Lag0024980 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024980
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionsignaling peptide TAXIMIN 1-like
Locationchr10: 7444569 .. 7444943 (+)
RNA-Seq ExpressionLag0024980
SyntenyLag0024980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTGCTGCTGTTTTGAGAAATGTAATTGCAGGCCTCTCGGCTTTCTTCTTGGCCTTCCGTTCGCCTTCCTCGCCCTCTTCGTTGGCTTCATTGGTGTTGTTATTTGGATCTTTGGGTGTGTACAGACATCGAACATCGCTTTCTCTCGTTTAATAACTGTTTTGTTTTCGGTCTTATATTTTAAAAGCTTGGCCAAATCTTTTAAGATTCGTCGTTTTTCAAGCTTGTTTCAATTTTGGTTTTGCAGATCTATGTTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATTAGTGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAGATCCCATGTTAG

mRNA sequence

ATGTGCTGCTGCTGTTTTGAGAAATGTAATTGCAGGCCTCTCGGCTTTCTTCTTGGCCTTCCGTTCGCCTTCCTCGCCCTCTTCGTTGGCTTCATTGGTGTTGTTATTTGGATCTTTGGATCTATGTTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATTAGTGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAGATCCCATGTTAG

Coding sequence (CDS)

ATGTGCTGCTGCTGTTTTGAGAAATGTAATTGCAGGCCTCTCGGCTTTCTTCTTGGCCTTCCGTTCGCCTTCCTCGCCCTCTTCGTTGGCTTCATTGGTGTTGTTATTTGGATCTTTGGATCTATGTTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATTAGTGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAGATCCCATGTTAG

Protein sequence

MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFALALISAPILVMKWFTSKIPC
Homology
BLAST of Lag0024980 vs. NCBI nr
Match: XP_022139803.1 (uncharacterized protein LOC111010630 [Momordica charantia])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFA 60
          MCCCC EKCNCRPLGFLLGLPFAFLALF+GFIG +IWIFGS+ TCICPCCLCVTVVVEFA
Sbjct: 1  MCCCCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFA 60

Query: 61 LALISAPILVMKWFTSKIPC 81
          LALI+APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

BLAST of Lag0024980 vs. NCBI nr
Match: XP_022955033.1 (uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 uncharacterized protein LOC111801456 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFA 60
          MCCCC E CNCRPLGFLLGLPFAFLALFVGF+G++IWIFGS+ +CICPCCLCVTV VEFA
Sbjct: 1  MCCCCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFA 60

Query: 61 LALISAPILVMKWFTSKIPC 81
          LALI+ PILVMKWFTSKIPC
Sbjct: 61 LALINVPILVMKWFTSKIPC 80

BLAST of Lag0024980 vs. NCBI nr
Match: XP_008443051.1 (PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 0

Query: 1  MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFA 60
          MCCCC EKCNCRPLGFLLGLPFAFL++FVGF+GVVIWI GS+ +CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALISAPILVMKWFTSKIPC 81
          LALI+APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

BLAST of Lag0024980 vs. NCBI nr
Match: XP_004149050.1 (signaling peptide TAXIMIN 1 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFA 60
          MCCCC EKCNCRPLGFLL LPFAFL++FVGF+GVVIWI GS+ +CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALISAPILVMKWFTSKIPC 81
          LALI+APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

BLAST of Lag0024980 vs. NCBI nr
Match: KAF3965153.1 (hypothetical protein CMV_010635 [Castanea mollissima])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0

Query: 1  MCCCCFEKCNCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFA 60
          MCCCC E C CRPLGFLLGLPFAFL+L V  +G+++WI G   TCICPCCLCVT++VEFA
Sbjct: 1  MCCCCGEDCECRPLGFLLGLPFAFLSLLVSLVGIIVWIVGLALTCICPCCLCVTIIVEFA 60

Query: 61 LALISAPILVMKWFTSKIPC 81
          LA+I APILVMKWFTSKIPC
Sbjct: 61 LAMIKAPILVMKWFTSKIPC 80

BLAST of Lag0024980 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-23
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 10 NCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFALALISAPIL 69
          +CRPLGFLLGLPFAFL+L +  IGV+IWI G + +CICPCCLCVTV+VE A+ LI API 
Sbjct: 5  DCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIH 64

Query: 70 VMKWFTSKIPC 81
          VM+WF SKIPC
Sbjct: 65 VMEWFMSKIPC 75

BLAST of Lag0024980 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-17
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 10 NCRPLGFLLGLPFAFLALFVGFIGVVIWIFGSMFTCICPCCLCVTVVVEFALALISAPIL 69
          +CRPLGFL+GLPFA +AL +  +G VIWI G++ +C+CPCC C   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 70 VMKWFTSKIPC 81
          V++WFT  IPC
Sbjct: 63 VLRWFTHSIPC 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139803.13.1e-3491.25uncharacterized protein LOC111010630 [Momordica charantia][more]
XP_022955033.11.7e-3286.25uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 unchar... [more]
XP_008443051.12.2e-3286.25PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo][more]
XP_004149050.11.1e-3185.00signaling peptide TAXIMIN 1 [Cucumis sativus][more]
KAF3965153.13.3e-2876.25hypothetical protein CMV_010635 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
O822755.6e-2371.83Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2[more]
Q1G3091.2e-1754.93Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33834:SF9PROTEIN, PUTATIVE-RELATEDcoord: 1..80
NoneNo IPR availablePANTHERPTHR33834SIGNALING PEPTIDE TAXIMIN 2coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024980.1Lag0024980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane