Lag0025028 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0025028
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr10: 7898345 .. 7905192 (-)
RNA-Seq Expression	Lag0025028
Synteny	Lag0025028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGAAATGTCGAGCAATGTCGAGATGTCGACCAAAATGTCGAGATGTCGACGAAATGTCGAGTTTTTTTATTTATAATTTATTTATTTTTAGTTTAATAATTATTTTTAAGCTTCATTTTTTGTATGTCTCCCTTGTCCTAGTGGATGTACGCGCTTGGTAAATACTGCTAGCTGGGTTCGATTATAATTTTATAATTCTCAAATTCTCAATTATAATTTTACATTTCTATTATTTTATTATTTTTATCATCTATAAATACTCTCATTCCATTTCAATTTCTTCACACCACAATTCTCAAATTCTTCCAAAATATTCTTCAATTTCTTTTTTAAATTAGAAGTTCTAGGCTTCTAGCTCTAGTTATCTTCACGTGTTAAGTTAAGTTTAAAGTTTACAATGTTTCTGTACAGTATTAGTTAATTTTTGTTTTATTAATTATATAGTTATCAATTATCATTAGTTAATTTTTCTCAGAAAAAAAATTATCATTAGTCAATTATATAGTTCCTATATACTTCTTATTTGTAACTAAAGTCTCATTTTATAATTCAAATAATTTATATCAATTAGCATAATTTTAATTAATAGGAACATCCTATCGACATGTTAATATAAATATCATAAATAATTTTCATCAACTTCCATATTGCATTTAATATAATTAAGTCACAATTAAATTTGCATTTAATAATTCAAAAATTTTCATCAATTTTCATATTATTTTCAAAATTCTTGCACATATCGACATTTGAATCGAAAATTCTATCTAAATATTATCTTACTTTTTAGATATGATGATAAAAAATGGTCAATTATAGTCTAACTAAGCCACAATTAAAGTTTCATTAACTAATTCAAACAATTTTCATCAATTTTCACGATTTCTGTAAATTTTCCCAAAATGTCTCTCGACATTTCCATCGACATCGACATTTTCATAAAATCTGGACCTCGACATTTCCATCGACATCGACATTTTAAACCTTAGTTATAGGTAACTCTGGATCGATTCGAAAATTAAGGAACTAAACAAGCCAGTGCAAAAAAAATCCAAGAATACCAACTGAATTGCACCTTGGAGGAACAAAGGGTTCAAGGGATTCCAATCCCTTGGTCGAGTCCAACCCGTCGGTTCTCCCGCGAACAATTCCTGGAGTTTCTATCCAGCTCGGTTCGACCTAGTTCATCCCGAATTTGTCCTAGAACGAGGGAAAACACTAAAAACGAGAGAAGATATATAAAATCTTCTTCAACATTGAAAAAGGGATTTGGAACCCTAGCTTCTAGATGCTCTGTTCTACCTCTTGTTTTTCAGTTTTTCTTATCCATCTTTCTCCGGACTAATTTAGGCATCAAGTCGGTGTGACATTTGTACAATTTTTTTTTCTTTCTTCTTCTTTCAGGTCACGTGTTCTCCCCTCAAACAAATTTATGGTTGATGTAACTTGAAGGTCGAGTAAGTTTTTCCTACTCGAATTTTAACAACAACAATAGGGTCAAACCAAAAGAAAAATATAAGGAGGGACAGACTTTACCTACATACTTTTCTATTATAAAATTTTGTACGATTAGAGGATAGTTTTTTTCTTTTATATAAAATTTTTTAATATAAGATGAACCAAGCTGGACAAATTACCCCTCCCTTCTTTTTTCTTCATTCCTTCATTGGAAAACCAACAGTTAGCATAAAAGTGAGCAAGCTTAGTAAATCTCATACAATTCAAAAATTAAAATAATTCAATTATTTATTCACCCAAGTGATTCAATTAAAAAACAAAGTTTAAATAAAGTACACTCTCAATAGAGACCAAATCATTTTATATATAAAAAAAAATGACGCAACAAAATTATAGAAACTAAAAGCATAAATTTAACTTTTCACTTGGCGACCATTTATTTTTAATGTTAATTCAAATACTAGTATTAAGTATATAGGTTGATTATTGTTATTGAATTTTGGTTGGGAAGTTGCCAACCAAGTTCCACATTTCTTCAAGCAGCAATAAATAAAGACCGAAAAGTAAAACAAAGGAAGACAATAACAAAAGACATTAATCAAATTTAATGATACATTTAAACAAAATAGAGTCTTTTTTTTTTTAAAGGTGTTTTTTACTGCCAAAAATTGTTTTCTTTCTGAAGACTTTTGAGTCAAGTGGGAAGTCCGATTCTGCGACGTCGTTTCTAATTTTTTGGGTCTAATTAAAATGGAAACCAAAAGTATTATTGGAAGGTTCTCACAAACTATATATTAATTTTATTTTAAATCATCCACTTTTGTACAAATTCCACCTTATTATTTGTATAAGAGGAGTACTATGAACATGCCTCTTTTCCAAACTTATAACTTCAATTTTTTAAATTGGATCCCAGACGATGCCTGCTTTAGGATACGGTCCCCGGTCACGTTTTGGGTCTTGATTCTCAAGTGGCTGATCTCCTTAATGCCTCTGGTCAGTGGAATGATGAGCTTCTTCGACACCACTTTAGTCCTCGCAAGGTACGATCTATCCTTACTATTCCATTACGACATTTATCGGCTGAGGATAAAATCATATGACATTTTGAGAAATGCGGGATCTACACGGTTAAGAGTGGGTATCAGCTTGGTCAGACGGCCTTGTTTGCCCAAATCCAATCGTTGTCTTCGAATGAGGCGTTGTCCAGTTGGTGGAAGGGGTCTTGGAAGATGGGGATCCCGAACAAAATTAAGGTTTTCCTTTGGACGCTTTGCCTAGAGCTTTCTACTGTTGACAACTTGAGTGTCAGGGGCATTGATGTTCTTAATGTATGTGTGCACTGTGGTTGGCATGGTGAATCATGCATGCATGTGTTTTGGCAGTGCAAGTTTTTTCGTGATTCATTGATGAGATATGAGTGGGAGGTTTTGTTGCATAGTGTCCAGGTGAATTCTATGCTTAATCTGCTAAGGGATGTGAAGGATAAGGTCGACTGGGCTAAGTTTAAGGAGTTTGTTGTGGCGCTGTCGGCTGTGTGGTGTTGTCGAAACCATCAGAAGTTTAGAGGGCGGGTCCCTTCAGCAGGACTTGTGGATTGGACAACGAATTATCTTGCTGTTTTTGGAGGGGCCTCTCGGGCTTATTGTGAAGGGTTTAGTGGGGTGCCTCGGAGTGTAGTAAAATGGCTCCGCCGGAGGAGGGATGGTATAAAGTGAATGTGGATGTTGCCTTTTGTGGGGACTTGTCTCGAGCAGGTGCTAGATTTGTTGTTCGGGATGAGGTAGGGCGAGTCATGTTGTCAGCCATGATCATGTGGGGAATTCAGACTTGGCAGAGGGGCTGGCGGTGGTGGACGGATTGAGACTTGTGGTGGATATGGGTTTAGCTCCGGTACTGCTGGAGACTGACTCTATGCGGGCTTATTCGCTACTGCAAGATCCTGCGATGGTGGATCTATCTGAGTTCGGTTTACTGGTCTCCGAGGCTCGAAAGGGTGCCTGCGCATTTTCAGCTCAGATTCAGCTTTACAAGGAGGGAAGGAAACTGTGTCACCCATGAGTTAGCCCGCTTTGCTTTGAGGGAGAGGGGTTGTGGGTATTGGATGGAATCGGTACCTGCGTGTGCTTACCTTCTGATTGAGGAAGATATTTTGTCCCTGTAACTGTTTTCTATGTACTAATGTTCTTGCAGGTGGCAGTCGAGTTTGGGTAGTTCGAGAACGGAAGCGATCCAAAGAACCAACTACACTGGAAATGTGATCAGACTGAGCAGCGACAACCACTACCCAATACCGACGTGCAGATAGCAGGGGAGGTTTTATGTTCCCCTGGACTCTAGAATCTATGTTGTGCATGTTTAGAGTGCTTTTGTGGGCGGGGTATGTTTTTTTAGGTTGAAGGATGGGCATTTTGTATGGTTGTGGATCCTAGGCTGAGGCTGGATGTTCTCGAGCCACAGGTTCCCTTTGGTTGCATGTGTAGGTTACTTTGGGATCTGTGTCTGGTTTATATGTTTAGTGGATCCTAGGCCGATGCTAGATGCACCTGAGCATCAACCCTCTCTTATGTATGTTTTCCTTGTGTTGCCCTGTTATGATTGGTTGGAGGGCCTTCCAGTTGTGCAGTGGGCCTATGTATTCTGTTGGGGCAATGTTCAAATCAAAGTTTTAATGGTTGTGATGATGTGTTGAGATGTTTAAGCATGACAGGGTCCTTATGTGCTAGTATGTTCTGTTCTTTAACCTGTGTTAAAATGAGGCGTGTGTAGCTGAACTTGAGATTTTAAAGCTTCCTTTGAGGTTTTCTTGCTTGTGTGAGCGTTGGGTCTCCCTTAGCTGTGTCGAAAGGCTGGGGTGGTTTTATGAGTCCCATAAGTCTGTTGTCACCCCGATAGGATCAAGGTTTTGTGTAGAATATAATTCTTGCTTTCTAGTATGTGAGGCCTACTCAGGGATGGTGGTATATAGGTCTTCCAAAAGAGTTGGGTGTGGTTTATACGTGAGTAGGGTTTTAGGGGTAAAAAGAGCTACCTTCAGTGTGACCAGTTAGGCCATCCAAGGATTTTCTTGGGTATGGGTCCCTGCATTTTAGTGTGAAAGCTAGTACCCTGTAAATAAAACCTAGGGAAAAATAAAATTAAAAAAAAAAAAGAAAAAGAAAAAAAGGGAAAGGTCCTCTTGCCTGGCCCTAAGTAAGGGGATAACATCCTAACTTGGTTGTTTTAGTTTCATGTGGGGCTTTGTTTCCCGTGTAGGGGGAAGATGGGTGGAGGGTCTTATAAATTAGTTTTGGGCTAGTAGGGGTTGCTTTAGGTGAGACTCTCACTCCTACGCGAGTTTTCCTTGGGAATGCTTTGATCTGTCTCGTATTTTGTTTACTTGCAATAGCTTCTCTCAGGTTAAGGGACTAGCATATGTAGTTCTTGGCCTTGAGCATGATAAATGTCAACACGTGAATCTAGGCAAGTCATACTATAGAATGGTGAACTTGATCAAGGTGTAGGGTAGTTTTGGGGTTTGGATAGAGTTTTGTCATGTTTAGCTCCTCCTTTACTCTCTTTTGGTTTATGTGCAAAGATGCTTTTGATGGTAATTTTGTTTGGCAGGTTTAAATATTGATTCTAGGCCCGTTCTGGAGGTGGTTAGATCGAACTCCCTGTATGGCTGACTTGGGGTGGAAATGAGTGAGGAGCTTGGAAGCTAGCTGGATTGCGGATAAAGTCATATGGTTATCTTCATAGATTAGGGCGTGCGCTTCGTGTGGGGATCAGTGCTGCACAATGGGTGGTGATTTTGGCTTATCTTTGAGTCTGTCCTTCGTGTGTGGAGGGTGTGACTTTTATCTGATTTTCCTTTGTACTGTTACTTTCTGAGCGGTTCTTTTGGCTTGATGAAAGGTTCTGATGATAAAAAAAAAATTAAATTAAAAAATACAATAAATTCGTTTACGAATTAGTTAAAAAGATAAATAACATTTTTCTTTTATTTACTTTCTGTATAACGATTCCTTCTACTTTCAAAGGGTGTTTACTACTCTTTTGAAAAATTAACCATTGGATAATCATTTGATTTTTTATTTTTTGTTTTTGAAAATTATGTCTGTTTTCTCTCAAATTCTCTAGAATAGTTTTTATCTTTGTTAATGGTCCATTTGAATTCCTAGTCAAATTCCAAAAATAAAAACAAGTTTTTGGAAACTACGACCTTGTTTAATAACTATTTTGTTTTTTGTTTTTGAAAATTAAACTTATAAACATTACTTCTACCTACAAGTTTCTTTGTTTTTTAGTATCTTATTTCTATGTTTTCAAAAACCAATTCAATTTTTTTTTTTTTTTAAACTAAGAAAAGTATTTTTCAATTGACTGGAAATTCAAATGTGTCATTGACAAAGATGAAAAACATGTTAAGGAAATTGGGGGAAAACAAACAAACGTAATTTTAAAAAACCAAATGATTATCAAATGAGAAGAAACTCATAAGGAAAAATAGGGGTGTATAAGTTTAATTTTCAAAAACAAAAAACTAAAAATCCAATAATTATCAAATGAAGCCTAAATATTAAATTTAGTCAAATTGTGTATCATTAAATATTAAGATACCAATTTCAAAGTTTCTAGAAATTTAAAAATTTTAAACAATCTTGAATTATTAAGATACCAATTTCTGGAAAAAAAAAATCAAATAAGATATGATTAAAAAAAAGAACAAAACAGAAAATAGATATACTTTTCAAAAAAATTCAAAAATTGGATAGTCAAGTAAAAGAAATTGAAGGCAAAGCAAAACCCTAATTGACATATACTTTTGATGAACAAGTCAAAAATTCGAATCGTCCGTTGTTGAACTAAAAAAAGAGTAATTAAGGTATGGGTAAAGGCGGAATATTCAAATTGAAACGGTGCCATATTAAATTGTTTAATTTTTTTCCATTCCAACGATAGCTCCAGTTTAGAGTGACAGAAAGTCAATCAGAATCGTCCACGTGTCTGATTCTAAATTTCTCACGAGTCCACGTAGATGGCGGGCAAAGTTAATGAGTCCGACAAGTTGCGTACCGATCCGATAATTTCCAACCATTAGAAAAGCGCCACGTAGTTAGAAATGTCAGCGGCAAAGGGATAAAGTCAAAGACTTGGCCGGATGACGTCAGATACCGAATTTATTATGATTTTTTCAGAAAAATAAGCGCATGGGAACCGGTGCCTTTGACCCGACTGAATCCAATAATGCTGTCGCCGTGGACTTTTTTTATCTGGTTCTTCGTTTGTTGATGACGTGGCGGGATTTTATTGGATGTTGTTTACGTGGAGCATGGACGTGGCGGTCGTGGTTGGTCGATAGCTCACCAGTTGAGTCCACTTTTGCACCTAACCTCTCTTAA

mRNA sequence

ATGTCGAGAAATGTCGAGCAATGTCGAGATGTCGACCAAAATGTCGAGATGTCGACGAAATGTCGAGATACGGTCCCCGGTCACGTTTTGGGTCTTGATTCTCAAGTGGCTGATCTCCTTAATGCCTCTGGTCAGTGGAATGATGAGCTTCTTCGACACCACTTTAGTCCTCGCAAGAGTGGGTATCAGCTTGGTCAGACGGCCTTGTTTGCCCAAATCCAATCGTTGTCTTCGAATGAGGCGTTGTCCAGTTGGTGGAAGGGGTCTTGGAAGATGGGGATCCCGAACAAAATTAAGGTTTTCCTTTGGACGCTTTGCCTAGAGCTTTCTACTGTTGACAACTTGAGTGTCAGGGGCATTGATGTTCTTAATGTATGTGTGCACTGTGGTTGGCATGGTGAATCATGCATGCATGTGTTTTGGCAGTGCAAGTTTTTTCGTGATTCATTGATGAGATATGAGTGGGAGGTTTTGTTGCATAGTGTCCAGGTGAATTCTATGCTTAATCTGCTAAGGGATGTGAAGGATAAGGTCGACTGGGCTAAGTTTAAGGAGTTTGTTGTGGCGCTGTCGGCTGTGTGGTGTTGTCGAAACCATCAGAAGTTTAGAGGGCGGGTCCCTTCAGCAGGACTTGTGGATTGGACAACGAATTATCTTGCTGTTTTTGGAGGGGCCTCTCGGGCTTATTGTGAAGGGTTTAGTGGGGTGCCTCGGAGTGTAGTAAAATGGCTCCGCCGGAGGAGGGATGGTATAAAGGCGAGTCATGTTGTCAGCCATGATCATGTGGGGAATTCAGACTTGGCAGAGGGGCTGGCGGTGGTGGACGGATTGAGACTTGTGGTGGATATGGGTTTAGCTCCGGTACTGCTGGAGACTGACTCTATGCGGGCTTATTCGCTACTGCAAGATCCTGCGATGGTGGATCTATCTGAGTTCGGTTTACTGGTCTCCGAGGCTCGAAAGGGTGCCTGCGCATTTTCAGCTCAGATTCAGCTTTACAAGGAGGGAAGGAAACTGTGGCAGTCGAGTTTGGGTAGTTCGAGAACGGAAGCGATCCAAAGAACCAACTACACTGGAAATGTTGAAGGATGGGCATTTTGTATGGTTGTGGATCCTAGGCTGAGGCTGGATGTTCTCGAGCCACAGGTTAAGGGACTAGCATATGTAGTTCTTGGCCTTGAGCATGATAAATGTCAACACGTGAATCTAGGCAAGTCATACTATAGAATGGTGAACTTGATCAAGAAAAATAAGCGCATGGGAACCGGTGCCTTTGACCCGACTGAATCCAATAATGCTGTCGCCGTGGACTTTTTTTATCTGGTTCTTCGTTTGTTGATGACGTGGCGGGATTTTATTGGATGTTGTTTACGTGGAGCATGGACGTGGCGGTCGTGGTTGGTCGATAGCTCACCAGTTGAGTCCACTTTTGCACCTAACCTCTCTTAA

Coding sequence (CDS)

ATGTCGAGAAATGTCGAGCAATGTCGAGATGTCGACCAAAATGTCGAGATGTCGACGAAATGTCGAGATACGGTCCCCGGTCACGTTTTGGGTCTTGATTCTCAAGTGGCTGATCTCCTTAATGCCTCTGGTCAGTGGAATGATGAGCTTCTTCGACACCACTTTAGTCCTCGCAAGAGTGGGTATCAGCTTGGTCAGACGGCCTTGTTTGCCCAAATCCAATCGTTGTCTTCGAATGAGGCGTTGTCCAGTTGGTGGAAGGGGTCTTGGAAGATGGGGATCCCGAACAAAATTAAGGTTTTCCTTTGGACGCTTTGCCTAGAGCTTTCTACTGTTGACAACTTGAGTGTCAGGGGCATTGATGTTCTTAATGTATGTGTGCACTGTGGTTGGCATGGTGAATCATGCATGCATGTGTTTTGGCAGTGCAAGTTTTTTCGTGATTCATTGATGAGATATGAGTGGGAGGTTTTGTTGCATAGTGTCCAGGTGAATTCTATGCTTAATCTGCTAAGGGATGTGAAGGATAAGGTCGACTGGGCTAAGTTTAAGGAGTTTGTTGTGGCGCTGTCGGCTGTGTGGTGTTGTCGAAACCATCAGAAGTTTAGAGGGCGGGTCCCTTCAGCAGGACTTGTGGATTGGACAACGAATTATCTTGCTGTTTTTGGAGGGGCCTCTCGGGCTTATTGTGAAGGGTTTAGTGGGGTGCCTCGGAGTGTAGTAAAATGGCTCCGCCGGAGGAGGGATGGTATAAAGGCGAGTCATGTTGTCAGCCATGATCATGTGGGGAATTCAGACTTGGCAGAGGGGCTGGCGGTGGTGGACGGATTGAGACTTGTGGTGGATATGGGTTTAGCTCCGGTACTGCTGGAGACTGACTCTATGCGGGCTTATTCGCTACTGCAAGATCCTGCGATGGTGGATCTATCTGAGTTCGGTTTACTGGTCTCCGAGGCTCGAAAGGGTGCCTGCGCATTTTCAGCTCAGATTCAGCTTTACAAGGAGGGAAGGAAACTGTGGCAGTCGAGTTTGGGTAGTTCGAGAACGGAAGCGATCCAAAGAACCAACTACACTGGAAATGTTGAAGGATGGGCATTTTGTATGGTTGTGGATCCTAGGCTGAGGCTGGATGTTCTCGAGCCACAGGTTAAGGGACTAGCATATGTAGTTCTTGGCCTTGAGCATGATAAATGTCAACACGTGAATCTAGGCAAGTCATACTATAGAATGGTGAACTTGATCAAGAAAAATAAGCGCATGGGAACCGGTGCCTTTGACCCGACTGAATCCAATAATGCTGTCGCCGTGGACTTTTTTTATCTGGTTCTTCGTTTGTTGATGACGTGGCGGGATTTTATTGGATGTTGTTTACGTGGAGCATGGACGTGGCGGTCGTGGTTGGTCGATAGCTCACCAGTTGAGTCCACTTTTGCACCTAACCTCTCTTAA

Protein sequence

MSRNVEQCRDVDQNVEMSTKCRDTVPGHVLGLDSQVADLLNASGQWNDELLRHHFSPRKSGYQLGQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLELSTVDNLSVRGIDVLNVCVHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWAKFKEFVVALSAVWCCRNHQKFRGRVPSAGLVDWTTNYLAVFGGASRAYCEGFSGVPRSVVKWLRRRRDGIKASHVVSHDHVGNSDLAEGLAVVDGLRLVVDMGLAPVLLETDSMRAYSLLQDPAMVDLSEFGLLVSEARKGACAFSAQIQLYKEGRKLWQSSLGSSRTEAIQRTNYTGNVEGWAFCMVVDPRLRLDVLEPQVKGLAYVVLGLEHDKCQHVNLGKSYYRMVNLIKKNKRMGTGAFDPTESNNAVAVDFFYLVLRLLMTWRDFIGCCLRGAWTWRSWLVDSSPVESTFAPNLS

Homology

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BLAST of Lag0025028 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 8.6e-23
Identity = 87/285 (30.53%), Postives = 126/285 (44.21%), Query Frame = 0


Query: 72   QIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVLNVCVHCG 131
            Q  S SS+E +  WW G WKM IPNKIKVFLW LCL+ L T  NLS RG+++ N C  CG
Sbjct: 822  QAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCG 881

Query: 132  WHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWAKFKEFVVAL 191
             +GE  +H+FW CKF     +  ++  L       S   +LR+  + +  A F+E  V +
Sbjct: 882  RNGEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVI 941

Query: 192  SAVWCCRNHQKFRGRVPSA-----GLVDWTTNYLAVFGGASRAYCEGFSGVPRSVVKWLR 251
              +W  RN + F     +       LV+W   Y   F     A     +G   +  + L 
Sbjct: 942  WGLWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEF---REAKSNPITGRVTNTAEILW 1001

Query: 252  RRRD------GIKASHVVSHDHVG------------------------NSDLAEGLAVVD 311
            +  D         AS + S  H G                        + D+AE +A V+
Sbjct: 1002 QPPDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVE 1061

Query: 312  GLRLVVDMGLAPVLLETDSMRAYSLLQDPAMVDLSEFGLLVSEAR 321
            GL+L  ++G+                  PA+ DLSE G +V +A+
Sbjct: 1062 GLQLASEIGM-----------------HPALEDLSETGEIVLKAK 1079

[Close]

BLAST of Lag0025028 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense])

HSP 1 Score: 92.8 bits (229), Expect = 8.6e-15
Identity = 83/341 (24.34%), Postives = 138/341 (40.47%), Query Frame = 0


Query: 36  VADLLNASGQWNDELLRHHFSPRKSGYQLGQTALF-AQIQSL------------------ 95
           V++L + SG WN EL+R+ F P  +   L    L  AQ  SL                  
Sbjct: 39  VSELCHPSGAWNSELIRNSFLPDDASLILSLPRLSPAQDDSLCWHFDKRGFYTVRSGYKV 98

Query: 96  ---------SSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVLNVC 155
                    SS+  LS WW+  WK  IPNK K+F W      L T   L+ R +DV++ C
Sbjct: 99  ALDLKKGIGSSSMQLSPWWRFLWKCNIPNKCKIFFWKAFNGWLPTFATLARRRVDVVDYC 158

Query: 156 VHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWAKFKEF 215
             C    ES  H+ W C    +   +   + ++  + V+   +++  +   VD   F   
Sbjct: 159 QVCNDDSESITHILWSCNSAVEVWRQLLGDDVIQRIVVSDFPSIILSLWRSVDSVVFNLL 218

Query: 216 VVALSAVWCCRNHQKFRGRV--PSAGLVDWTTNYLAVFGGASRA-YCEGFSGVPRSVVKW 275
           ++    +W  RN     G     +A +V W  N+   F  A+   + E  S  P     W
Sbjct: 219 IIGYWRLWTNRN-SVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQP----SW 278

Query: 276 LRRRRDGIKAS--------------HVVSHDHVGNS--------------DLAEGLAVVD 317
              +R   K +               V+  D+ G++              ++ E  A ++
Sbjct: 279 KTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACLE 338

[Close]

BLAST of Lag0025028 vs. NCBI nr
Match: KAF4391976.1 (hypothetical protein F8388_004305 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-12
Identity = 55/217 (25.35%), Postives = 96/217 (44.24%), Query Frame = 0


Query: 33  DSQVADLLNASGQWNDELLRHHFSPR------------------------------KSGY 92
           ++ V+ LLN   +WN + L ++F                                 KSGY
Sbjct: 42  NTTVSSLLNNKDEWNIDTLNNYFHKEDVPWILGIPIDTHSEDMLIWPFTKDGNYIVKSGY 101

Query: 93  QLGQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGID 152
           ++ +       +S S+ +   +WWK  W + +P ++K+F W +C   L    NL  RG+ 
Sbjct: 102 RVAREMNLTPTRS-SNMDQTHAWWKMWWGLNLPPRMKLFGWKMCRNWLPAKTNLVHRGMK 161

Query: 153 VLNVCVHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWA 212
           +  +C +CG   E+  H  W C+  +          ++   + NSM++LL + K K+   
Sbjct: 162 INPICTNCGRFDETLSHALWNCEKVKKVWKLMPSYNIIKDSRGNSMMDLLVEFKHKLAKE 221

Query: 213 KFKEFVVALSAVWCCRNHQKFRGRVPS-AGLVDWTTN 218
           +F++ V  L A+W  RN Q     + + A L+DW  N
Sbjct: 222 EFEDVVKVLWAIWENRNRQWTNQHIMNGARLLDWVFN 257

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BLAST of Lag0025028 vs. NCBI nr
Match: KAF4378355.1 (hypothetical protein G4B88_025848 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-12
Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 59  KSGYQLGQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSV 118
           KSGY++G+  +       S+  A+ SWWK  W + +P ++K+F W +C   L    NL  
Sbjct: 42  KSGYRVGR-EMNLNPTRCSNLTAVQSWWKMIWSLHLPPRMKLFGWRMCHNWLHAKTNLKH 101

Query: 119 RGIDVLNVCVHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDK 178
           RG+D+   C  CG + E+  H  W C   ++      W   +  +   SM ++L+ V+ +
Sbjct: 102 RGMDINTQCESCGRYDENLTHALWNCDKMKNIWKLLPWYKKISKLGEGSMFDVLQAVEQQ 161

Query: 179 VDWAKFKEFVVALSAVWCCRNHQKFRGRVPSAG---LVDWTTN 218
           V   +F++ +  L A+W  RN Q    ++PS     L++W  N
Sbjct: 162 VTRDEFEDTIKVLWAIWENRNRQ--WNQIPSMNGQQLLNWVFN 201

[Close]

BLAST of Lag0025028 vs. NCBI nr
Match: KAF4348169.1 (hypothetical protein F8388_014628 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-12
Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 59  KSGYQLGQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSV 118
           KSGY++G+  +       S+  A+ SWWK  W + +P ++K+F W +C   L    NL  
Sbjct: 42  KSGYRVGR-EMNLNPTRCSNLTAVQSWWKMIWSLHLPPRMKLFGWRMCHNWLHAKTNLKH 101

Query: 119 RGIDVLNVCVHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDK 178
           RG+D+   C  CG + E+  H  W C   ++      W   +  +   SM ++L+ V+ +
Sbjct: 102 RGMDINTQCESCGRYDENLTHALWNCDKMKNIWKLLPWYKKISKLGEGSMFDVLQAVEQQ 161

Query: 179 VDWAKFKEFVVALSAVWCCRNHQKFRGRVPSAG---LVDWTTN 218
           V   +F++ +  L A+W  RN Q    ++PS     L++W  N
Sbjct: 162 VTRDEFEDTIKVLWAIWENRNRQ--WNQIPSMNGQQLLNWVFN 201

[Close]

BLAST of Lag0025028 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.1e-23
Identity = 87/285 (30.53%), Postives = 126/285 (44.21%), Query Frame = 0


Query: 72   QIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVLNVCVHCG 131
            Q  S SS+E +  WW G WKM IPNKIKVFLW LCL+ L T  NLS RG+++ N C  CG
Sbjct: 822  QAPSSSSSEEVRCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCG 881

Query: 132  WHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWAKFKEFVVAL 191
             +GE  +H+FW CKF     +  ++  L       S   +LR+  + +  A F+E  V +
Sbjct: 882  RNGEDSIHLFWICKFAEALWINSKFGKL-------SPFLILRESHESLSKADFEELCVVI 941

Query: 192  SAVWCCRNHQKFRGRVPSA-----GLVDWTTNYLAVFGGASRAYCEGFSGVPRSVVKWLR 251
              +W  RN + F     +       LV+W   Y   F     A     +G   +  + L 
Sbjct: 942  WGLWNQRNARAFNDSTKTVFKIGMELVEWANKYAMEF---REAKSNPITGRVTNTAEILW 1001

Query: 252  RRRD------GIKASHVVSHDHVG------------------------NSDLAEGLAVVD 311
            +  D         AS + S  H G                        + D+AE +A V+
Sbjct: 1002 QPPDEGIYKINTDASFLASDQHAGLGIIIHNDRGQVMAAATKYLENIQSVDMAEAIAAVE 1061

Query: 312  GLRLVVDMGLAPVLLETDSMRAYSLLQDPAMVDLSEFGLLVSEAR 321
            GL+L  ++G+                  PA+ DLSE G +V +A+
Sbjct: 1062 GLQLASEIGM-----------------HPALEDLSETGEIVLKAK 1079

[Close]

BLAST of Lag0025028 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-15
Identity = 83/341 (24.34%), Postives = 138/341 (40.47%), Query Frame = 0


Query: 36  VADLLNASGQWNDELLRHHFSPRKSGYQLGQTALF-AQIQSL------------------ 95
           V++L + SG WN EL+R+ F P  +   L    L  AQ  SL                  
Sbjct: 39  VSELCHPSGAWNSELIRNSFLPDDASLILSLPRLSPAQDDSLCWHFDKRGFYTVRSGYKV 98

Query: 96  ---------SSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVLNVC 155
                    SS+  LS WW+  WK  IPNK K+F W      L T   L+ R +DV++ C
Sbjct: 99  ALDLKKGIGSSSMQLSPWWRFLWKCNIPNKCKIFFWKAFNGWLPTFATLARRRVDVVDYC 158

Query: 156 VHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHSVQVNSMLNLLRDVKDKVDWAKFKEF 215
             C    ES  H+ W C    +   +   + ++  + V+   +++  +   VD   F   
Sbjct: 159 QVCNDDSESITHILWSCNSAVEVWRQLLGDDVIQRIVVSDFPSIILSLWRSVDSVVFNLL 218

Query: 216 VVALSAVWCCRNHQKFRGRV--PSAGLVDWTTNYLAVFGGASRA-YCEGFSGVPRSVVKW 275
           ++    +W  RN     G     +A +V W  N+   F  A+   + E  S  P     W
Sbjct: 219 IIGYWRLWTNRN-SVVHGSAGWAAADMVTWIDNFANEFRLANELNHKEVLSHQP----SW 278

Query: 276 LRRRRDGIKAS--------------HVVSHDHVGNS--------------DLAEGLAVVD 317
              +R   K +               V+  D+ G++              ++ E  A ++
Sbjct: 279 KTPKRGEFKINCDASFQLRSGKAGVGVIIRDYKGSAIAARSSPVLCCSSVEMLEAQACLE 338

[Close]

BLAST of Lag0025028 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.7e-13
Identity = 75/333 (22.52%), Postives = 131/333 (39.34%), Query Frame = 0


Query: 36   VADLLNASGQWNDELLRHHFSPR-------------------------------KSGYQL 95
            V DL   +G+W++E +R  F+P                                +SGY++
Sbjct: 1514 VIDLKKGNGEWDEEFVRAVFNPTDAELILQMATSECDIEDKILWHYSKDGEYSVRSGYRM 1573

Query: 96   GQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVL 155
                    IQ  S+ EA + WW+  WK+ IP K+K F+W +    + T   L+ R + + 
Sbjct: 1574 AAALEVRDIQ--SNTEATNRWWRQLWKLKIPPKVKHFVWKMAHSWIPTNSALAHRKVQIE 1633

Query: 156  NVCVHCGWHG-ESCMHVFWQCKFFRDSLMRYEWEVLLHSVQV-----NSMLNLLRDVKDK 215
              C  C     E+  H  W C+   D      W++   S ++       +L  L  +   
Sbjct: 1634 PYCTRCSSGAYENVFHALWSCRVNCD-----VWKISGFSSKIKRQGKEDVLAFLMRMSSS 1693

Query: 216  VDWAKFKEFVVALSAVWCCRNHQKFRGRVP-SAGLVDWTTNYLAVFGGASRAYCEGFSGV 275
            +    F+ F+V    +W  RN     G  P +A +V+W + +LA F  ++       +G 
Sbjct: 1694 LAKEDFEYFLVLTWNLWYIRNSVNHGGHKPVAAAIVEWCSKFLAEFRDSN---VSQKAGA 1753

Query: 276  PRSVVKWLRRRR--------------DGIKASHVVSHDHVGNSDL--------------A 302
             R+  +W+   R              +G+ +   V  DH G   +              A
Sbjct: 1754 ARAAARWVAPVRGSYTINVDAGVKVGEGLASVSSVMRDHEGRVKVAAVRVVEKELSPLHA 1813

[Close]

BLAST of Lag0025028 vs. ExPASy TrEMBL
Match: A0A803PM68 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 88/342 (25.73%), Postives = 133/342 (38.89%), Query Frame = 0


Query: 36  VADLLNASGQWNDELLRHHFSPR-------------------------------KSGYQL 95
           V DL+  +G+W++E +R  F+P                                +SGY++
Sbjct: 300 VVDLMKGNGEWDEEFIRAFFNPTDAELILGMPTSEWEIEDKILWHYSKNGEYSVRSGYRM 359

Query: 96  GQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFLWTLCLE-LSTVDNLSVRGIDVL 155
                   IQ  S+ EA   WW+  WK+ IP K+K F+W +    L T   L+ R + V 
Sbjct: 360 AAALQVHDIQ--SNTEATERWWRLLWKLKIPPKVKHFVWKMAHSWLPTNSALAYRKVQVE 419

Query: 156 NVCVHCGWHG-ESCMHVFWQCKF---------FRDSLMRYEWEVLLHSVQVNSMLNLLRD 215
             C  C     E+  H  W C+          F   + R   E +L      + L  L  
Sbjct: 420 PYCTRCSSGAYENVFHALWGCRVNCEVWKLTGFHGRIKRQGKEDVL------AFLMRLSG 479

Query: 216 VKDKVDWAKFKEFVVALS-AVWCCRNHQKFRGRVP-SAGLVDWTTNYLAVF--GGASRAY 275
           +  K DW    EF + LS  +W  RN     G  P +A +VDW   +L+ F  G   + +
Sbjct: 480 MFSKDDW----EFFLILSWNLWYIRNSVNHGGHKPQAAAVVDWCGRFLSEFKDGCGPKKH 539

Query: 276 CEGFSGVPRSVVKWLRRRRDGIKAS---------------HVVSHDHVGN---------- 303
                GV R+  +W    RD  K +                 V  DH G           
Sbjct: 540 -----GVARAEARWQPPMRDSFKVNVDAGVKVGGGGYTSFSSVVRDHTGRVCAANATVVR 599

[Close]

BLAST of Lag0025028 vs. ExPASy TrEMBL
Match: A0A5C7HVU6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_012287 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-12
Identity = 95/327 (29.05%), Postives = 143/327 (43.73%), Query Frame = 0


Query: 48  DELLRHHFSPR-----KSGYQLGQTALFAQIQSLSSNEALSSWWKGSWKMGIPNKIKVFL 107
           D+ L  HF  R     +SGY++   AL  + ++ SS+  LSSWW+  WK  +PNK K+F 
Sbjct: 381 DDTLCWHFDRRGFYSVRSGYKV---ALGLKERAGSSSLQLSSWWRFLWKYNVPNKCKIFF 440

Query: 108 WTLCLE-LSTVDNLSVRGIDVLNVCVHCGWHGESCMHVFWQCKFFRDSLMRYEWEVLLHS 167
           W      L T   L+ R ++VL+ C+ CG   ES  HV W C+   D      W +LL  
Sbjct: 441 WKAFHGWLPTFATLARRRVNVLDHCLLCGTANESITHVLWSCQLAVD-----VWRLLLGE 500

Query: 168 VQVNSMLNLLRDVKDKVDWAK--FKEFVVALSAVWCCRNHQKFRGRVPSAGLVDWTTNYL 227
                +          V W      EF VA        NH++     P+     W    L
Sbjct: 501 ENAAVL----------VAWVDNFASEFRVANEP-----NHKEILSHQPT-----WKPPKL 560

Query: 228 AVFG---GASRAYCEGFSGVPRSVVKWLRRRRDGIKASHVVSHDHVGNS-DLAEGLAVVD 287
             F     AS     G +GV   +++  +      K+S V+    V NS ++ E  A + 
Sbjct: 561 GEFKINCDASFRLRSGTAGV-GVIIRNYKGTAIAAKSSPVL----VCNSIEMLEAHACLV 620

Query: 288 GLRLVVDMGLAPVLLETDSMRAYSLLQDPAMVDLSEFG---------------LLVSEAR 345
           GL+L +D+G++ V+LE+D+     LL D  +V  +E G               L V   R
Sbjct: 621 GLQLAIDVGISGVVLESDAEGVVRLLSD-HIVPRTEMGTIICRSLDLGASVRLLSVDAVR 673

The following BLAST results are available for this feature:

BLAST of Lag0025028 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150918.1	8.6e-23	30.53	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
TXG50387.1	8.6e-15	24.34	hypothetical protein EZV62_022911 [Acer yangbiense]	[more]
KAF4391976.1	1.8e-12	25.35	hypothetical protein F8388_004305 [Cannabis sativa]	[more]
KAF4378355.1	1.8e-12	29.45	hypothetical protein G4B88_025848 [Cannabis sativa]	[more]
KAF4348169.1	1.8e-12	29.45	hypothetical protein F8388_014628 [Cannabis sativa]	[more]

BLAST of Lag0025028 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0025028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAR4	4.1e-23	30.53	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5C7H0P0	4.2e-15	24.34	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1	[more]
A0A803PV25	8.7e-13	22.52	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PM68	1.1e-12	25.73	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5C7HVU6	2.5e-12	29.05	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01228...	[more]

BLAST of Lag0025028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 258..326 e-value: 6.1E-6 score: 26.1
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 74..147 e-value: 8.5E-12 score: 45.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0025028.1	Lag0025028.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity