Lag0025224 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025224
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 10106389 .. 10107224 (-)
RNA-Seq ExpressionLag0025224
SyntenyLag0025224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGACTGGTCTAGCAGGAGTGCATCCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCTGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCGCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

mRNA sequence

ATGGGGACTGGTCTAGCAGGAGTGCATCCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCTGAGGCGAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

Coding sequence (CDS)

ATGGGGACTGGTCTAGCAGGAGTGCATCCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCTGAGGCGAATCTGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAG

Protein sequence

MGTGLAGVHPVGESGDYPCRLLRSPNKMGTGLAGVHLRRIWLLRSPNKMGTGSSRSASEGESGDYPCRLLRSPNKMGTGLAGVHEGESGDYPCRLLRSPNKMGTGSSRSYSDHPIKWGLGLAGVHEGESGDYPCRLLRSPNKMGTGSSRRHEGESGDYPCRLLRSPNKMGTGSSRSASL
Homology
[Close]
BLAST of Lag0025224 vs. NCBI nr
Match: KAG8744601.1 (hypothetical protein FRC10_009826 [Ceratobasidium sp. 414])

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-04
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 0 

Query: 66   PCRLLRSPNKMGTGLAGVHEGESG--DYPCRLLRSPNKMGTGSSRSYSDHPIKWGLGLAG 125
            P +++  P+K+  G + +  G S   D P  ++  P+++G G SR   + P   G G + 
Sbjct: 1119 PSKIVEGPSKIVDGPSRIVGGPSRIVDGPSMIVGGPSRIGEGPSR-IGEGPSWIGEGPSR 1178

Query: 126  VHEGES--GDYPCRLLRSPNKMGTGSSRRHEGES--GDYPCRLLRSPNKMGTGSSR 176
            + EG S  G+ P R+   P+++G G SR  +G S  GD P R+   P ++G G SR
Sbjct: 1179 IGEGPSRIGEGPSRIGEGPSRIGEGPSRIGDGPSRIGDGPSRIGEGPARIGEGPSR 1233

The following BLAST results are available for this feature:
BLAST of Lag0025224 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8744601.17.4e-0432.76hypothetical protein FRC10_009826 [Ceratobasidium sp. 414][more]
BLAST of Lag0025224 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025224.1Lag0025224.1mRNA