Lag0025164 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025164
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 9255478 .. 9255930 (+)
RNA-Seq Expression	Lag0025164
Synteny	Lag0025164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTTCCAAGAACACATCCGCAACCCAGAAGAATCCGGCTCTTGCTCCCTCTCCTCCTTAGTTTTCACTCCACAAGTACTACAATATTCCTCTCCCCAAACTAAAGCGCCATTGCAATTCGAAGCTAAACGTGCTGCAAATTATACAGTACCAGAAACTTGGTGCCCACTCTAGAATCCTCAACCGAAGCCGGTTTCGCAACAGAATACAGTGGTTTTGAACCTCATCCGAAGCTTCAAATCAGCTCCAACACTCCCCCCAAGATTACACCAATCTCTAATTCAAATTACAAACAAACCCAGATTAAGCTTCACAAAACCCAACTCCTCCTCCTCCTCCAGGCCCGCGGACTACAGATTCTGAAAGAGCTCTCAAACAGAGCCTACAAAGCTAAAGATCCAGAAACGCCTGGGAGCCACCAGATCTTCAGGGAAGAACATGAAAGCTAG

mRNA sequence

ATGCGGTTTCCAAGAACACATCCGCAACCCAGAAGAATCCGGCTCTTGCTCCCTCTCCTCCTTAGTTTTCACTCCACAAAATCCTCAACCGAAGCCGGTTTCGCAACAGAATACAGTGGTTTTGAACCTCATCCGAAGCTTCAAATCAGCTCCAACACTCCCCCCAAGATTACACCAATCTCTAATTCAAATTACAAACAAACCCAGATTAAGCTTCACAAAACCCAACTCCTCCTCCTCCTCCAGGCCCGCGGACTACAGATTCTGAAAGAGCTCTCAAACAGAGCCTACAAAGCTAAAGATCCAGAAACGCCTGGGAGCCACCAGATCTTCAGGGAAGAACATGAAAGCTAG

Coding sequence (CDS)

ATGCGGTTTCCAAGAACACATCCGCAACCCAGAAGAATCCGGCTCTTGCTCCCTCTCCTCCTTAGTTTTCACTCCACAAAATCCTCAACCGAAGCCGGTTTCGCAACAGAATACAGTGGTTTTGAACCTCATCCGAAGCTTCAAATCAGCTCCAACACTCCCCCCAAGATTACACCAATCTCTAATTCAAATTACAAACAAACCCAGATTAAGCTTCACAAAACCCAACTCCTCCTCCTCCTCCAGGCCCGCGGACTACAGATTCTGAAAGAGCTCTCAAACAGAGCCTACAAAGCTAAAGATCCAGAAACGCCTGGGAGCCACCAGATCTTCAGGGAAGAACATGAAAGCTAG

Protein sequence

MRFPRTHPQPRRIRLLLPLLLSFHSTKSSTEAGFATEYSGFEPHPKLQISSNTPPKITPISNSNYKQTQIKLHKTQLLLLLQARGLQILKELSNRAYKAKDPETPGSHQIFREEHES

Homology

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BLAST of Lag0025164 vs. NCBI nr
Match: KAG6583870.1 (hypothetical protein SDJN03_19802, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 27 KSSTEAGFATEYSGFEPHPKLQISSNTPPKITPISNSNYKQTQIKLHKTQ 77
          +SSTEAGFAT+ SGF PHPKLQIS+N  PKI+PI N   ++   +L  T+
Sbjct: 16 ESSTEAGFATKQSGFGPHPKLQISANASPKISPIFNLQLEEKPSRLRFTK 65

The following BLAST results are available for this feature:

BLAST of Lag0025164 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583870.1	3.3e-05	58.00	hypothetical protein SDJN03_19802, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0025164 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025164.1	Lag0025164.1	mRNA