Lag0025020 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025020
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCupin type-1 domain-containing protein
Locationchr10: 7811975 .. 7812451 (-)
RNA-Seq ExpressionLag0025020
SyntenyLag0025020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGTCAGCAGGTTCTGGAGAGCTTTGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAGCAGAACGCCGCCTCCGCCGGCCGTCGAAAGGCTCGAAAGTACCACTCAAAACGACGCCGTTGAGCCCCCCGGAGAAGAAACCGCCACACCCATTTTTGAAAAGCAGGAAAATGTGGAAGATGGTTGTGGGTTAGGGTGTGAAATGAAAACAGAGGAGAAGGAAGAGAAGAGGAGAAAAAGCAGAAGAAGGAGATCATCGTCGGGTTTGGGGCAGAGGAGGAAAATCGTTGGAGATTTGGATCTGATCAGTTGTGCTGTGAAGGAGATTTGTGAGTGTTGGTTGTTCGAAGAGAGAATTGGAAATGGGAATGGTTACCAGAGGAAGAAGAAGATGCCTCCGTTTGAAGATAGTATGGCGATGAAAGAGCACATCAGATCGTGGGCTTATGCAGTGGCTTGTACTGTTAGATGA

mRNA sequence

ATGGAAGGTCAGCAGGTTCTGGAGAGCTTTGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAGCAGAACGCCGCCTCCGCCGGCCGTCGAAAGGCTCGAAAGTACCACTCAAAACGACGCCGTTGAGCCCCCCGGAGAAGAAACCGCCACACCCATTTTTGAAAAGCAGGAAAATGTGGAAGATGGTTGTGGGTTAGGGTGTGAAATGAAAACAGAGGAGAAGGAAGAGAAGAGGAGAAAAAGCAGAAGAAGGAGATCATCGTCGGGTTTGGGGCAGAGGAGGAAAATCGTTGGAGATTTGGATCTGATCAGTTGTGCTGTGAAGGAGATTTGTGAGTGTTGGTTGTTCGAAGAGAGAATTGGAAATGGGAATGGTTACCAGAGGAAGAAGAAGATGCCTCCGTTTGAAGATAGTATGGCGATGAAAGAGCACATCAGATCGTGGGCTTATGCAGTGGCTTGTACTGTTAGATGA

Coding sequence (CDS)

ATGGAAGGTCAGCAGGTTCTGGAGAGCTTTGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAGCAGAACGCCGCCTCCGCCGGCCGTCGAAAGGCTCGAAAGTACCACTCAAAACGACGCCGTTGAGCCCCCCGGAGAAGAAACCGCCACACCCATTTTTGAAAAGCAGGAAAATGTGGAAGATGGTTGTGGGTTAGGGTGTGAAATGAAAACAGAGGAGAAGGAAGAGAAGAGGAGAAAAAGCAGAAGAAGGAGATCATCGTCGGGTTTGGGGCAGAGGAGGAAAATCGTTGGAGATTTGGATCTGATCAGTTGTGCTGTGAAGGAGATTTGTGAGTGTTGGTTGTTCGAAGAGAGAATTGGAAATGGGAATGGTTACCAGAGGAAGAAGAAGATGCCTCCGTTTGAAGATAGTATGGCGATGAAAGAGCACATCAGATCGTGGGCTTATGCAGTGGCTTGTACTGTTAGATGA

Protein sequence

MEGQQVLESFDSLWFFATVFSSRTPPPPAVERLESTTQNDAVEPPGEETATPIFEKQENVEDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLISCAVKEICECWLFEERIGNGNGYQRKKKMPPFEDSMAMKEHIRSWAYAVACTVR
Homology
BLAST of Lag0025020 vs. NCBI nr
Match: XP_038895160.1 (uncharacterized protein LOC120083464 [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 4.6e-50
Identity = 119/169 (70.41%), Postives = 134/169 (79.29%), Query Frame = 0

Query: 1   MEGQQVLESFDSLWFFATVFSSRTPPPPAVERLESTTQNDAVEPPGEETATPIFEKQEN- 60
           MEGQQVLE++DSLWFFATVFS+RTPPPP    +E+ TQND VEPPGEE ATP+   ++N 
Sbjct: 1   MEGQQVLENWDSLWFFATVFSNRTPPPPPPPVVENPTQNDFVEPPGEEIATPLTPNEQNN 60

Query: 61  ------VEDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLISCAVKEICE 120
                 +E+G G G  +KTEEKE+ RRK+R RR   GL QRRKIVG++DL S AVKEICE
Sbjct: 61  VGDEKKIENGGGFG--IKTEEKEQ-RRKNRGRR-CWGLEQRRKIVGEMDL-SYAVKEICE 120

Query: 121 CWLFEE-RIGNGNGYQRK---KKMPPFEDSMAMKEHIRSWAYAVACTVR 159
           CWLFEE RIG GN YQRK   KKMPPFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 CWLFEETRIGGGNQYQRKKKTKKMPPFEDSMAMKEHIRSWAYAVACTVR 164

BLAST of Lag0025020 vs. NCBI nr
Match: KAG7019562.1 (hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-46
Identity = 113/176 (64.20%), Postives = 127/176 (72.16%), Query Frame = 0

Query: 1   MEGQQVLESFDSLWFFATVFSSRTPPPPAVERLESTTQNDAVEPPGEETATPIFEKQENV 60
           ME QQVL++ DSLWFFATVFS+RTPPPP V  ++  TQ+D VEPPG E ATPIF+ Q+NV
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPPPV--VQKPTQHDFVEPPGGEIATPIFQNQQNV 60

Query: 61  ------------EDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLISCAV 120
                       E G GLG  +      E+RRKSR RR    LGQRRKIVG++DL S AV
Sbjct: 61  GEERNIVDEKTNETGGGLGLII-----TEERRKSRGRRWGC-LGQRRKIVGEMDL-SDAV 120

Query: 121 KEICECWLFEERIGNGNGYQR------KKKMPPFEDSMAMKEHIRSWAYAVACTVR 159
           KEICECWL E+RIG GN Y+R      KKKMPPFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KEICECWLLEQRIGGGNQYRRGRRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 167

BLAST of Lag0025020 vs. NCBI nr
Match: XP_022927166.1 (uncharacterized protein LOC111434099 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-45
Identity = 112/176 (63.64%), Postives = 125/176 (71.02%), Query Frame = 0

Query: 1   MEGQQVLESFDSLWFFATVFSSRTPPPPAVERLESTTQNDAVEPPGEETATPIFEKQENV 60
           ME QQVL++ DSLWFFATVFS+RTPPP     ++  TQ+D VEPPG E ATPIF+ Q+NV
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPV----VQKPTQHDFVEPPGGEIATPIFQNQQNV 60

Query: 61  ------------EDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLISCAV 120
                       E G GLG  +      E+RRKSR RR    LGQRRKIVG++DL S AV
Sbjct: 61  GEERNIVDEKTNETGGGLGLII-----TEERRKSRGRRWGC-LGQRRKIVGEMDL-SDAV 120

Query: 121 KEICECWLFEERIGNGNGYQR------KKKMPPFEDSMAMKEHIRSWAYAVACTVR 159
           KEICECWL E+RIG GN YQR      KKKMPPFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 KEICECWLLEQRIGGGNQYQRGGRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 165

BLAST of Lag0025020 vs. NCBI nr
Match: KAG6583945.1 (hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-45
Identity = 112/177 (63.28%), Postives = 125/177 (70.62%), Query Frame = 0

Query: 1   MEGQQVLESFDSLWFFATVFSSRTPPPPAVER-LESTTQNDAVEPPGEETATPIFEKQEN 60
           ME QQVL++ DSLWFFATVFS+RTPPPP     ++  TQND  EPPG E ATPIF+ Q+N
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPPPPPPVVQKPTQNDFDEPPGGEIATPIFQNQQN 60

Query: 61  V------------EDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLISCA 120
           V            E G GLG  +      E+RRKSR RR    LGQRRKIVG++DL S A
Sbjct: 61  VGEERNIVDEKTNETGGGLGLII-----TEERRKSRGRRWGC-LGQRRKIVGEMDL-SDA 120

Query: 121 VKEICECWLFEERIGNGNGYQR------KKKMPPFEDSMAMKEHIRSWAYAVACTVR 159
           VKEICECWL E+RIG GN Y+R      KKKMPPFEDSMAMKEHIRSWAYAVACTVR
Sbjct: 121 VKEICECWLLEQRIGGGNQYRRGRRKMKKKKMPPFEDSMAMKEHIRSWAYAVACTVR 170

BLAST of Lag0025020 vs. NCBI nr
Match: XP_023520136.1 (uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 112/179 (62.57%), Postives = 125/179 (69.83%), Query Frame = 0

Query: 1   MEGQQVLESFDSLWFFATVFSSRTPPPPAVER---LESTTQNDAVEPPGEETATPIFEKQ 60
           ME QQVL++ DSLWFFATVFS+RTPPPP       ++  TQND VEPPG E ATPIF+ Q
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPPPPPPPPVVQKPTQNDFVEPPGGEIATPIFQNQ 60

Query: 61  ENV------------EDGCGLGCEMKTEEKEEKRRKSRRRRSSSGLGQRRKIVGDLDLIS 120
           +NV            E G GLG  +      E+RRKSR RR    LGQRRKIVG++DL S
Sbjct: 61  QNVGEERNIVDEKTNETGGGLGLII-----TEERRKSRGRRWGC-LGQRRKIVGEMDL-S 120

Query: 121 CAVKEICECWLFEERIGNGNGYQR------KKKMPPFEDSMAMKEHIRSWAYAVACTVR 159
            AVKEICECWL E+RIG GN YQR      KKKMPPFEDSMAMKEHIRSWA+AVAC VR
Sbjct: 121 DAVKEICECWLLEQRIGGGNQYQRGRRKMKKKKMPPFEDSMAMKEHIRSWAFAVACIVR 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895160.14.6e-5070.41uncharacterized protein LOC120083464 [Benincasa hispida][more]
KAG7019562.16.9e-4664.20hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022927166.19.9e-4563.64uncharacterized protein LOC111434099 [Cucurbita moschata][more]
KAG6583945.19.9e-4563.28hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023520136.11.3e-4462.57uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..92
NoneNo IPR availablePANTHERPTHR33785:SF8SUBFAMILY NOT NAMEDcoord: 1..158
NoneNo IPR availablePANTHERPTHR33785FAMILY NOT NAMEDcoord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025020.1Lag0025020.1mRNA