Lag0025063 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025063
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	blue copper protein-like
Location	chr10: 8221305 .. 8223410 (+)
RNA-Seq Expression	Lag0025063
Synteny	Lag0025063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTTAGTCCTCCAGGTTTGCAAAACTATTCTAAATGGTCCCTGACTTAACTTTAACTTAACGGAATGCTGACTAGACCGTTATGTGTTGATGTGGATATAGTGACAAGGCTATTTTATTTGCCTACTTGGAAAATAAATTAAAAAGAAACTAACCTATTAAAAAAATGTTAAAATAACTTGCTTTTGTTGATAAGATAGTGGGGGCAAAACTATTTTTTGTTTCTTAAAATGGTAAAATTTCCCAACAAGTGCATTTAGAATTTCCCAACAGAGATACGACGTGGCAAAGGTAACGAAGGACAATTTCGCAAGCAACAATCCGCCGGTCAGAATCTCTCTCTCCGAATCCGGTGAACATTTTCTTCATCTGCACATTCGCCGGCCACTGCAGCACCGGTCAGAAGCTCGCTGTCAACGTCACCGGCGGCGGCGCCAATACACTTCCACCTTCATCTGACACCGTCCCTTCAACTCAGTCTCCGACCACCGCTCCGTCGCTCCAGTAAATAATTTAACATTTTTTTTATTAGGTTAGTTTCTTTTTATTAGTTTTTTAATTTAATTTATTTGCCAAGTAGGCACATAAAATAGTCTTGTCATCACATCCACGTCAGCACATAACAGTCCAATCAGCATTCCGTTAAGTTAAAGTTAAGTTGGAGACCATTTAGAATGGTTTTGCAAACCTGGGGGACTAAAGTGTATCTTTTGAAACTTCAGGGACCAAATAGACATCAATTTCAAACCTCGAGGACTAAAGGTGCATTTTGCCCAAAAAATAATGTAGTGTTCGTCAATGTGTACATTTTCTTCTAAAAATATATTATACCATATTTGATAACGGTTTTTTTCTTTTATTTTGAAAATTATACTTGTTTTTCTTCTGATTTCTTTATCATGGTTTTCATATTTGTCAATGATACACTTGAATACTTAGGAGAGTTTAAAAAATAAAAACACGTTTTTGAAAACTAATTTTTTACTTAAAAAAAATTAATTGGTTTTTTAAAACATATGAATAAGATAGTAAAGGAAAAAAAAATTATAGGTGAAAATAATGTTTATAAGCTTAATTTTAAAAAAACAAAAAACAAAAAAATCAAATGGTTATCAAACGGATTTTTAAAGATACATTTATGAGGATAAAGTTGTCGTATGAAAAAATTGAGTATAGTACTACATATGTACTCTGATTTTTTTCCCAAATTCTGGTCCTTGGTTTCATCATTAGCTTCAATTCGAAGTTTTTTCTTACTTCATTTCATTTATTGTTTTTCATGTCACAATTATGTGAGGTCCACTATTTATAAAAAAAAATGAGGTCCACCAACATTAGAAAAATACTTGTAAAGACAAAATTATAACGTGAACAAAGAGAGTATGGTACTTTTGTAGTACCATAAACTTTACCCTCCTAAAGATACCACGACTTCTGAGAATTATGCATTGATGATTAAATTTTAAGACTCAATCAATATAAAGAAAGTTTATGACTATTTTCAAAAAAAAAAAAAAAAAGAAAGAAAGTTTATGACTAAAAATTCCATTATTTTTTGAAAAAGAGAAAAAATATATTAAATTAGTTAGCGCTTCTAATAGAATTTCATTTTTTTGATAATACCAAAGAGTGAGAGTTCGAGTATAAGATTTATGTTAGTCAAGCTAGGCTCAAGTTGACATCAGGGTATATAAAGATAAGAAATTTTTAATGGATTTTCAAATTTCTAGAAAAAAGATAAAAAAAAAAAAGAAAAAGAAAAAGAAAGAAAGGGTTTTGAATTAAAGAGGCAATTATTGTGGCAAAAAAAGAAAACTTTGAAGATGAGGATTGTTTAAATTATTTATTATTTTTTGATAAAAGTGATTGAAAAGTGTTAATTTAATTTAACGTCTGGCAGTTTTTATTTTTATAGTGACAAAAGTGGAAATGAAAAAGGCAAAGTCCGACGGCGACGATTGAAGCCTCGCCGCTCACCAGCTCATGCTTCTCCATGGATAACGCTGGCGGCTCCGGTTAGGAGTGGCGGAGCTTCGATGCACAGCCACAGAAGTATACTATCCACTCTGAAGTCTCTACAGCGGCGAAGTCCTCCATCGTAG

mRNA sequence

ATGCACTTTAGTCCTCCAGCAACAATCCGCCGGTCAGAATCTCTCTCTCCGAATCCGGTGAACATTTTCTTCATCTGCACATTCGCCGGCCACTGCAGCACCGGTCAGAAGCTCGCTGTCAACGTCACCGGCGGCGGCGCCAATACACTTCCACCTTCATCTGACACCGTCCCTTCAACTCAGTCTCCGACCACCGCTCCGTCGCTCCATGACAAAAGTGGAAATGAAAAAGGCAAAGTCCGACGGCGACGATTGAAGCCTCGCCGCTCACCAGCTCATGCTTCTCCATGGATAACGCTGGCGGCTCCGGTTAGGAGTGGCGGAGCTTCGATGCACAGCCACAGAAGTATACTATCCACTCTGAAGTCTCTACAGCGGCGAAGTCCTCCATCGTAG

Coding sequence (CDS)

ATGCACTTTAGTCCTCCAGCAACAATCCGCCGGTCAGAATCTCTCTCTCCGAATCCGGTGAACATTTTCTTCATCTGCACATTCGCCGGCCACTGCAGCACCGGTCAGAAGCTCGCTGTCAACGTCACCGGCGGCGGCGCCAATACACTTCCACCTTCATCTGACACCGTCCCTTCAACTCAGTCTCCGACCACCGCTCCGTCGCTCCATGACAAAAGTGGAAATGAAAAAGGCAAAGTCCGACGGCGACGATTGAAGCCTCGCCGCTCACCAGCTCATGCTTCTCCATGGATAACGCTGGCGGCTCCGGTTAGGAGTGGCGGAGCTTCGATGCACAGCCACAGAAGTATACTATCCACTCTGAAGTCTCTACAGCGGCGAAGTCCTCCATCGTAG

Protein sequence

MHFSPPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGANTLPPSSDTVPSTQSPTTAPSLHDKSGNEKGKVRRRRLKPRRSPAHASPWITLAAPVRSGGASMHSHRSILSTLKSLQRRSPPS

Homology

[Close]

BLAST of Lag0025063 vs. NCBI nr
Match: XP_023537796.1 (blue copper protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 42/63 (66.67%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 5   PPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGANTLPPSSDTVPSTQSPT 64
           PP  I  SES        FFICT AGHC+ GQKLAVNVTG  A T PPSSDTVPST SP 
Sbjct: 254 PPVRITLSES-----GEHFFICTVAGHCNIGQKLAVNVTGSDATTPPPSSDTVPSTPSPE 311

Query: 65  TAP 68
           TAP
Sbjct: 314 TAP 311

[Close]

BLAST of Lag0025063 vs. NCBI nr
Match: XP_022965828.1 (blue copper protein-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4   SPPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGANTLPPSSDTVPSTQSP 63
           +PP  I  SE     P   F+ICT AGHC+ GQKLAVNVTG  A T PPSSDTVPST SP
Sbjct: 253 NPPVRITLSE-----PGEHFYICTVAGHCNIGQKLAVNVTGSEATTPPPSSDTVPSTPSP 311

Query: 64  TTAP 68
            TAP
Sbjct: 313 ATAP 311

[Close]

BLAST of Lag0025063 vs. NCBI nr
Match: XP_022937470.1 (blue copper protein-like [Cucurbita moschata])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 41/63 (65.08%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 5   PPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGANTLPPSSDTVPSTQSPT 64
           PP  I  SE     P   FFICT AGHC+ GQKLAVNV G  A T PPSSDTVPST SP 
Sbjct: 284 PPVRITLSE-----PGEHFFICTVAGHCNIGQKLAVNVAGSDATTPPPSSDTVPSTPSPA 341

Query: 65  TAP 68
           TAP
Sbjct: 344 TAP 341

[Close]

BLAST of Lag0025063 vs. NCBI nr
Match: XP_004139412.3 (uclacyanin-3 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-10
Identity = 45/69 (65.22%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 4   SPPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGAN-----TLPPSSDTVP 63
           SPP  I  SE     P   FFICTFAGHCS GQKLA+NVTGG A       LPP SDTVP
Sbjct: 247 SPPVKITLSE-----PGEHFFICTFAGHCSFGQKLAINVTGGTATPPSSIALPP-SDTVP 306

Query: 64  STQSPTTAP 68
           ST SPTTAP
Sbjct: 307 STPSPTTAP 309

[Close]

BLAST of Lag0025063 vs. NCBI nr
Match: XP_008456879.1 (PREDICTED: uclacyanin-3-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-09
Identity = 44/69 (63.77%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 4   SPPATIRRSESLSPNPVNIFFICTFAGHCSTGQKLAVNVTGGGAN-----TLPPSSDTVP 63
           SPP  I  SE     P   FFICTFAGHCS GQKLA+NVT G A       LPP SDTVP
Sbjct: 250 SPPVKITLSE-----PGEHFFICTFAGHCSVGQKLAINVTDGTATPPSSIALPP-SDTVP 309

Query: 64  STQSPTTAP 68
           ST SPTTAP
Sbjct: 310 STPSPTTAP 312

The following BLAST results are available for this feature:

BLAST of Lag0025063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537796.1	2.9e-10	66.67	blue copper protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965828.1	2.9e-10	64.06	blue copper protein-like [Cucurbita maxima]	[more]
XP_022937470.1	3.9e-10	65.08	blue copper protein-like [Cucurbita moschata]	[more]
XP_004139412.3	8.6e-10	65.22	uclacyanin-3 [Cucumis sativus]	[more]
XP_008456879.1	3.3e-09	63.77	PREDICTED: uclacyanin-3-like [Cucumis melo]	[more]

BLAST of Lag0025063 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 8..52 e-value: 2.0E-5 score: 26.6
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 21..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025063.1	Lag0025063.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031224	intrinsic component of membrane