Lag0025128 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025128
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H-like superfamily protein
Locationchr10: 8875075 .. 8875407 (+)
RNA-Seq ExpressionLag0025128
SyntenyLag0025128
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCTACTTTTTTTCTTTACAGATCCATGGATTCCAAAGGAGAGCACTTTCAAACCAATCCCATTAACAGACACGAATTACCAAGAAACTGTTTTAGTTTCTGAGTTTCTTACTCCAACAATGGGATGGGATTTGCATAAGTTGAGCACTGTGGTCATGCAAGAGGATGTAAATATTATTGAGACAATTTCTATTAGCATCTCAAATGCAGAAGATCAATGGATTTGGCATTACTGCTCGAATGGTTTGTATACTGTTCGCAGTGGATACAAGCTCGCACAAATTTTGTCAATTGATCGGGAATCTACTAGCACCAATGATCAATGA

mRNA sequence

ATGGACAATCTACTTTTTTTCTTTACAGATCCATGGATTCCAAAGGAGAGCACTTTCAAACCAATCCCATTAACAGACACGAATTACCAAGAAACTGTTTTAGTTTCTGAGTTTCTTACTCCAACAATGGGATGGGATTTGCATAAGTTGAGCACTGTGGTCATGCAAGAGGATGTAAATATTATTGAGACAATTTCTATTAGCATCTCAAATGCAGAAGATCAATGGATTTGGCATTACTGCTCGAATGGTTTGTATACTGTTCGCAGTGGATACAAGCTCGCACAAATTTTGTCAATTGATCGGGAATCTACTAGCACCAATGATCAATGA

Coding sequence (CDS)

ATGGACAATCTACTTTTTTTCTTTACAGATCCATGGATTCCAAAGGAGAGCACTTTCAAACCAATCCCATTAACAGACACGAATTACCAAGAAACTGTTTTAGTTTCTGAGTTTCTTACTCCAACAATGGGATGGGATTTGCATAAGTTGAGCACTGTGGTCATGCAAGAGGATGTAAATATTATTGAGACAATTTCTATTAGCATCTCAAATGCAGAAGATCAATGGATTTGGCATTACTGCTCGAATGGTTTGTATACTGTTCGCAGTGGATACAAGCTCGCACAAATTTTGTCAATTGATCGGGAATCTACTAGCACCAATGATCAATGA

Protein sequence

MDNLLFFFTDPWIPKESTFKPIPLTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISISISNAEDQWIWHYCSNGLYTVRSGYKLAQILSIDRESTSTNDQ
Homology
BLAST of Lag0025128 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 9.1e-13
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 0

Query: 8    FTDPWIPKESTFKPIPLTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISI 67
            F+DPW+P+ +TFKP+   +     T  V+ F+T    WD+  +S     ED ++I ++ I
Sbjct: 1028 FSDPWLPRPTTFKPLRFNNGALDTT--VASFITADGNWDVTSISHSFCNEDRDLILSMPI 1087

Query: 68   SISNAEDQWIWHYCSNGLYTVRSGYKLAQILSIDRESTSTN 109
            S  N +D W+WHY   G Y+VRSGYKL   L  +  S STN
Sbjct: 1088 SSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTN 1126

BLAST of Lag0025128 vs. NCBI nr
Match: XP_030503504.1 (uncharacterized protein LOC115718825 [Cannabis sativa])

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 9   TDPWIPKESTFKPIPLTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISIS 68
           TDPWIP ++ F P+    T + ++  V++++TP   WD+ +L       DV+ I  I +S
Sbjct: 31  TDPWIPAQNRFTPVRF--TGFADS-CVADYITPNKVWDVTQLHNDFSSIDVDNILKIPLS 90

Query: 69  ISNAEDQWIWHYCSNGLYTVRSGYKLAQILSIDRESTSTNDQ 111
           ++  +D +IWHY   G+YTV+SGY LA  L+   ++T +N Q
Sbjct: 91  LAAQDDNFIWHYTPTGVYTVQSGYHLAYSLATQNQTTGSNSQ 129

BLAST of Lag0025128 vs. NCBI nr
Match: XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 8   FTDPWIPKESTFKPIPLTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISI 67
           + D WIP  ++F+PI  +     +   VS+F+ P   W++  L+    +EDV  I +I +
Sbjct: 56  YGDAWIPSPNSFRPI--SPQVLDQETKVSDFIFPVGNWNVDLLNLCFQEEDVKAITSIPL 115

Query: 68  SISNAEDQWIWHYCSNGLYTVRSGYKL 95
           S++  +D+WIWHY +NG Y+V+SGY+L
Sbjct: 116 SVNFHKDRWIWHYTTNGTYSVKSGYRL 140

BLAST of Lag0025128 vs. NCBI nr
Match: XP_030509336.1 (uncharacterized protein LOC115724021 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 9   TDPWIPKESTFKPIP-LTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISI 68
           +DPWIP+ S F PI  L DT      LVS ++T    W+L  L+      DV+ I +I +
Sbjct: 681 SDPWIPRHSEFTPICFLGDTQN----LVSYYITDDKEWNLPLLARDFSAVDVDYILSIPL 740

Query: 69  SISNAEDQWIWHYCSNGLYTVRSGYKLAQILSIDRESTSTNDQ 111
           S S+  DQWIWH+ ++  YTV+SGY LA  L     S S+N+Q
Sbjct: 741 SSSSVSDQWIWHFTNSNEYTVQSGYHLANDLEDSDLSNSSNNQ 779

BLAST of Lag0025128 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 73.9 bits (180), Expect = 9.4e-10
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 10   DPWIPKESTFKPIPLTDTNYQETVLVSEFLTPTMGWDLHKLSTVVMQEDVNIIETISISI 69
            D WIP    FKP+  T +    + LV++++T T  WDL  L       D++ I TI +S 
Sbjct: 951  DSWIPGNEYFKPLRFTGSC---SNLVADYITDTREWDLELLHNDFSPADIDRILTIPLSY 1010

Query: 70   SNAEDQWIWHYCSNGLYTVRSGYKLAQILSIDRESTSTNDQ 111
            ++  D+W WHY S+G YTV+SGY LA  L     S+S+  Q
Sbjct: 1011 NSTRDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTSQ 1048

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.19.1e-1340.59uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030503504.16.5e-1137.25uncharacterized protein LOC115718825 [Cannabis sativa][more]
XP_021801569.13.2e-1037.93uncharacterized protein LOC110745747 isoform X1 [Prunus avium][more]
XP_030509336.14.2e-1042.72uncharacterized protein LOC115724021 [Cannabis sativa][more]
XP_030497600.19.4e-1039.60uncharacterized protein LOC115713257 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025128.1Lag0025128.1mRNA