Lag0025216 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025216
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionF-box domain-containing protein
Locationchr10: 9902313 .. 9903810 (-)
RNA-Seq ExpressionLag0025216
SyntenyLag0025216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTTGCATCTCGTCGACATCGATTGCATCTATTGGACTCAACAGACACTTACAGTCGAAGAGTCGTGTCCCATCAGCAAAGGGTAAAATAGGAATTTTTTTAAACAGTAAGGGCAAAAGAGGAAACAAAAGATTCTCCCCTCTTAGTCCCATTTATATATAGTATAGATAATGAAAAAAGAAAACCTTGAAGGGTCATTTTGAAACAAACTTCAAATTTCAAGGGATAAAATGAAACTTTTGAAAGTCCAAGGTAAAATTGAATTCAACCATACGGTTCAAGGGTATTTTTGTTAATTTAACCCTATTTGAATTATCTCATACTTTAATGAATAAATTTGTAATTCAACTGTCAATTATTTTAGTACATGTTTGTGAGTGATTTTGAAATTGTTAAAATCATTTTTGTCATATTCAAAATCACATCAAAACATGCCTTTAACAATTCAAAATTAATTTCGATGATATGAAAATCAAACTTCTTTTCTTCTTTTTTTTTTACAAGAAAATCAAACTTAAAAGCGTAAAATAAAATTGATTTTGAATAATTAAATTAGATGAATTTCAAATAAGATTTTTAACGGCTTCAAAATTACTCAAATTTATACTTGTTAACCAATCCAATCGGTTATTATTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCAATCGGTGGCTTCTATCGGTATCGTGAATTATTTGGCTTTTACGTACAGAATACACGCGTTACTGCCCAATACGTCGAGCCAATTCAACCATTGCTCTGCCAGAGGGAGATCGAGAGCGAGCGAACAGGGATGGCGTAAGGAAATTGGTTGGTTCTCTCAATCTCAGAAGCATTTCACTGGCGATATCGATTCCCTAATTTGTTGTCTGCATGAAATTGTAGAACTTCCCATTTTCGGTAGCGAACTGGATTCGTGCCAATTGTTAACTTTAATCTTAAAACATGCAAGGCGTTTCTTTCCTGATTTGAGAACGATTCGGCGACTTGTTTGCATCGGTTGGTTGGTGAAGGCTCATTATCTTCCTTCCATCCAAAAGGTAATCTAGCTTTTCTGAATTGGATTGTATTGTCATAAATTCATAATTTGTTTAGAGTCTAGACAAGCATCGGTGTTTTGAGAAGGCTAAGTATGGAATGACTTTGTGTCGATAATAAATTCGTTTGATGAATTAAGTAGAGAGAATTCAAGGCATATGCAATTTGCTTACCATATTTTCTTTCAAATCTGAATTCTTCTTCAGAGTTACTCCAAGACTTTTACAGGGCTGGTCCTGTGAGGGCTGGCTTCCATTGTTCAATCACGGCTTTAAGGCAAGAGTCTTGTGTTAAAATTAGAAGGGGCAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGGGCCCTGCCCTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

mRNA sequence

ATGAATAGTTGCATCTCGTCGACATCGATTGCATCTATTGGACTCAACAGACACTTACAGTCGAAGAGTCGTGTCCCATCAGCAAAGGAACTTCCCATTTTCGGTAGCGAACTGGATTCGTGCCAATTGTTAACTTTAATCTTAAAACATGCAAGGCGTTTCTTTCCTGATTTGAGAACGATTCGGCGACTTGTTTGCATCGGTTGGTTGGTGAAGGCTCATTATCTTCCTTCCATCCAAAAGAGAGAATTCAAGGCATATGCAATTTGCTTACCATATTTTCTTTCAAATCTGAATTCTTCTTCAGAGTTACTCCAAGACTTTTACAGGGCTGGTCCTGTGAGGGCTGGCTTCCATTGTTCAATCACGGCTTTAAGGCAAGAGTCTTGTGTTAAAATTAGAAGGGGCAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGGGCCCTGCCCTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

Coding sequence (CDS)

ATGAATAGTTGCATCTCGTCGACATCGATTGCATCTATTGGACTCAACAGACACTTACAGTCGAAGAGTCGTGTCCCATCAGCAAAGGAACTTCCCATTTTCGGTAGCGAACTGGATTCGTGCCAATTGTTAACTTTAATCTTAAAACATGCAAGGCGTTTCTTTCCTGATTTGAGAACGATTCGGCGACTTGTTTGCATCGGTTGGTTGGTGAAGGCTCATTATCTTCCTTCCATCCAAAAGAGAGAATTCAAGGCATATGCAATTTGCTTACCATATTTTCTTTCAAATCTGAATTCTTCTTCAGAGTTACTCCAAGACTTTTACAGGGCTGGTCCTGTGAGGGCTGGCTTCCATTGTTCAATCACGGCTTTAAGGCAAGAGTCTTGTGTTAAAATTAGAAGGGGCAAAGAATACATGCAAGCTTTCCCTAAGTTCTTGATTGCATCCCCTTCATTTCACGGTGGGCGTGGGGCCCTGCCCTCAGCTGGTGGGCACCCAGCAGATCTTACCTTCCTTGCTGGTGGTGGTTACTAA

Protein sequence

MNSCISSTSIASIGLNRHLQSKSRVPSAKELPIFGSELDSCQLLTLILKHARRFFPDLRTIRRLVCIGWLVKAHYLPSIQKREFKAYAICLPYFLSNLNSSSELLQDFYRAGPVRAGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAGGGY
Homology
[Close]
BLAST of Lag0025216 vs. NCBI nr
Match: KAG7019470.1 (hypothetical protein SDJN02_18431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 116 AGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAG 175
           AGFHCSITALRQESCVKIRR KEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAG
Sbjct: 26  AGFHCSITALRQESCVKIRRNKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADLTFLAG 85

Query: 176 GGY 179
           GGY
Sbjct: 86  GGY 88

[Close]
BLAST of Lag0025216 vs. NCBI nr
Match: OMO73789.1 (hypothetical protein COLO4_26862 [Corchorus olitorius])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 111 AGPVRAGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADL 170
           AGPVRAGF  S TALR+E C KIRRGKE M AFPKFLIASPSFHGGRGALPSAGGHPADL
Sbjct: 88  AGPVRAGFANSKTALRREICAKIRRGKECMPAFPKFLIASPSFHGGRGALPSAGGHPADL 147

Query: 171 TFLAGG 177
           TFLAGG
Sbjct: 148 TFLAGG 153

[Close]
BLAST of Lag0025216 vs. NCBI nr
Match: OMP06232.1 (hypothetical protein CCACVL1_01663 [Corchorus capsularis])

HSP 1 Score: 115.5 bits (288), Expect = 4.6e-22
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 111 AGPVRAGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADL 170
           AGPVRAGF  S TALR+E C KIRRGKE M AFPKFLIASPSFHGGRGALPSAGGHPADL
Sbjct: 465 AGPVRAGFANSKTALRREICAKIRRGKECMPAFPKFLIASPSFHGGRGALPSAGGHPADL 524

Query: 171 TFLAG 176
           TFLAG
Sbjct: 525 TFLAG 529

[Close]
BLAST of Lag0025216 vs. NCBI nr
Match: MBA0622908.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 111 AGPVRAGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADL 170
           AGP  AGF    TALR+E C KIRRGKE MQAFPKFLIASPSFHGGRGALPSAGGHPADL
Sbjct: 17  AGPSWAGFVHLTTALRREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADL 76

Query: 171 TFLAGGG 178
           T+LAGGG
Sbjct: 77  TYLAGGG 83

[Close]
BLAST of Lag0025216 vs. NCBI nr
Match: KAG4145722.1 (hypothetical protein ERO13_D05G111500v2 [Gossypium hirsutum])

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 111 AGPVRAGFHCSITALRQESCVKIRRGKEYMQAFPKFLIASPSFHGGRGALPSAGGHPADL 170
           AGP  AGF    TALR+E C KIRRGKE MQAFPKFLIASPSFHGGRGALPSAGGHPADL
Sbjct: 20  AGPSWAGFVHLTTALRREPCEKIRRGKECMQAFPKFLIASPSFHGGRGALPSAGGHPADL 79

Query: 171 TFLAGGG 178
           T+LAGGG
Sbjct: 80  TYLAGGG 86

The following BLAST results are available for this feature:
BLAST of Lag0025216 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019470.16.2e-2798.41hypothetical protein SDJN02_18431, partial [Cucurbita argyrosperma subsp. argyro... [more]
OMO73789.11.2e-2287.88hypothetical protein COLO4_26862 [Corchorus olitorius][more]
OMP06232.14.6e-2287.69hypothetical protein CCACVL1_01663 [Corchorus capsularis][more]
MBA0622908.13.9e-2183.58hypothetical protein [Gossypium davidsonii][more]
KAG4145722.13.9e-2183.58hypothetical protein ERO13_D05G111500v2 [Gossypium hirsutum][more]
BLAST of Lag0025216 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025216.1Lag0025216.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016779 nucleotidyltransferase activity