Lag0025013 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0025013
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRho_N domain-containing protein
Locationchr10: 7781426 .. 7782767 (-)
RNA-Seq ExpressionLag0025013
SyntenyLag0025013
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTTGGATATTCAAAGAATTGCATTTTTCTGGGAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACTCTAATCCGATTTCCCAATTTGGTCTCATTCGGAAGAAGACCCATTTTCGCTTTGAAAGGTATGAAACTCCACTTCGATTATCAGATTCCCAGACAACCCATCTTGAATTTTGCAAATCCATTTTGAAATCATAGAGAACAAGCTCTAATGGTTTGTTTGTCGATATCATTCGGCTTTATCTGCTTAGCTAAGTACTTAATTTGAACAATCTTTTTGAGTTTTGTCTGCACTTTTTATTGCAGAATTTGTAGATCTTGTGTACTTCACAAGCTGAGGGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGACATTGCAGATGGTTATCCCAGCAAGAGCATTCAATTATCTGTTTCAAGCAATAGGCCAGATGGAAATGCAGGGCATCGACCTCCTCGTAGAAGTTCTGCGCCTGGAAGAACCAGGAGGAATGAACCCTCGAGGAAAACAGATGCCCATAAGAATGAGGAAGACCTAAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTCAGAAAGATACAGACTTCCATTGCTAAGGATTCCGCAAGCACCAATGATGAAGATTCCCAGAAGGATGAACATGGAGCCGAGTCTATTTTGGAGACTCTTCGTGAATCAAGGAAGCAAGTGAAAGGTAATTTCTTGATTGTCTCATCTGATGCTTTTTGTGAGAAATTTGCCCCACCTTTGAATCCATCAATGCATCTGGGAAGAACTAAAATTCATAAACATCTCCTTTATAGCATACAAGAAGCGAGGAAAGAACCTTAACAATAAGTGAGTGACCAGCACAATTGGCAAAATGGCAATGTGATTCTATTCCCGAACCAACATACATTTCACATACCTATAAGTAAATGTATGTGCACTATCGGCAAGTTATGATTAACAAATTTTGATCTCACGCGCTATTGACAGGCAAAACTTCAAAGAAGACAGGAGCTAAAGTGTTGAGAAGAAAAGGCACGTCTGAAGATAAGGAAACGAATCATACTTCGCCGGTGGCAGATTTCAAATTAGTACGACCACCATCTAAATTTGTGAAGAGATCACCCATCCCGTCTCCCTCAGGAGGAAATGGTTCACATCTTAGAGTGGAGGCCTCTCAGGCCATAGCTGAAACCACAGAGTCGAAGTTCCCAAGTATAGAGGATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCAAGAGGATTTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAACTCCTGAGATCCTAA

mRNA sequence

ATGCAGTTTGGATATTCAAAGAATTGCATTTTTCTGGGAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACTCTAATCCGATTTCCCAATTTGGTCTCATTCGGAAGAAGACCCATTTTCGCTTTGAAAGCTTGTTAAATTTGGCAGACATTGCAGATGGTTATCCCAGCAAGAGCATTCAATTATCTGTTTCAAGCAATAGGCCAGATGGAAATGCAGGGCATCGACCTCCTCGTAGAAGTTCTGCGCCTGGAAGAACCAGGAGGAATGAACCCTCGAGGAAAACAGATGCCCATAAGAATGAGGAAGACCTAAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTCAGAAAGATACAGACTTCCATTGCTAAGGATTCCGCAAGCACCAATGATGAAGATTCCCAGAAGGATGAACATGGAGCCGAGTCTATTTTGGAGACTCTTCGTGAATCAAGGAAGCAAGTGAAAGGCAAAACTTCAAAGAAGACAGGAGCTAAAGTGTTGAGAAGAAAAGGCACGTCTGAAGATAAGGAAACGAATCATACTTCGCCGGTGGCAGATTTCAAATTAGTACGACCACCATCTAAATTTGTGAAGAGATCACCCATCCCGTCTCCCTCAGGAGGAAATGGTTCACATCTTAGAGTGGAGGCCTCTCAGGCCATAGCTGAAACCACAGAGTCGAAGTTCCCAAGTATAGAGGATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCAAGAGGATTTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAACTCCTGAGATCCTAA

Coding sequence (CDS)

ATGCAGTTTGGATATTCAAAGAATTGCATTTTTCTGGGAAAATCAGATGGAAGCAGTAGTTTTCCAGTCTCGAACTCTAATCCGATTTCCCAATTTGGTCTCATTCGGAAGAAGACCCATTTTCGCTTTGAAAGCTTGTTAAATTTGGCAGACATTGCAGATGGTTATCCCAGCAAGAGCATTCAATTATCTGTTTCAAGCAATAGGCCAGATGGAAATGCAGGGCATCGACCTCCTCGTAGAAGTTCTGCGCCTGGAAGAACCAGGAGGAATGAACCCTCGAGGAAAACAGATGCCCATAAGAATGAGGAAGACCTAAAAAAACCCAAATCAAATAACCAGGAGGAAATAATTGCTCTCTTCAGAAAGATACAGACTTCCATTGCTAAGGATTCCGCAAGCACCAATGATGAAGATTCCCAGAAGGATGAACATGGAGCCGAGTCTATTTTGGAGACTCTTCGTGAATCAAGGAAGCAAGTGAAAGGCAAAACTTCAAAGAAGACAGGAGCTAAAGTGTTGAGAAGAAAAGGCACGTCTGAAGATAAGGAAACGAATCATACTTCGCCGGTGGCAGATTTCAAATTAGTACGACCACCATCTAAATTTGTGAAGAGATCACCCATCCCGTCTCCCTCAGGAGGAAATGGTTCACATCTTAGAGTGGAGGCCTCTCAGGCCATAGCTGAAACCACAGAGTCGAAGTTCCCAAGTATAGAGGATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCAAGAGGATTTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTCATGGAACTCCTGAGATCCTAA

Protein sequence

MQFGYSKNCIFLGKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKSIQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEPSRKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS
Homology
BLAST of Lag0025013 vs. NCBI nr
Match: XP_022139842.1 (uncharacterized protein LOC111010657 isoform X1 [Momordica charantia])

HSP 1 Score: 371.3 bits (952), Expect = 7.1e-99
Identity = 213/275 (77.45%), Postives = 231/275 (84.00%), Query Frame = 0

Query: 1   MQFGYSKNCIFLGKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKS 60
           MQFGYSKNCIF GKSDG SSFPVSNS  +SQFGL  K+THFRFESLLNLA+IA    SK 
Sbjct: 1   MQFGYSKNCIFQGKSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKG 60

Query: 61  IQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEPSRKTDAHKNEEDLKKPKSNNQEEIIAL 120
           IQ+SV+SN   GNAG RPPRRSS PGRTR+NEP+R   A    EDLK PKSNNQEEIIAL
Sbjct: 61  IQVSVTSN-GGGNAGQRPPRRSSGPGRTRKNEPNRNEAA----EDLKNPKSNNQEEIIAL 120

Query: 121 FRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTS 180
           FRKIQTSIAKDSA+T DEDS +DE GAESILE+LRESRKQVKG+TSKK G KVLRRKG S
Sbjct: 121 FRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGIS 180

Query: 181 EDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNG--SHLRVEASQAIAETTESKFPS 240
           E+ E  HTSP A+FKLVRPPSKFVKRSPIPSP G NG  S LR E SQAIAE+ E KFPS
Sbjct: 181 EEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPS 240

Query: 241 IEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           +E+MKLTELKA+AKSRG KGYSKLKKNEL+ELLRS
Sbjct: 241 VENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 269

BLAST of Lag0025013 vs. NCBI nr
Match: XP_008446702.1 (PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein BP-73 [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 4.2e-91
Identity = 198/264 (75.00%), Postives = 221/264 (83.71%), Query Frame = 0

