Lag0024986 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024986
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 7485072 .. 7485891 (-)
RNA-Seq ExpressionLag0024986
SyntenyLag0024986
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCTGTCTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCGGAAGGTTGGGCCGTGTATAAAGGGATCCAACTTGCTCGACAGTTGGGGTTTGCTGAGTTTGTGGTGGAGACCGACTCTCTAAGGTTGGTTAAAATCCTTCATGGTGGTATCCAGGATGTTTCGGAAGTAGGGCGGCTGATGGAGGATGTCCGTTGATCCTCCAGCCTTGGGACAACAACAAGATTTTGTTTTCGCCACGCCAAGGAAACAGGGTGGCGCATGTTTTGGCTAGCCTGGCCTTTTCTTATGTTGACCATGTGTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGGTGTGATGTGTTGTCTTCCCTTTGAGGAAGTATTCTGTGCGATTAAGGTATTCGATCTAAGCAACTGCAGTCTCTTCCAGCCGCTGTGTTTAATCAGGGAAGGTTTCTGTTTCCTTATTCTTGTTGGCTTTGTACTTTGTTCTTATGATTGCATGTTAGATTAGGCTATGGGGACATTGCATGATGTTTGGCTGTGGAGGGTAATTTATGCATGCTAGTGGACCTTGGTCCAAGTATGGATGGTTTCTGCGCGTCAGATTGTTTACTTGCATGATTCTGGTTTGGTTTTCCTCTCTAATAGAACTGGGTTTGAGGCCATGCGGCTGTGTGGTGGTCCTCTTTTGGAACAGGGCTGGTTTTGGCGTCGAGTGGTGGGGTTGGTTGTGGGGCTTGTTGGGGATAAACCATGTATGTGCAGTTGTGCTTTATCTTTTCCTGGGATTGAGGTGGTGGCAGGTGGCATATTCTGA

mRNA sequence

ATGGCAGCCTGTCTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCGGAAGGTTGGGCCGTGTATAAAGGGATCCAACTTGCTCGACAGTTGGGGTTTGCTGAGTTTGTGGTGGAGACCGACTCTCTAAGCCTTGGGACAACAACAAGATTTTGTTTTCGCCACGCCAAGGAAACAGGGTGGCGCATGTTTTGGCTAGCCTGGCCTTTTCTTATGTTGACCATGTGTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGAACTGGGTTTGAGGCCATGCGGCTGTGTGGTGGTCCTCTTTTGGAACAGGGCTGGTTTTGGCGTCGAGTGGTGGGGTTGGTTGTGGGGCTTGTTGGGGATAAACCATGTATGTGCAGTTGTGCTTTATCTTTTCCTGGGATTGAGGTGGTGGCAGGTGGCATATTCTGA

Coding sequence (CDS)

ATGGCAGCCTGTCTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCGGAAGGTTGGGCCGTGTATAAAGGGATCCAACTTGCTCGACAGTTGGGGTTTGCTGAGTTTGTGGTGGAGACCGACTCTCTAAGCCTTGGGACAACAACAAGATTTTGTTTTCGCCACGCCAAGGAAACAGGGTGGCGCATGTTTTGGCTAGCCTGGCCTTTTCTTATGTTGACCATGTGTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGAACTGGGTTTGAGGCCATGCGGCTGTGTGGTGGTCCTCTTTTGGAACAGGGCTGGTTTTGGCGTCGAGTGGTGGGGTTGGTTGTGGGGCTTGTTGGGGATAAACCATGTATGTGCAGTTGTGCTTTATCTTTTCCTGGGATTGAGGTGGTGGCAGGTGGCATATTCTGA

Protein sequence

MAACLSLQRCWSVDLAEGWAVYKGIQLARQLGFAEFVVETDSLSLGTTTRFCFRHAKETGWRMFWLAWPFLMLTMCWLEEGPSEISDVLRTGFEAMRLCGGPLLEQGWFWRRVVGLVVGLVGDKPCMCSCALSFPGIEVVAGGIF
Homology
The following BLAST results are available for this feature:
BLAST of Lag0024986 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0024986 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..45
e-value: 6.5E-7
score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024986.1Lag0024986.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity