Lag0025132 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025132
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTify domain-containing protein
Locationchr10: 8919299 .. 8919797 (+)
RNA-Seq ExpressionLag0025132
SyntenyLag0025132
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAATTGCAACTTGGAGCTTCGTCTTTCTCCTTCTATGTCTTTCTCCGGCCATGATTCCGGCGACCACCGCCACCACCACCCTCGCCTCCACCAGTTCCTCGGCAGGGCTGATGAATCGAGCAAAAATTCCCAGCAGCAGATGACCATTTTCTACAACGGGAGAGTTTGTGTTGCGGAGTTTACAGAGGATCAGGTACTTTTCTTCTTCTTCTTCAAGTTCTTCATTTTTGTTCTCTTTTTGGGATTGAATTGGATTTGTTATTAATGAACTTGTTGGTGCATTTCAGGCTAGAGCTATAATAATGCTTGCAACCAGACAGATGGAGGAGCGATTGGCGAGTCGTCGACAGCAATCAGAACCACCGTCGTCGCCGGAGCAGTGTGGCCGTGAAGCTGGTTCTGGTTCTGGGTTGTCCATGAAGAGATCTCTGCAGAGATTTTTGCAGAAAAGGAAGAATAGGATTCAGTCTGCTTCACCATACAATCAATAA

mRNA sequence

ATGGAGAAAAATTGCAACTTGGAGCTTCGTCTTTCTCCTTCTATGTCTTTCTCCGGCCATGATTCCGGCGACCACCGCCACCACCACCCTCGCCTCCACCAGTTCCTCGGCAGGGCTGATGAATCGAGCAAAAATTCCCAGCAGCAGATGACCATTTTCTACAACGGGAGAGTTTGTGTTGCGGAGTTTACAGAGGATCAGGCTAGAGCTATAATAATGCTTGCAACCAGACAGATGGAGGAGCGATTGGCGAGTCGTCGACAGCAATCAGAACCACCGTCGTCGCCGGAGCAGTGTGGCCGTGAAGCTGGTTCTGGTTCTGGGTTGTCCATGAAGAGATCTCTGCAGAGATTTTTGCAGAAAAGGAAGAATAGGATTCAGTCTGCTTCACCATACAATCAATAA

Coding sequence (CDS)

ATGGAGAAAAATTGCAACTTGGAGCTTCGTCTTTCTCCTTCTATGTCTTTCTCCGGCCATGATTCCGGCGACCACCGCCACCACCACCCTCGCCTCCACCAGTTCCTCGGCAGGGCTGATGAATCGAGCAAAAATTCCCAGCAGCAGATGACCATTTTCTACAACGGGAGAGTTTGTGTTGCGGAGTTTACAGAGGATCAGGCTAGAGCTATAATAATGCTTGCAACCAGACAGATGGAGGAGCGATTGGCGAGTCGTCGACAGCAATCAGAACCACCGTCGTCGCCGGAGCAGTGTGGCCGTGAAGCTGGTTCTGGTTCTGGGTTGTCCATGAAGAGATCTCTGCAGAGATTTTTGCAGAAAAGGAAGAATAGGATTCAGTCTGCTTCACCATACAATCAATAA

Protein sequence

MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCVAEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFLQKRKNRIQSASPYNQ
Homology
BLAST of Lag0025132 vs. NCBI nr
Match: XP_022927242.1 (protein TIFY 5A-like [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 109/133 (81.95%), Postives = 116/133 (87.22%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           ME+NCNLELRLSPS SFS  DSGDHRHH PRLHQFL   DESSKNSQQQMTIFYNGRVCV
Sbjct: 8   MEQNCNLELRLSPSTSFSDQDSGDHRHHQPRLHQFLD--DESSKNSQQQMTIFYNGRVCV 67

Query: 61  AEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFLQ 120
           A+FTEDQARAIIMLATR +EER  +RR++ E   SPEQC  E GSGSGLSMKRSLQRFLQ
Sbjct: 68  ADFTEDQARAIIMLATRHVEERSINRRRKLERSMSPEQCNGEGGSGSGLSMKRSLQRFLQ 127

Query: 121 KRKNRIQSASPYN 134
           KRKNR+QSASPYN
Sbjct: 128 KRKNRVQSASPYN 138

BLAST of Lag0025132 vs. NCBI nr
Match: KAG6583892.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019510.1 Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 7.3e-49
Identity = 108/133 (81.20%), Postives = 115/133 (86.47%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           ME+NCNLELRLSPS SFS  DSGDHRHH PRLHQFL   DESSKNSQQQMTIFYNGRVCV
Sbjct: 8   MEQNCNLELRLSPSTSFSDQDSGDHRHHQPRLHQFLD--DESSKNSQQQMTIFYNGRVCV 67

Query: 61  AEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFLQ 120
           A+FTEDQARAII LATR +EER  +RR++ E   SPEQC  E GSGSGLSMKRSLQRFLQ
Sbjct: 68  ADFTEDQARAIITLATRHVEERSINRRRKLERSMSPEQCNGEGGSGSGLSMKRSLQRFLQ 127

Query: 121 KRKNRIQSASPYN 134
           KRKNR+QSASPYN
Sbjct: 128 KRKNRVQSASPYN 138

BLAST of Lag0025132 vs. NCBI nr
Match: XP_023520178.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 3.6e-48
Identity = 106/133 (79.70%), Postives = 115/133 (86.47%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           ME++CNLELRLSPS SFS  DSGDHRHH PRLHQFL   DESSKNSQQQMTIFYNGRVCV
Sbjct: 8   MEQSCNLELRLSPSTSFSDQDSGDHRHHQPRLHQFLD--DESSKNSQQQMTIFYNGRVCV 67

Query: 61  AEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFLQ 120
            +FTEDQARAIIMLATR +EER  +RR++ E   SPE+C  E GSGSGLSMKRSLQRFLQ
Sbjct: 68  GDFTEDQARAIIMLATRHVEERSVNRRRKLERSMSPERCNGEGGSGSGLSMKRSLQRFLQ 127

Query: 121 KRKNRIQSASPYN 134
           KRKNR+QSASPYN
Sbjct: 128 KRKNRVQSASPYN 138

BLAST of Lag0025132 vs. NCBI nr
Match: XP_023001485.1 (protein TIFY 5A-like [Cucurbita maxima])

HSP 1 Score: 197.2 bits (500), Expect = 9.0e-47
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           ME+NCNLELRLSPS SFS  DSGD R H PRLHQFL   DESSKNSQQQMTIFYNGRVCV
Sbjct: 8   MEQNCNLELRLSPSTSFSDQDSGDRRRHQPRLHQFLD--DESSKNSQQQMTIFYNGRVCV 67

Query: 61  AEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFLQ 120
           A+FTEDQARAIIMLATR +EER  +R ++ E   SPEQC  E GSGSGLSMKRSLQRFLQ
Sbjct: 68  ADFTEDQARAIIMLATRHVEERSINRCRKLERSMSPEQCNGEGGSGSGLSMKRSLQRFLQ 127

Query: 121 KRKNRIQSASPYN 134
           KRKNR+QSASPYN
Sbjct: 128 KRKNRVQSASPYN 138

BLAST of Lag0025132 vs. NCBI nr
Match: XP_038896063.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 7.4e-41
Identity = 102/138 (73.91%), Postives = 114/138 (82.61%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMS--FSGHDSGDHR-HHHPRLHQFLGRADESSKNSQQQMTIFYNGR 60
           ME+NCNLELRLSPS S  +  + S DHR HHHP LHQFL   DE +KNSQQQMTIFYNGR
Sbjct: 8   MEQNCNLELRLSPSSSTFYPHNHSDDHRHHHHPHLHQFLD--DEFNKNSQQQMTIFYNGR 67

Query: 61  VCVAEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREA--GSGSGLSMKRSL 120
           VCVA+FTEDQA+AIIMLATR +EER  + +Q+ E  +SPEQC  EA  GSGSGLSMKRSL
Sbjct: 68  VCVADFTEDQAKAIIMLATRHVEERSKNPQQKLERSTSPEQCNVEAVSGSGSGLSMKRSL 127

Query: 121 QRFLQKRKNRIQSASPYN 134
           QRFLQKRKNRIQSASPY+
Sbjct: 128 QRFLQKRKNRIQSASPYH 143

BLAST of Lag0025132 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-12
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           +++NC+LELRL P+   S  DS D       + +     +       Q++TIFYNG++C 
Sbjct: 3   LQQNCDLELRLFPTSYDS--DSSD----TTSVVESTSSGNPQPNEESQRITIFYNGKMCF 62

Query: 61  -AEFTEDQARAIIMLATRQMEERLASRRQQSEPPSSPEQCGREAGSGSGLSMKRSLQRFL 120
            ++ T  QAR+II +A+R+M+ + +S    S+PP+               SMK+SLQ FL
Sbjct: 63  SSDVTHLQARSIISIASREMKTKSSS--NGSDPPNKSTSFHHNQLPNPKASMKKSLQSFL 122

Query: 121 QKRKNRIQSASPYN 134
           QKRK RIQ+ SPY+
Sbjct: 123 QKRKIRIQATSPYH 128

BLAST of Lag0025132 vs. ExPASy Swiss-Prot
Match: O64687 (Protein TIFY 5B OS=Arabidopsis thaliana OX=3702 GN=TIFY 5B PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.2e-11
Identity = 55/137 (40.15%), Postives = 74/137 (54.01%), Query Frame = 0

Query: 1   MEKNCNLELRLSPSMSFSGHDSGDHRHHHPRLHQFLGRADESSKNSQQQMTIFYNGRVCV 60
           M+  C+LELRL      S +DS      H  L +         K   Q +TIFYNG +CV
Sbjct: 20  MQTKCDLELRLLT----SSYDS----DFHSSLDESSSSEISQPKQESQILTIFYNGHMCV 79

Query: 61  -AEFTEDQARAIIMLATRQMEERLASRRQQ--SEPPSSPEQCGREAGSGSGLSMKRSLQR 120
            ++ T  +A AI+ LA+R +EE+  S R    S+PP+ P    R     +  SMKRSL  
Sbjct: 80  SSDLTHLEANAILSLASRDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKA--SMKRSLHS 139

Query: 121 FLQKRKNRIQSASPYNQ 135
           FLQKR  RIQ+ SPY++
Sbjct: 140 FLQKRSLRIQATSPYHR 146

BLAST of Lag0025132 vs. ExPASy Swiss-Prot
Match: Q93ZM9 (Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.7e-04
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0

Query: 32  LHQFLGRADESSKNSQQQMTIFYNGRVCVAEFTEDQARAIIMLATRQMEERLASRRQQSE 91
           +H  L R+     +    MTIFYNG V V + + ++A  I+ +A        AS++ +S 
Sbjct: 87  VHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVA-----NEAASKKDESS 146

Query: 92  PPSS----------PEQCGREAGSGSGLSMKRSLQRFLQKRKNRIQSASPY 133
             +           P+  G+       ++ ++SLQRFL+KRK R+ S SPY
Sbjct: 147 METDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKERLVSTSPY 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927242.11.5e-4981.95protein TIFY 5A-like [Cucurbita moschata][more]
KAG6583892.17.3e-4981.20Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019510.1 P... [more]
XP_023520178.13.6e-4879.70protein TIFY 5A-like [Cucurbita pepo subsp. pepo][more]
XP_023001485.19.0e-4779.70protein TIFY 5A-like [Cucurbita maxima][more]
XP_038896063.17.4e-4173.91protein TIFY 5A-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q8LBM25.7e-1238.06Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1[more]
O646878.2e-1140.15Protein TIFY 5B OS=Arabidopsis thaliana OX=3702 GN=TIFY 5B PE=1 SV=1[more]
Q93ZM95.7e-0430.63Protein TIFY 9 OS=Arabidopsis thaliana OX=3702 GN=TIFY9 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010399Tify domainSMARTSM00979tify_2coord: 43..77
e-value: 8.3E-8
score: 41.9
IPR010399Tify domainPFAMPF06200tifycoord: 46..75
e-value: 2.3E-14
score: 52.4
IPR010399Tify domainPROSITEPS51320TIFYcoord: 43..77
score: 12.072989
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425Jas_motifcoord: 112..132
e-value: 4.0E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..134
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5Bcoord: 1..133
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025132.1Lag0025132.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048583 regulation of response to stimulus