Lag0025071 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025071
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr10: 8295511 .. 8295930 (-)
RNA-Seq ExpressionLag0025071
SyntenyLag0025071
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGCACAATCTGCCTCCAACAACGGGAACCCATTGATTCTGTTTGCAGTTTTCAGCTTGAAGAGGAATTCACTAAGAAAAAGAAAGAAGTTTGGAGGGTTGTTAATGATCTTGCTTTAATAAATCTCGTCTCAGCTTGGTGGAATGTTGATACCCAAGGCAAATTGGAAGGATTTCGCTTCGTGAGAAAGCTTAGAAACCTTAGGAGCATCCTGAAGGAGTGGAACAAAGAGATCTTTGGAGATATTAAGATTAAGAAACAAAAGATCATGGATAGAATCAAATCCATTGATGACCTCGAAGAGGTGGACCAGTTATCCCCTGCCTTGAAAGATGAGCGTCTATCTCTCAAAGCTAAGCTTGTAGAGATAATTCGCAAGGAGACCATTAGCTCGAGCCTGGAGGCAAAAAGCTAA

mRNA sequence

ATGGCCAGCACAATCTGCCTCCAACAACGGGAACCCATTGATTCTGTTTGCAGTTTTCAGCTTGAAGAGGAATTCACTAAGAAAAAGAAAGAAGTTTGGAGGGTTGTTAATGATCTTGCTTTAATAAATCTCGTCTCAGCTTGGTGGAATGTTGATACCCAAGGCAAATTGGAAGGATTTCGCTTCGTGAGAAAGCTTAGAAACCTTAGGAGCATCCTGAAGGAGTGGAACAAAGAGATCTTTGGAGATATTAAGATTAAGAAACAAAAGATCATGGATAGAATCAAATCCATTGATGACCTCGAAGAGGTGGACCAGTTATCCCCTGCCTTGAAAGATGAGCGTCTATCTCTCAAAGCTAAGCTTGTAGAGATAATTCGCAAGGAGACCATTAGCTCGAGCCTGGAGGCAAAAAGCTAA

Coding sequence (CDS)

ATGGCCAGCACAATCTGCCTCCAACAACGGGAACCCATTGATTCTGTTTGCAGTTTTCAGCTTGAAGAGGAATTCACTAAGAAAAAGAAAGAAGTTTGGAGGGTTGTTAATGATCTTGCTTTAATAAATCTCGTCTCAGCTTGGTGGAATGTTGATACCCAAGGCAAATTGGAAGGATTTCGCTTCGTGAGAAAGCTTAGAAACCTTAGGAGCATCCTGAAGGAGTGGAACAAAGAGATCTTTGGAGATATTAAGATTAAGAAACAAAAGATCATGGATAGAATCAAATCCATTGATGACCTCGAAGAGGTGGACCAGTTATCCCCTGCCTTGAAAGATGAGCGTCTATCTCTCAAAGCTAAGCTTGTAGAGATAATTCGCAAGGAGACCATTAGCTCGAGCCTGGAGGCAAAAAGCTAA

Protein sequence

MASTICLQQREPIDSVCSFQLEEEFTKKKKEVWRVVNDLALINLVSAWWNVDTQGKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKKQKIMDRIKSIDDLEEVDQLSPALKDERLSLKAKLVEIIRKETISSSLEAKS
Homology
BLAST of Lag0025071 vs. NCBI nr
Match: TYK03178.1 (hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.3e-11
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 55  GKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKKQKIMDRIKSIDDLEEVDQLSPALKDE 114
           G+ +G+RF+ KLR L + L+ WN+++FGDI+IKK++++ RI  ID LE    L  ALK+E
Sbjct: 401 GRWQGYRFMDKLRALNAQLRWWNRDVFGDIQIKKKEVVARIHEIDALELEGPLDSALKEE 460

Query: 115 RLSLKAKLVEIIRKETISSSLEAK 139
           R+S K  L E+IRKE +S S ++K
Sbjct: 461 RVSSKGDLAEMIRKENVSWSQKSK 484

BLAST of Lag0025071 vs. NCBI nr
Match: KAA0057384.1 (hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK30082.1 hypothetical protein E5676_scaffold216G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 46  SAWWNVDTQGKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKKQKIMDRIKSIDDLEEVD 105
           S+WW++  QG+  G+ F+ KLR L+  L+ WN E+FGDI++K ++I+ RI+ ID  E   
Sbjct: 13  SSWWSMSVQGRWNGYHFMEKLRALKIKLRVWNNEVFGDIQVKMKEIIKRIEKIDAFELDV 72

Query: 106 QLSPALKDERLSLKAKLVEIIRKETISSSLEAK 139
               +LK ER  LK    E+I+ E IS + +AK
Sbjct: 73  PSDGSLKGERDCLKEDFTEVIKNENISWNKKAK 105

BLAST of Lag0025071 vs. NCBI nr
Match: PON49927.1 (hypothetical protein TorRG33x02_315920, partial [Trema orientale])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 35/91 (38.46%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 48  WWNVDTQGKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKKQKIMDRIKSIDDLEEVDQL 107
           WWN  T    EG++F+ KLR ++  LK+WN ++FGD+++ KQ ++ RI  +D +E   + 
Sbjct: 12  WWNETTTTGWEGYKFLNKLRLVKDKLKKWNMKVFGDMRMVKQSLLTRIGELDTVEGSRRW 71

Query: 108 SPALKDERLSLKAKLVEIIRKETISSSLEAK 139
           +  LK ER+S+K +L E++ KE  S  + +K
Sbjct: 72  NDQLKQERVSIKNRLEEVLFKEERSLQMNSK 102

BLAST of Lag0025071 vs. NCBI nr
Match: XP_010253034.1 (PREDICTED: uncharacterized protein LOC104594458 [Nelumbo nucifera])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0

Query: 30  KEVWRVVNDLALINLVSAWWNVDTQ-GKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKK 89
           +++W  V   + +  V  WW  DT   + EG RF RKL+NL+  LKEWN   FG I+ +K
Sbjct: 89  EDMWLTVP--SFVQKVRNWWEEDTSVARWEGIRFHRKLKNLKGKLKEWNSNQFGRIEERK 148

Query: 90  QKIMDRIKSIDDLEEVDQLSPALKDERLSLKAKLVEIIRKETIS 133
             ++ RI+ ID  EE  Q+    K ER +LK +L   + +E IS
Sbjct: 149 STLISRIEEIDRREEEGQMGMEEK-ERTNLKKELEATLLREEIS 189

BLAST of Lag0025071 vs. NCBI nr
Match: XP_028121753.1 (uncharacterized protein LOC114318966 [Camellia sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 48  WWNVDTQGKLEGFRFVRKLRNLRSILKEWNKEIFGDIKIKKQKIMDRIKSIDDLEEVDQL 107
           WW        EGF+F+RKLR ++  LK W +E+FGDI   K  ++  I+ +D  E  + L
Sbjct: 57  WWENGRVHGWEGFKFMRKLRGVKDNLKVWKREVFGDIGAVKAGLIRDIEELDVKEAGEGL 116

Query: 108 SPALKDERLSLKAKLVEIIRKETISSSLEAK 139
           S AL+D R  LK KL EI+ +E I     AK
Sbjct: 117 SGALRDRRSMLKVKLEEIVFREQILWGQRAK 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03178.16.3e-1148.81hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa][more]
KAA0057384.12.4e-1041.94hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa] >TYK300... [more]
PON49927.13.5e-0938.46hypothetical protein TorRG33x02_315920, partial [Trema orientale][more]
XP_010253034.12.5e-0739.42PREDICTED: uncharacterized protein LOC104594458 [Nelumbo nucifera][more]
XP_028121753.14.2e-0741.76uncharacterized protein LOC114318966 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025071.1Lag0025071.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050789 regulation of biological process