Query: 13  GKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKSIQLSVSSNRPDG 72
           GKSDGSSSFP S SNP+SQF L  KKTH RFESLLNLADIAD YPSK+IQLSVS+NRPDG
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGHRPPRRSSAPGRTRRNE-PSRKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSIAKD 132
           NA +RPPRR+S PG+TR++E  SRK +A KNEE++KK K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHTS-- 192
           SAS+ DE+S KDEHGA SILETLRE RKQ+KGKTSKK GAKV R KGTSE+KE +  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTELKA 252
           P ADFKLVRPPSKFVKRSPIP          +V+ASQAIAE+ E KFPSIE+MKL ELKA
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAELKA 259

Query: 253 LAKSRGFKGYSKLKKNELMELLRS 274
           LAKSRG KGYSKLKKNELME+LRS
Sbjct: 260 LAKSRGIKGYSKLKKNELMEILRS 274

BLAST of Lag0025013 vs. NCBI nr
Match: XP_011648505.1 (uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 9.6e-88
Identity = 193/266 (72.56%), Postives = 221/266 (83.08%), Query Frame = 0

Query: 11  FLGKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKSIQLSVSSNRP 70
           F  KSDGSSSFP SNSNP SQF L  KKTH RFESLLNLAD+AD YPSK+IQ SVS +RP
Sbjct: 11  FWRKSDGSSSFPASNSNPFSQFNLFEKKTHVRFESLLNLADVADVYPSKNIQPSVSKSRP 70

Query: 71  DGNAGHRPPRRSSAPGRTRRNE-PSRKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSIA 130
           DGNAG+RPPRR+S PG+ R++E  SRKT+  K+EE +KK ++N+QEE+IALFRKIQTSIA
Sbjct: 71  DGNAGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIA 130

Query: 131 KDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHTS 190
           K+SAS+ DE+S+KDE+   SILETLRESRKQ+KGKTSKK GAKVLR KG SE+KE +  S
Sbjct: 131 KESASSIDEESRKDENA--SILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPS 190

Query: 191 --PVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTEL 250
             P ADFKLVRPPSKFVKRSPIP         L+V+ASQAIAE+ E KFPS E+MKLTEL
Sbjct: 191 PPPAADFKLVRPPSKFVKRSPIP---------LKVDASQAIAESRELKFPSTENMKLTEL 250

Query: 251 KALAKSRGFKGYSKLKKNELMELLRS 274
           KALAKSRG KGYSKLKKNELME+LRS
Sbjct: 251 KALAKSRGIKGYSKLKKNELMEILRS 265

BLAST of Lag0025013 vs. NCBI nr
Match: XP_038893911.1 (SAP-like protein BP-73 isoform X2 [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 8.1e-87
Identity = 186/231 (80.52%), Postives = 207/231 (89.61%), Query Frame = 0

Query: 45  SLLNLADIADGYPSKSIQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEP-SRKTDAHKNE 104
           +LLNLADIAD YPSK IQLSVS+NRPDG AG+RPPRR SAPG+TR+NEP SRKT+AH NE
Sbjct: 45  NLLNLADIADVYPSKGIQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNE 104

Query: 105 EDLKKPKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVKG 164
           EDLKK K NNQEEIIALFRKI+TSIAK+SAS+NDE+S KDEHGAESILETLRESRKQVKG
Sbjct: 105 EDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKG 164

Query: 165 KTSKKTGAKVLRRKGTSEDKETNHTS-PVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRV 224
           K+SKK GAK LR +GTSE+KE +  S P ADF+LVRPPSKFVKRSPIPSP  GNGSH RV
Sbjct: 165 KSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHPRV 224

Query: 225 EASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           +A+QAIAE+ E KFPSI++MKLTELKALAKSRG KGYSKLKKNEL+ELL S
Sbjct: 225 DATQAIAESRELKFPSIKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 275

BLAST of Lag0025013 vs. NCBI nr
Match: XP_038893910.1 (SAP-like protein BP-73 isoform X1 [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 4.5e-85
Identity = 186/235 (79.15%), Postives = 207/235 (88.09%), Query Frame = 0

Query: 45  SLLNLADIADGYPSKSIQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEP-SRKTDAHKNE 104
           +LLNLADIAD YPSK IQLSVS+NRPDG AG+RPPRR SAPG+TR+NEP SRKT+AH NE
Sbjct: 45  NLLNLADIADVYPSKGIQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNE 104

