 (39.66%), Postives = 137/232 (59.05%), Query Frame = 0
Query: 104 PPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIA 163
PPP+S+ L N +PQ P P++ PL +KL D NY++WK QLLN +IA
Sbjct: 16 PPPTSNPLPSSSIPNPNPQILNTSPLPN--MPSINQPLAVKLDDHNYIIWKEQLLNIVIA 75
Query: 164 FDMEGFINGMPP-PPKYLDAA---------------------------ETQLGEIIGCST 223
+E F++G PP++LD E+ LG+I+G ++
Sbjct: 76 NGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTS 135
Query: 224 ASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSY 283
AS+IWE L +Y ++S A + LR+ LQ I K+GL+ Y+ + + + + + IGEP++Y
Sbjct: 136 ASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTY 195
Query: 284 RDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVE 308
DHL Y L GLG +YNPFVTSIQ+++ RPS+ +V SLLL+Y ARLE+QS+ +
Sbjct: 196 TDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245
BLAST of Lag0025249 vs. ExPASy TrEMBL
Match:
A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 2.8e-31
Identity = 90/253 (35.57%), Postives = 139/253 (54.94%), Query Frame = 0
Query: 105 PPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTP-------PLNIKLSDSNYLLWKNQL 164
P + T++ Q NT+ PP + P+L P +++KL D+NYL+W+ Q+
Sbjct: 21 PIQNPTITNTQNPNTTA---APPISASSSSPSLPPNFSSFNQTISVKLDDTNYLVWRMQM 80
Query: 165 LNHIIAFDMEGFING-------MPPPPK---------------------YLDAAETQLGE 224
N IIA +EG+I+G P Y +++ LG+
Sbjct: 81 QNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWLYASLSDSMLGQ 140
Query: 225 IIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVI 284
I+G +TA+EIW L Y ++S AR R LQ + KD L+ S YL ++K + + + +
Sbjct: 141 IVGFTTATEIWVSLERTYSATSFARSFDFRMALQNLKKDRLNASAYLQKLKTLCNTLASV 200
Query: 285 GEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQL 323
G+P+S ++HL Y+L GLG EYN FVT I R +P++ +V +LLL+Y ARLE+Q++
Sbjct: 201 GDPISSQEHLTYLLNGLGLEYNAFVTPILARPVKPTIEEVHALLLSYEARLERQNAAASP 260
BLAST of Lag0025249 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 72.0 bits (175), Expect = 9.8e-13
Identity = 42/181 (23.20%), Postives = 84/181 (46.41%), Query Frame = 0
Query: 140 PLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPKYLD------------------ 199
P+ + + +SNY W+ L H ++FD+ G I+G P D
Sbjct: 21 PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKRDGIVKLSLYGTL 80
Query: 200 AAETQLGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKD 259
+ G + ST+ +IW ++ + ++ AR + L S+L+ + V+ Y ++K
Sbjct: 81 TPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKK 140
Query: 260 IVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLE 303
+ D + P++ R+ + Y+L GL +++ + I++R PS D ++L RL+
Sbjct: 141 LADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK 200
BLAST of Lag0025249 vs. TAIR 10
Match:
AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 71.2 bits (173), Expect = 1.7e-12
Identity = 50/200 (25.00%), Postives = 95/200 (47.50%), Query Frame = 0
Query: 141 LNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPK-----------------YLDAA 200
+ + L+ NY +W+ ++F + G I+G P Y
Sbjct: 24 VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKRWKERDGLVKMWIYGTIT 83
Query: 201 ETQLGEII--GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKD 260
++ L II GC TA ++W L ++ + AR + ++L+ + D LSV +Y ++K
Sbjct: 84 DSLLDTIIKVGC-TARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKS 143
Query: 261 IVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLE 320
+ D + + P+S R + ++L GL +Y+ + I+++S PS + RS+LL +RL
Sbjct: 144 LSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESRLS 203
Query: 321 KQSSVEQLNMVQANLANLSF 322
+S + +L+N+ F
Sbjct: 204 NKSKSSLSHTNHPSLSNVLF 222
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 6.5e-59 | 51.01 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
XP_038887133.1 | 1.6e-44 | 67.88 | uncharacterized protein LOC120077323 [Benincasa hispida] | [more] |
PON47862.1 | 9.1e-37 | 43.05 | hypothetical protein TorRG33x02_321990 [Trema orientale] | [more] |
RVW69807.1 | 3.5e-36 | 45.08 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
GFY85402.1 | 1.3e-35 | 39.66 | hypothetical protein Acr_04g0001400 [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Q94HW2 | 3.9e-14 | 26.18 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 3.2e-59 | 51.01 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A2P5BGF8 | 4.4e-37 | 43.05 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... | [more] |
A0A438GC62 | 1.7e-36 | 45.08 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A0A7J0EGI5 | 6.4e-36 | 39.66 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1 | [more] |
A0A803NL56 | 2.8e-31 | 35.57 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G34070.1 | 9.8e-13 | 23.20 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
AT5G48050.1 | 1.7e-12 | 25.00 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |