Lag0024954 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024954
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr10: 7242937 .. 7248522 (+)
RNA-Seq Expression	Lag0024954
Synteny	Lag0024954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAAATGAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTAGTCTCTATAAACAAAAAAAAAGGTTCTTTGCTCTGCAATTCCTTCCCCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTACAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCACTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCACAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCTTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTATCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTTTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTTCTTCTCCCTGAGTTCGAAGGTTCTCACGCGCTTCAATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGATTCGTTGTAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGTTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACATCCTCGTTCCGTTTCATCTTCAAATGTTGGTAGTTGATGGCAGCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGCTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAAAATGCTTGATATCAAACCACAAAAAAAAAAAAAAAAAAAAAGACAATAAAGGTGTTGTTAAAAAAGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGGTGATCACCCCTTCAAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGGTGATCACCCCTTCAAGATACTACAGTCATCAAAGTGACTGGTCTAGGCAGGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCTTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATAAAGGCGAATCTGGTGGCTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGATATCACTGCAAGCGAATTTGGTGACGACTGTTGCACGAAGCTTACACATTCAAGGAAGAAAGAAACAAATTGAAAAAAAAAATGAAAATTAAAAAAAAATAATAAAAAACGAAAAGTATAAAAAAAACGAAAATTAAAAAAAAATAAAAATAAAAAACGAAAAGTATAAAAAAAAACGAAAATTAAAATTAAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAGTTTCCTACTTGGATCCCTTCTTGAATGCTCTCTGCAATTGATGTGTGCTCTCCCCTACTGAGGTTCAGTCTTATTTATAGGGGGAGTTTTAAGTTCAAATCAAAAGTTTAGATAAAGATTTAACTCAAATGAAATCCTATCTCCTGTTCAAAATTTTATGGGATAATCTTTATCTTTATCTGAACCAACTTAATTAAATTGAAATTCCTAAAAGATAAGTGTTTCAATTCAAATCAATTTGGGAATTCAAATTTTATCTAAATAATTTTATTTGCGCATACTCCAAATTTTTCTTCCAAATCAAAATTTGAGAGTCAAACATCAAATTCTATTCCAAATGCAAGTTTGAATTTGGTAAAATTTTACCTCAAATTATATTTTGGGCATAATCCAAATTTTATCCCAAATGGACCAAAGTCCAAACCTCAAGATATATTCCATATGCAAGTTAAAATTGGGTAGGATTTTACCTCAAATCAAAATTTGGGTATAAACCAAATTTTGTCAAAACTTGAAATCAAAGTTTGCTGCCAAACAAGGAAAATCAAAATTTTGACCAAACCCCAAATTTTGATTAATTGGCAATAAAAGTGTGTCAAATAAAAAAATAAAAATTTGACCAAAATTCATATTTTGATTAAATTGACGCACCAAATGGAGTCAAAGTCAAGAACAAATACCTTGCATTTTAATTCCAAAATTTATTTTTCGAGATTCACTCACACATAACTTGTGCCTAAATCTCGAAAAGGGGGCATTTGTTGAAGGAGAAATTTTGGCCAATCACAAATTGCCACGTCATTAATATAAATTAATAATAAAATAAATTTGGGACCAGTTACACATTTACACGTGTGCCTAAATTAAATTAATAGACATTAAAATTCGGCAAATCAAAGAATGTCACTTGTCTATTAGTGATCCATCAGATAACATCAGCCAAGTTCAATCAGATTATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTCTAGGGGATTGAGATTCGGGGATTCAGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTCAGAAGATCCAATATTCAGAATTCAACCAACTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGATCAATAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGACCATCCAAGAAGAGATCAGCAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGTAGGCCGATCATCCAAGAAGAGATCAGCAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGTAGGCCGATCATCCAAGAAGATCAATAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCAATAAGCCAATCGACCGATCAAGAAGATCAACAAGCTAAAAAGCCGATTCGAAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGCTAACAAGCCGATTCGACAAATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAAGAAGATCAACAAGTTAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAGAGGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCTAA

mRNA sequence

ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAAATGAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGCAGCTTAAAGAAAACTTTAAGTTAGTCTCTATAAACAAAAAAAAAGGTTCTTTGCTCTGCAATTCCTTCCCCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTACAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCACTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCACAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCTTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTATCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTTTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTTCTTCTCCCTGAGTTCGAAGGTTCTCACGCGCTTCAATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGTTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCTTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGATATCACTGCAAGCGAATTTGAGGAGGCCACCATTCATTCTAGGGGATTGAGATTCGGGGATTCAGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTCAGAAGATCCAATATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGCTAACAAGCCGATTCGACAAATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAAGAAGATCAACAAGTTAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAGAGGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCTAA

Coding sequence (CDS)

ATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATTGATCAAGACCATGACAAAAATGAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGCAGCTTAAAGAAAACTTTAAGTTAGTCTCTATAAACAAAAAAAAAGGTTCTTTGCTCTGCAATTCCTTCCCCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTACAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCACTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTTGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCACAAGTTCGAAGGTTCCCACGCGCTTCGCTGCAGTTCCTTCTTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTATCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTTTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTTCTTCTCCCTGAGTTCGAAGGTTCTCACGCGCTTCAATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGTTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCTGGTGATGAAGTCACTGCAAGTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCTTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGATATCACTGCAAGCGAATTTGAGGAGGCCACCATTCATTCTAGGGGATTGAGATTCGGGGATTCAGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTCAGAAGATCCAATATTCAGAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAAAGATCAACAAGCTAACAAGCCGATTCGACAAATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACTGATCATCCAAGAAGATCAACAAGTTAGTAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGTAGACCGATCATCCAAAGAGGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGTCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCTAA

Protein sequence

MFGVHLHSTFSFPKAKCLHIEEKSIFNIVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPANEGLIKTMTKMRAFKCKSSLSQEPKLHDAPSPHELKRQLKENFKLVSINKKKGSLLCNSFPKFDGSHAALLEFLLPKFEGSHALRCSSFSPRSKVLTRCVAVLSPQVRRFTHFATVPSPKFEGSHALRCSSFLQVRRFSTAAVHSSKFKGSHVASLQFLPPSSKVLTCFTAVPSLQGRRFSRAALQFFLPKFEGSRTSLQFLLPNLKVLTRFALQFLPPSSKVLTRFVQFLPPIRRFSRASVKFLPPSLKVLTHFAAVPSPQVRRFPRASLQFLLHSSKVLTRFAAVPSPKFEGSHVASLQFLPPSLKVITCFAAVPSLQGRRFSRAALQFFLPKFEGSRTSLQFLLPNSKVLTRFALQFLPPSSKVLTRFVQFLPPIRRFSRTSLQFLPPSSKVLTRFAAVPSSQLKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSSFLQVRRFSRVSLQFLLPEFEGSHALQCSSFLPKFEVPSSKFEGSHALRCTVPSSKFEGSHALRCYLPPSSKVLSRAAAAPSSKFEGSLTRFARSFSKFEGASLHCSFSKFEGASLRCYLPPSSKVLSRAAAVPSSKFEGSLTRFARSFSKFEGASLRCYLPPSSKVLSRAAAVPSSKFEGSLTRFVRSFSKFEGASLRCYFSKFEGASLHCSFSKFEGASLHCSFSKFEGNYSHQSDWSRQVVKSLQLNLMTTVVGESGDEVTASESDDDRCRRVESGDHPCRLLRSPNKMGTGLAGVHEGESGDYPCRLLRSPNEIGDWSSRSDITASEFEEATIHSRGLRFGDSDQRTQSPENSARVQSHQKSESLENSEDPIFRIQPTQDSEDHQANRPIKKINKSADRSSNRSSEKINKSVDRSSKKINKLTSRFDKSSSQSTDQEDQQVSRLIIQEDQQVSRPIIKPIIREDQQVSRPIIQRGSTSHNRPIQEIIKPAGRSSKKINKPISRSKRSSS

Homology

[Close]

BLAST of Lag0024954 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-14
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 191 FDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 250

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 251 IIFTNPINEG 260

[Close]

BLAST of Lag0024954 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-14
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M  L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 660 FDRLKMTNDQQQREMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 719

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 720 IIFTNPINEG 729

[Close]

BLAST of Lag0024954 vs. NCBI nr
Match: KAA0068201.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-14
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 302 FDRLKMTNDQQQREMKSLKAKPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 361

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 362 IIFTNPINEG 371

[Close]

BLAST of Lag0024954 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-14
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 132 FDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 192 IIFTNPINEG 201

[Close]

BLAST of Lag0024954 vs. NCBI nr
Match: TYK28989.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-14
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 391 FDRLKMTNDQQQREMKSLKAKPFCEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 450

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 451 IIFTNPTNEG 460

[Close]

BLAST of Lag0024954 vs. ExPASy TrEMBL
Match: A0A5A7VRG7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001010 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-15
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 302 FDRLKMTNDQQQREMKSLKAKPFHEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 361

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 362 IIFTNPINEG 371

[Close]

BLAST of Lag0024954 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-15
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 132 FDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 192 IIFTNPINEG 201

[Close]

BLAST of Lag0024954 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-15
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 191 FDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 250

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 251 IIFTNPINEG 260

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BLAST of Lag0024954 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-15
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M  L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 660 FDRLKMTNDQQQREMKTLKAKPFQEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 719

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 720 IIFTNPINEG 729

[Close]

BLAST of Lag0024954 vs. ExPASy TrEMBL
Match: A0A5D3DZZ8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00890 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.1e-15
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 30  FDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKVKPNL 89
           FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL VKP  
Sbjct: 391 FDRLKMTNDQQQREMKSLKAKPFCEKNDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 450

Query: 90  IILTNPANEG 100
           II TNP NEG
Sbjct: 451 IIFTNPTNEG 460

The following BLAST results are available for this feature:

BLAST of Lag0024954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	1.4e-14	67.14	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0032121.1	1.4e-14	67.14	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068201.1	1.4e-14	67.14	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21121.1 retrotranspos...	[more]
KAA0050734.1	1.4e-14	67.14	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
TYK28989.1	1.9e-14	67.14	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0024954 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0024954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VRG7	7.0e-15	67.14	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BBF9	7.0e-15	67.14	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TQ06	7.0e-15	67.14	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SRE2	7.0e-15	67.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DZZ8	9.1e-15	67.14	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lag0024954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 835..854
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1020..1034
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 893..912
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 885..991
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 976..991
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1016..1060
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 935..975
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 920..934

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024954.1	Lag0024954.1	mRNA