Query: 105 EDLKKPKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVK- 164
           EDLKK K NNQEEIIALFRKI+TSIAK+SAS+NDE+S KDEHGAESILETLRESRKQVK 
Sbjct: 105 EDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKE 164

Query: 165 ---GKTSKKTGAKVLRRKGTSEDKETNHTS-PVADFKLVRPPSKFVKRSPIPSPSGGNGS 224
              GK+SKK GAK LR +GTSE+KE +  S P ADF+LVRPPSKFVKRSPIPSP  GNGS
Sbjct: 165 LWTGKSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGS 224

Query: 225 HLRVEASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           H RV+A+QAIAE+ E KFPSI++MKLTELKALAKSRG KGYSKLKKNEL+ELL S
Sbjct: 225 HPRVDATQAIAESRELKFPSIKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 279

BLAST of Lag0025013 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 3.4e-99
Identity = 213/275 (77.45%), Postives = 231/275 (84.00%), Query Frame = 0

Query: 1   MQFGYSKNCIFLGKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKS 60
           MQFGYSKNCIF GKSDG SSFPVSNS  +SQFGL  K+THFRFESLLNLA+IA    SK 
Sbjct: 1   MQFGYSKNCIFQGKSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKG 60

Query: 61  IQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEPSRKTDAHKNEEDLKKPKSNNQEEIIAL 120
           IQ+SV+SN   GNAG RPPRRSS PGRTR+NEP+R   A    EDLK PKSNNQEEIIAL
Sbjct: 61  IQVSVTSN-GGGNAGQRPPRRSSGPGRTRKNEPNRNEAA----EDLKNPKSNNQEEIIAL 120

Query: 121 FRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTS 180
           FRKIQTSIAKDSA+T DEDS +DE GAESILE+LRESRKQVKG+TSKK G KVLRRKG S
Sbjct: 121 FRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGIS 180

Query: 181 EDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNG--SHLRVEASQAIAETTESKFPS 240
           E+ E  HTSP A+FKLVRPPSKFVKRSPIPSP G NG  S LR E SQAIAE+ E KFPS
Sbjct: 181 EEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPS 240

Query: 241 IEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           +E+MKLTELKA+AKSRG KGYSKLKKNEL+ELLRS
Sbjct: 241 VENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 269

BLAST of Lag0025013 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 2.0e-91
Identity = 198/264 (75.00%), Postives = 221/264 (83.71%), Query Frame = 0

Query: 13  GKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKSIQLSVSSNRPDG 72
           GKSDGSSSFP S SNP+SQF L  KKTH RFESLLNLADIAD YPSK+IQLSVS+NRPDG
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGHRPPRRSSAPGRTRRNE-PSRKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSIAKD 132
           NA +RPPRR+S PG+TR++E  SRK +A KNEE++KK K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHTS-- 192
           SAS+ DE+S KDEHGA SILETLRE RKQ+KGKTSKK GAKV R KGTSE+KE +  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTELKA 252
           P ADFKLVRPPSKFVKRSPIP          +V+ASQAIAE+ E KFPSIE+MKL ELKA
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAELKA 259

Query: 253 LAKSRGFKGYSKLKKNELMELLRS 274
           LAKSRG KGYSKLKKNELME+LRS
Sbjct: 260 LAKSRGIKGYSKLKKNELMEILRS 274

BLAST of Lag0025013 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 2.0e-91
Identity = 198/264 (75.00%), Postives = 221/264 (83.71%), Query Frame = 0

Query: 13  GKSDGSSSFPVSNSNPISQFGLIRKKTHFRFESLLNLADIADGYPSKSIQLSVSSNRPDG 72
           GKSDGSSSFP S SNP+SQF L  KKTH RFESLLNLADIAD YPSK+IQLSVS+NRPDG
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGHRPPRRSSAPGRTRRNE-PSRKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSIAKD 132
           NA +RPPRR+S PG+TR++E  SRK +A KNEE++KK K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHTS-- 192
           SAS+ DE+S KDEHGA SILETLRE RKQ+KGKTSKK GAKV R KGTSE+KE +  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTELKA 252
           P ADFKLVRPPSKFVKRSPIP          +V+ASQAIAE+ E KFPSIE+MKL ELKA
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP---------KVDASQAIAESRELKFPSIENMKLAELKA 259

Query: 253 LAKSRGFKGYSKLKKNELMELLRS 274
           LAKSRG KGYSKLKKNELME+LRS
Sbjct: 260 LAKSRGIKGYSKLKKNELMEILRS 274

BLAST of Lag0025013 vs. ExPASy TrEMBL
Match: A0A6J1GSF6 (uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC111456710 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 8.2e-77
Identity = 179/265 (67.55%), Postives = 201/265 (75.85%), Query Frame = 0

Query: 11  FLGKSDGSSSFPVSNSNPISQFGLI-RKKTHFRFESLLNLADIADGYPSKSIQLSVSSNR 70
           F  KS+GSSS  VSN NP  QFGL  +++THF FESLLNLA+IADGY SKSIQL+VSSN 
Sbjct: 57  FWEKSNGSSSSSVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNG 116

Query: 71  PDGNAGHRPPRRSSAPGRTRRNEPS-RKTDAHKNEEDLKKPKSNNQEEIIALFRKIQTSI 130
            DG  GH+P RRSSAPGRTR+N  S RKTD HKN ED+KKPKSNNQEEIIALFRKIQTSI
Sbjct: 117 NDGKTGHQPVRRSSAPGRTRKNVSSLRKTDTHKN-EDMKKPKSNNQEEIIALFRKIQTSI 176

Query: 131 AKDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKKTGAKVLRRKGTSEDKETNHT 190
           A+++AS+ DE+S KDE G ESILE L ESRKQVKGKT K  G K LRR GTSE       
Sbjct: 177 AEEAASSIDENSNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSE------- 236

Query: 191 SPVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVEASQAIAETTESKFPSIEDMKLTELK 250
              A+FKLVRPPS FVKRSPIPSP+GGNG+HL                 ++E+MKL ELK
Sbjct: 237 -AAAEFKLVRPPSNFVKRSPIPSPAGGNGTHL-----------------TVENMKLKELK 295

Query: 251 ALAKSRGFKGYSKLKKNELMELLRS 274
           A+AKSRG KGYSKLKKNEL+ELL S
Sbjct: 297 AVAKSRGIKGYSKLKKNELLELLTS 295

BLAST of Lag0025013 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 9.1e-76
Identity = 172/227 (75.77%), Postives = 188/227 (82.82%), Query Frame = 0

Query: 49  LADIADGYPSKSIQLSVSSNRPDGNAGHRPPRRSSAPGRTRRNEPSRKTDAHKNEEDLKK 108
           L +IA    SK IQ+SV+SN   GNAG RPPRRSS PGRTR+NEP+R   A    EDLK 
Sbjct: 27  LKEIAAVNSSKGIQVSVTSN-GGGNAGQRPPRRSSGPGRTRKNEPNRNEAA----EDLKN 86

Query: 109 PKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAESILETLRESRKQVKGKTSKK 168
           PKSNNQEEIIALFRKIQTSIAKDSA+T DEDS +DE GAESILE+LRESRKQVKG+TSKK
Sbjct: 87  PKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKK 146

Query: 169 TGAKVLRRKGTSEDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNG--SHLRVEASQ 228
            G KVLRRKG SE+ E  HTSP A+FKLVRPPSKFVKRSPIPSP G NG  S LR E SQ
Sbjct: 147 AGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQ 206

Query: 229 AIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           AIAE+ E KFPS+E+MKLTELKA+AKSRG KGYSKLKKNEL+ELLRS
Sbjct: 207 AIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 248

BLAST of Lag0025013 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-21
Identity = 72/173 (41.62%), Postives = 99/173 (57.23%), Query Frame = 0

Query: 109 PKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAE-----SILETLRESRKQVKG 168
           P  +NQEEII+L ++IQ+SI+K  +   +E+   DE   E     +IL+ L +SRK+ +G
Sbjct: 90  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149

Query: 169 KTSKKTGAKVLRRKGTSEDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVE 228
            TS K                     P    +L RPPS FVKR+P+ S + G    L V 
Sbjct: 150 DTSVK------------------EKPPKRQVELPRPPSSFVKRTPLSSSASGPRGKLPVS 209

Query: 229 AS-QAIAETT--ESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
            S +A+ + T  E K   IE MKL ELK +AK+RG KGYSKL+K+EL+EL+RS
Sbjct: 210 NSDKALGKLTKKEEKASLIETMKLAELKEVAKNRGIKGYSKLRKSELLELIRS 244

BLAST of Lag0025013 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14
Identity = 60/170 (35.29%), Postives = 84/170 (49.41%), Query Frame = 0

Query: 109 PKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAE-----SILETLRESRKQVKG 168
           P  +NQEEII+L ++IQ+SI+K  +   +E+   DE   E     +IL+ L +SRK+ +G
Sbjct: 90  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 149

Query: 169 KTSKKTGAKVLRRKGTSEDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVE 228
            TS K                     P    +L RPPS FVKR+P+ S + G        
Sbjct: 150 DTSVK------------------EKPPKRQVELPRPPSSFVKRTPLSSSASGP------- 209

Query: 229 ASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
                                 ELK +AK+RG KGYSKL+K+EL+EL+RS
Sbjct: 210 ---------------------RELKEVAKNRGIKGYSKLRKSELLELIRS 213

BLAST of Lag0025013 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14
Identity = 60/170 (35.29%), Postives = 84/170 (49.41%), Query Frame = 0

Query: 109 PKSNNQEEIIALFRKIQTSIAKDSASTNDEDSQKDEHGAE-----SILETLRESRKQVKG 168
           P  +NQEEII+L ++IQ+SI+K  +   +E+   DE   E     +IL+ L +SRK+ +G
Sbjct: 65  PSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTEG 124

Query: 169 KTSKKTGAKVLRRKGTSEDKETNHTSPVADFKLVRPPSKFVKRSPIPSPSGGNGSHLRVE 228
            TS K                     P    +L RPPS FVKR+P+ S + G        
Sbjct: 125 DTSVK------------------EKPPKRQVELPRPPSSFVKRTPLSSSASGP------- 184

Query: 229 ASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
                                 ELK +AK+RG KGYSKL+K+EL+EL+RS
Sbjct: 185 ---------------------RELKEVAKNRGIKGYSKLRKSELLELIRS 188

BLAST of Lag0025013 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 45.4 bits (106), Expect = 8.3e-05
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 223 EASQAIAETTESKFPSIEDMKLTELKALAKSRGFKGYSKLKKNELMELLRS 274
           +A +   E  E     + ++KL EL+ +AKSRG KG SK+KK EL+ELL S
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139842.17.1e-9977.45uncharacterized protein LOC111010657 isoform X1 [Momordica charantia][more]
XP_008446702.14.2e-9175.00PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein ... [more]
XP_011648505.19.6e-8872.56uncharacterized protein LOC105434499, partial [Cucumis sativus][more]
XP_038893911.18.1e-8780.52SAP-like protein BP-73 isoform X2 [Benincasa hispida][more]
XP_038893910.14.5e-8579.15SAP-like protein BP-73 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CF223.4e-9977.45uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7UMB72.0e-9175.00SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9... [more]
A0A1S3BFQ92.0e-9175.00SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1[more]
A0A6J1GSF68.2e-7767.55uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC1114567... [more]
A0A6J1CGN39.1e-7675.77uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT4G18740.12.8e-2141.62Rho termination factor [more]
AT4G18740.21.2e-1435.29Rho termination factor [more]
AT4G18740.31.2e-1435.29Rho termination factor [more]
AT1G06190.18.3e-0547.06Rho termination factor [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011112Rho termination factor, N-terminalPFAMPF07498Rho_Ncoord: 240..269
e-value: 2.0E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..189
NoneNo IPR availablePANTHERPTHR34449:SF2RHO TERMINATION FACTORcoord: 15..273
NoneNo IPR availablePANTHERPTHR34449RHO TERMINATION FACTORcoord: 15..273

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0025013.1Lag0025013.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination