Lag0025249 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025249
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr10: 10465586 .. 10466641 (-)
RNA-Seq ExpressionLag0025249
SyntenyLag0025249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGGTAAATCCTATCTTCCCTATTTGGCAAAAATATAATTGAACGTTGATGAGTTGGATCTACTCTTCTTTGAATGAGGATAAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA

mRNA sequence

ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA

Coding sequence (CDS)

ATGGCTTCAACCTCTAGCTCATCGTCGTCCACCATGGATATCTTTCACACCCTGCCGACGTCTTCCTCTGCTCTTACCATTCCTATTCCAACACCTGGGCTTTCGTCAACCTCTATCACCACCACCCCTGTGTCGACACCTATCGCTGCTCAGCGCACCTCCACCAGAGCACCAAATACCAATCCAAACACAACTGCCCGACCCTTAAACCCTAACATTCCCCCTTTCTCTTCGACTTTTCAGCATTATCCCAATGTTTCTTCATCTTTTCCTTTTCCCAATTCTTCGACTCAGGCCGGTTTCCAGTTTCCTCCACCTTCTTCCCATACTCTTTCCTTCTTCCAGCCCTTTAATACCTCACCTCAGTATTTTCCACCACCTCAACAACCTCAGAATCCATATCCCACTCTCACTCCTCCCCTGAATATCAAGCTCTCTGACTCGAACTACCTCTTGTGGAAGAATCAGCTGCTGAACCACATTATTGCCTTCGACATGGAAGGTTTCATTAACGGTATGCCTCCCCCTCCCAAGTATCTAGATGCTGCTGAAACACAGCTAGGTGAAATTATAGGCTGCTCTACTGCTTCTGAAATCTGGGAACACCTTAGAGTGGTGTATGAGTCTTCTTCCACAGCTAGGATCATGGGGTTACGGTCTCAATTGCAGAAAATTAGTAAGGATGGTCTATCGGTTTCACAATACTTGGCTCAAATTAAGGACATAGTAGACAAATTTTCGGTCATAGGTGAACCATTATCCTATAGAGATCATCTAGGGTACATACTTGAAGGTCTCGGTACCGAATATAATCCTTTCGTAACCTCCATACAAAATCGCAGTGATCGTCCATCGCTAGCTGATGTCCGCAGTCTTCTTCTTGCATATGTAGCCAGGCTTGAAAAACAATCCTCCGTTGAGCAGCTGAATATGGTTCAGGCCAACCTCGCTAACCTATCTTTCCCCTCCTCTTAA

Protein sequence

MASTSSSSSSTMDIFHTLPTSSSALTIPIPTPGLSSTSITTTPVSTPIAAQRTSTRAPNTNPNTTARPLNPNIPPFSSTFQHYPNVSSSFPFPNSSTQAGFQFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPKYLDAAETQLGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLSFPSS
Homology
BLAST of Lag0025249 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 6.5e-59
Identity = 126/247 (51.01%), Postives = 168/247 (68.02%), Query Frame = 0

Query: 102 QFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHI 161
           QFPPP+ + L+            PP     NP+PTL  PLN+KL+D+N+LLWKNQLLN +
Sbjct: 2   QFPPPTPNFLA-----------QPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61

Query: 162 IAFDMEGFING-MPPPPKYLD---------------------------AAETQLGEIIGC 221
           IA  + G+++G + PPP++LD                            +E ++GE++  
Sbjct: 62  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121

Query: 222 STASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPL 281
            T  +IW  L  VY+S +TARIMGL+++LQ + KDG SVSQYLA+IK+I DKF+ +GEPL
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 181

Query: 282 SYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQ 321
           SYRDHL ++L+GLG+EYN FVTSI NR+D PSL DVRSLLLAY ARL+KQ++V+QLN+ Q
Sbjct: 182 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 237

BLAST of Lag0025249 vs. NCBI nr
Match: XP_038887133.1 (uncharacterized protein LOC120077323 [Benincasa hispida])

HSP 1 Score: 191.0 bits (484), Expect = 1.6e-44
Identity = 93/137 (67.88%), Postives = 116/137 (84.67%), Query Frame = 0

Query: 187 LGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKF 246
           +GEI+G  +A +IWE LR VYESSS A IMG  SQLQKI KDGL+VSQYLAQIKD++D F
Sbjct: 1   MGEIVGYESAFDIWEALRTVYESSSIAPIMGFCSQLQKIKKDGLTVSQYLAQIKDVLDNF 60

Query: 247 SVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSV 306
           + IGEPLSYRDHL YILEGLG+EYNPFV+SI NR++RPS+ADVR+LL+ Y +RLEKQ++ 
Sbjct: 61  AAIGEPLSYRDHLSYILEGLGSEYNPFVSSIHNRTNRPSIADVRNLLITYDSRLEKQTAT 120

Query: 307 EQLNMVQANLANLSFPS 324
           + L ++QAN+A+LS  S
Sbjct: 121 DHLQLIQANVAHLSINS 137

BLAST of Lag0025249 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 165.2 bits (417), Expect = 9.1e-37
Identity = 96/223 (43.05%), Postives = 133/223 (59.64%), Query Frame = 0

Query: 126 PPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPP-PPKYLDAAE 185
           PP  P    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G  P PP++ D A 
Sbjct: 37  PPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPAR 96

Query: 186 -------------------------TQ--LGEIIGCSTASEIWEHLRVVYESSSTARIMG 245
                                    TQ  +G+I+G ++A EIWE L  +Y SSS A+I  
Sbjct: 97  QIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITE 156

Query: 246 LRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSI 305
           LR++LQ + KDGL+  +Y+ + K+I +  + +GEP+S +DHL Y+  GL  EYN FVTSI
Sbjct: 157 LRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSI 216

Query: 306 QNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLS 321
             R D   L ++ SLLL+Y  RLE Q++  QL+ +QANLA+L+
Sbjct: 217 TKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLN 259

BLAST of Lag0025249 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-36
Identity = 110/244 (45.08%), Postives = 143/244 (58.61%), Query Frame = 0

Query: 103 FPP-PSSHTLSFFQPFNTSPQYFPPPQ--QPQNPYPTLTPPLNIKLSDSNYLLWKNQLLN 162
           FPP P+S++ +      T+    P PQ  Q   P P+L+  L+IKL ++N LL K+QLLN
Sbjct: 4   FPPTPASNSNT-----TTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLN 63

Query: 163 HIIAFDMEGFIN-GMPPPPKYLDAAETQ---------------------------LGEII 222
            IIA  +E FI+     PPKYLDAA  Q                           +G+I+
Sbjct: 64  VIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIV 123

Query: 223 GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGE 282
             STA +IW  L   YES S A +M L SQLQ+I K  + +S+YL+++K + D+F+ IGE
Sbjct: 124 EYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGE 183

Query: 283 PLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNM 316
           PLSYRD L  ILEGL  EY+ FVTSI NRSDRPSL +V SLL  Y  RL ++S  + LN 
Sbjct: 184 PLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNF 242

BLAST of Lag0025249 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-35
Identity = 92/232 (39.66%), Postives = 137/232 (59.05%), Query Frame = 0

Query: 104 PPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIA 163
           PPP+S+ L      N +PQ       P    P++  PL +KL D NY++WK QLLN +IA
Sbjct: 16  PPPTSNPLPSSSIPNPNPQILNTSPLPN--MPSINQPLAVKLDDHNYIIWKEQLLNIVIA 75

Query: 164 FDMEGFINGMPP-PPKYLDAA---------------------------ETQLGEIIGCST 223
             +E F++G    PP++LD                             E+ LG+I+G ++
Sbjct: 76  NGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTS 135

Query: 224 ASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSY 283
           AS+IWE L  +Y ++S A +  LR+ LQ I K+GL+   Y+ + + + +  + IGEP++Y
Sbjct: 136 ASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTY 195

Query: 284 RDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVE 308
            DHL Y L GLG +YNPFVTSIQ+++ RPS+ +V SLLL+Y ARLE+QS+ +
Sbjct: 196 TDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

BLAST of Lag0025249 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-14
Identity = 50/191 (26.18%), Postives = 92/191 (48.17%), Query Frame = 0

Query: 144 KLSDSNYLLWKNQLLNHIIAFDMEGFING---MPPPPKYLDAA----------------- 203
           KL+ +NYL+W  Q+      +++ GF++G   MPP     DAA                 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 204 -ETQLGEI--------IGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQ 263
               LG I           +TA++IWE LR +Y + S   +  LR+QL++ +K   ++  
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDD 144

Query: 264 YLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLL 306
           Y+  +    D+ +++G+P+ + + +  +LE L  EY P +  I  +   P+L ++   LL
Sbjct: 145 YMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLL 204

BLAST of Lag0025249 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 126/247 (51.01%), Postives = 168/247 (68.02%), Query Frame = 0

Query: 102 QFPPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHI 161
           QFPPP+ + L+            PP     NP+PTL  PLN+KL+D+N+LLWKNQLLN +
Sbjct: 2   QFPPPTPNFLA-----------QPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61

Query: 162 IAFDMEGFING-MPPPPKYLD---------------------------AAETQLGEIIGC 221
           IA  + G+++G + PPP++LD                            +E ++GE++  
Sbjct: 62  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121

Query: 222 STASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPL 281
            T  +IW  L  VY+S +TARIMGL+++LQ + KDG SVSQYLA+IK+I DKF+ +GEPL
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPL 181

Query: 282 SYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQ 321
           SYRDHL ++L+GLG+EYN FVTSI NR+D PSL DVRSLLLAY ARL+KQ++V+QLN+ Q
Sbjct: 182 SYRDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQ 237

BLAST of Lag0025249 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 96/223 (43.05%), Postives = 133/223 (59.64%), Query Frame = 0

Query: 126 PPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPP-PPKYLDAAE 185
           PP  P    P++  P  IKL   NYL+WKNQLLN IIA  +E FI+G  P PP++ D A 
Sbjct: 37  PPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGLEDFIDGSRPCPPRFTDPAR 96

Query: 186 -------------------------TQ--LGEIIGCSTASEIWEHLRVVYESSSTARIMG 245
                                    TQ  +G+I+G ++A EIWE L  +Y SSS A+I  
Sbjct: 97  QIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFEIWEALNQIYTSSSLAKITE 156

Query: 246 LRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSI 305
           LR++LQ + KDGL+  +Y+ + K+I +  + +GEP+S +DHL Y+  GL  EYN FVTSI
Sbjct: 157 LRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDHLLYLFGGLDREYNAFVTSI 216

Query: 306 QNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNMVQANLANLS 321
             R D   L ++ SLLL+Y  RLE Q++  QL+ +QANLA+L+
Sbjct: 217 TKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAHLN 259

BLAST of Lag0025249 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 110/244 (45.08%), Postives = 143/244 (58.61%), Query Frame = 0

Query: 103 FPP-PSSHTLSFFQPFNTSPQYFPPPQ--QPQNPYPTLTPPLNIKLSDSNYLLWKNQLLN 162
           FPP P+S++ +      T+    P PQ  Q   P P+L+  L+IKL ++N LL K+QLLN
Sbjct: 4   FPPTPASNSNT-----TTNNNQNPAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLN 63

Query: 163 HIIAFDMEGFIN-GMPPPPKYLDAAETQ---------------------------LGEII 222
            IIA  +E FI+     PPKYLDAA  Q                           +G+I+
Sbjct: 64  VIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIV 123

Query: 223 GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGE 282
             STA +IW  L   YES S A +M L SQLQ+I K  + +S+YL+++K + D+F+ IGE
Sbjct: 124 EYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGE 183

Query: 283 PLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQLNM 316
           PLSYRD L  ILEGL  EY+ FVTSI NRSDRPSL +V SLL  Y  RL ++S  + LN 
Sbjct: 184 PLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNF 242

BLAST of Lag0025249 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-36
Identity = 92/232 (39.66%), Postives = 137/232 (59.05%), Query Frame = 0

Query: 104 PPPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTPPLNIKLSDSNYLLWKNQLLNHIIA 163
           PPP+S+ L      N +PQ       P    P++  PL +KL D NY++WK QLLN +IA
Sbjct: 16  PPPTSNPLPSSSIPNPNPQILNTSPLPN--MPSINQPLAVKLDDHNYIIWKEQLLNIVIA 75

Query: 164 FDMEGFINGMPP-PPKYLDAA---------------------------ETQLGEIIGCST 223
             +E F++G    PP++LD                             E+ LG+I+G ++
Sbjct: 76  NGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVGYTS 135

Query: 224 ASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVIGEPLSY 283
           AS+IWE L  +Y ++S A +  LR+ LQ I K+GL+   Y+ + + + +  + IGEP++Y
Sbjct: 136 ASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEPVTY 195

Query: 284 RDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVE 308
            DHL Y L GLG +YNPFVTSIQ+++ RPS+ +V SLLL+Y ARLE+QS+ +
Sbjct: 196 TDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

BLAST of Lag0025249 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-31
Identity = 90/253 (35.57%), Postives = 139/253 (54.94%), Query Frame = 0

Query: 105 PPSSHTLSFFQPFNTSPQYFPPPQQPQNPYPTLTP-------PLNIKLSDSNYLLWKNQL 164
           P  + T++  Q  NT+     PP    +  P+L P        +++KL D+NYL+W+ Q+
Sbjct: 21  PIQNPTITNTQNPNTTA---APPISASSSSPSLPPNFSSFNQTISVKLDDTNYLVWRMQM 80

Query: 165 LNHIIAFDMEGFING-------MPPPPK---------------------YLDAAETQLGE 224
            N IIA  +EG+I+G        P                         Y   +++ LG+
Sbjct: 81  QNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWLYASLSDSMLGQ 140

Query: 225 IIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKDIVDKFSVI 284
           I+G +TA+EIW  L   Y ++S AR    R  LQ + KD L+ S YL ++K + +  + +
Sbjct: 141 IVGFTTATEIWVSLERTYSATSFARSFDFRMALQNLKKDRLNASAYLQKLKTLCNTLASV 200

Query: 285 GEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLEKQSSVEQL 323
           G+P+S ++HL Y+L GLG EYN FVT I  R  +P++ +V +LLL+Y ARLE+Q++    
Sbjct: 201 GDPISSQEHLTYLLNGLGLEYNAFVTPILARPVKPTIEEVHALLLSYEARLERQNAAASP 260

BLAST of Lag0025249 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 9.8e-13
Identity = 42/181 (23.20%), Postives = 84/181 (46.41%), Query Frame = 0

Query: 140 PLNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPKYLD------------------ 199
           P+ + + +SNY  W+   L H ++FD+ G I+G   P    D                  
Sbjct: 21  PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKRDGIVKLSLYGTL 80

Query: 200 AAETQLGEIIGCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKD 259
             +   G  +  ST+ +IW  ++  + ++  AR + L S+L+      + V+ Y  ++K 
Sbjct: 81  TPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKK 140

Query: 260 IVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLE 303
           + D    +  P++ R+ + Y+L GL  +++  +  I++R   PS  D  ++L     RL+
Sbjct: 141 LADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLK 200

BLAST of Lag0025249 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-12
Identity = 50/200 (25.00%), Postives = 95/200 (47.50%), Query Frame = 0

Query: 141 LNIKLSDSNYLLWKNQLLNHIIAFDMEGFINGMPPPPK-----------------YLDAA 200
           + + L+  NY +W+       ++F + G I+G   P                   Y    
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKRWKERDGLVKMWIYGTIT 83

Query: 201 ETQLGEII--GCSTASEIWEHLRVVYESSSTARIMGLRSQLQKISKDGLSVSQYLAQIKD 260
           ++ L  II  GC TA ++W  L  ++  +  AR +   ++L+  + D LSV +Y  ++K 
Sbjct: 84  DSLLDTIIKVGC-TARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKS 143

Query: 261 IVDKFSVIGEPLSYRDHLGYILEGLGTEYNPFVTSIQNRSDRPSLADVRSLLLAYVARLE 320
           + D  + +  P+S R  + ++L GL  +Y+  +  I+++S  PS  + RS+LL   +RL 
Sbjct: 144 LSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESRLS 203

Query: 321 KQSSVEQLNMVQANLANLSF 322
            +S     +    +L+N+ F
Sbjct: 204 NKSKSSLSHTNHPSLSNVLF 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.16.5e-5951.01uncharacterized protein LOC111022315 [Momordica charantia][more]
XP_038887133.11.6e-4467.88uncharacterized protein LOC120077323 [Benincasa hispida][more]
PON47862.19.1e-3743.05hypothetical protein TorRG33x02_321990 [Trema orientale][more]
RVW69807.13.5e-3645.08Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
GFY85402.11.3e-3539.66hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
Match NameE-valueIdentityDescription
Q94HW23.9e-1426.18Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A6J1DQX73.2e-5951.01uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A2P5BGF84.4e-3743.05Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV... [more]
A0A438GC621.7e-3645.08Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A7J0EGI56.4e-3639.66Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A803NL562.8e-3135.57Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G34070.19.8e-1323.20CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
AT5G48050.11.7e-1225.00CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 184..299
e-value: 9.9E-21
score: 74.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..70
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 141..308

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025249.1Lag0025249.1mRNA