Lag0024949 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024949
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ethylene-responsive transcription factor 12
Location	chr10: 7208330 .. 7208851 (+)
RNA-Seq Expression	Lag0024949
Synteny	Lag0024949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTCGCGAGGGCCACTACAGAGGCGTCAGAAAGCGCCCATGGGGTCGCTACGCCGCCGAGATACGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGACACTCCTGAAGAGGCCGCCCTTGCCTACGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCTAAAACCAACTTCCCCCCTCCTCTCTCCGCCGCTGCCGGCCTCTCCCTCGACCTCAACGTCTCCGGCCCCACTTCCTGCAACTGGCCCACTGCCACCGCCGCCACTTGCTCGCCCTCTTCCTCTTCTGCCCGTCTCGTCCTCGGCGATTTCCTCCGGCACGGCGCTCGCAACGACCTGTGCAATGTGAATGTCAATATGGAGGCGTCTCCGGCCACGAAACGCCTCGCTCCCGTGCTGGTGGACTCGAGCGCTCCGGCGGCCTCCGCTACGGCGTCGTTCATTGGGCACGTGCGGCGTGGGCTCCCCTTTGATCTCAACGAGCCTCCACCGGTGTGGCTATGA

mRNA sequence

ATGGCTTCCACTCGCGAGGGCCACTACAGAGGCGTCAGAAAGCGCCCATGGGGTCGCTACGCCGCCGAGATACGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGACACTCCTGAAGAGGCCGCCCTTGCCTACGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCTAAAACCAACTTCCCCCCTCCTCTCTCCGCCGCTGCCGGCCTCTCCCTCGACCTCAACGTCTCCGGCCCCACTTCCTGCAACTGGCCCACTGCCACCGCCGCCACTTGCTCGCCCTCTTCCTCTTCTGCCCGTCTCGTCCTCGGCGATTTCCTCCGGCACGGCGCTCGCAACGACCTGTGCAATGTGAATGTCAATATGGAGGCGTCTCCGGCCACGAAACGCCTCGCTCCCGTGCTGGTGGACTCGAGCGCTCCGGCGGCCTCCGCTACGGCGTCGTTCATTGGGCACGTGCGGCGTGGGCTCCCCTTTGATCTCAACGAGCCTCCACCGGTGTGGCTATGA

Coding sequence (CDS)

ATGGCTTCCACTCGCGAGGGCCACTACAGAGGCGTCAGAAAGCGCCCATGGGGTCGCTACGCCGCCGAGATACGCGACCCTTGGAAGAAGACCCGTGTCTGGTTGGGCACTTTCGACACTCCTGAAGAGGCCGCCCTTGCCTACGACGGCGCCGCCAGGTCCCTCCGCGGCTCCAAGGCTAAAACCAACTTCCCCCCTCCTCTCTCCGCCGCTGCCGGCCTCTCCCTCGACCTCAACGTCTCCGGCCCCACTTCCTGCAACTGGCCCACTGCCACCGCCGCCACTTGCTCGCCCTCTTCCTCTTCTGCCCGTCTCGTCCTCGGCGATTTCCTCCGGCACGGCGCTCGCAACGACCTGTGCAATGTGAATGTCAATATGGAGGCGTCTCCGGCCACGAAACGCCTCGCTCCCGTGCTGGTGGACTCGAGCGCTCCGGCGGCCTCCGCTACGGCGTCGTTCATTGGGCACGTGCGGCGTGGGCTCCCCTTTGATCTCAACGAGCCTCCACCGGTGTGGCTATGA

Protein sequence

MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNFPPPLSAAAGLSLDLNVSGPTSCNWPTATAATCSPSSSSARLVLGDFLRHGARNDLCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPVWL

Homology

[Close]

BLAST of Lag0024949 vs. NCBI nr
Match: XP_023001756.1 (ethylene-responsive transcription factor 12 [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 141/175 (80.57%), Postives = 149/175 (85.14%), Query Frame = 0


Query: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPPPLSAAAGLSLDLNVSG-PTSCNWPTATAA-TCSPSSSSARLVLGDFLRHGARND 120
           KTNFPPP      LSLDLNVS  PT+CNWP+++AA + S SSSSARL+LGDFLRHGARND
Sbjct: 61  KTNFPPP------LSLDLNVSSTPTTCNWPSSSAAPSSSSSSSSARLLLGDFLRHGARND 120

Query: 121 LCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPVWL 174
           LCNVNV  EASP        LVDS  PA + TASF+GHVRRGLPFDLNEPPPVWL
Sbjct: 121 LCNVNV--EASPG-------LVDSRDPAPNTTASFMGHVRRGLPFDLNEPPPVWL 160

[Close]

BLAST of Lag0024949 vs. NCBI nr
Match: KAG6583981.1 (Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.7 bits (683), Expect = 7.0e-68
Identity = 144/183 (78.69%), Postives = 150/183 (81.97%), Query Frame = 0


Query: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPPPLSAAAGLSLDLNVSG-PTSCNWPT-----ATAATCSPSSSS----ARLVLGDF 120
           KTNFPPP      LSLDLNVS  PT+CNWP+     A AAT +PSSSS    ARL+LGDF
Sbjct: 61  KTNFPPP------LSLDLNVSSTPTTCNWPSSSSSAAAAATAAPSSSSSSSAARLLLGDF 120

Query: 121 LRHGARNDLCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPP 174
           LRHGARNDLCNVNV  EASP        LVDSS PA + TASF+GHVRRGLPFDLNEPPP
Sbjct: 121 LRHGARNDLCNVNV--EASPG-------LVDSSDPAPNTTASFMGHVRRGLPFDLNEPPP 168

[Close]

BLAST of Lag0024949 vs. NCBI nr
Match: XP_022927218.1 (ethylene-responsive transcription factor 12-like [Cucurbita moschata])

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-67
Identity = 141/181 (77.90%), Postives = 148/181 (81.77%), Query Frame = 0


Query: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPPPLSAAAGLSLDLNVSG-PTSCNWPT-------ATAATCSPSSSSARLVLGDFLR 120
           KTNFPPP      LSLDLNVS  PT+CNWP+       A A + S SSS+ARL+LGDFLR
Sbjct: 61  KTNFPPP------LSLDLNVSSTPTTCNWPSSSSSSAAAAAPSSSSSSSAARLLLGDFLR 120

Query: 121 HGARNDLCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPVW 174
           HGARNDLCNVNV  EASP        LVDSS PA + TASF+GHVRRGLPFDLNEPPPVW
Sbjct: 121 HGARNDLCNVNV--EASPG-------LVDSSDPAPNTTASFMGHVRRGLPFDLNEPPPVW 166

[Close]

BLAST of Lag0024949 vs. NCBI nr
Match: KAG7019604.1 (Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.4 bits (677), Expect = 3.5e-67
Identity = 141/182 (77.47%), Postives = 148/182 (81.32%), Query Frame = 0


Query: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPPPLSAAAGLSLDLNVSG-PTSCNWPT--------ATAATCSPSSSSARLVLGDFL 120
           KTNFPPP      LSLDLNVS  PT+CNWP+        A A + S SSS+ARL+LGDFL
Sbjct: 61  KTNFPPP------LSLDLNVSSTPTTCNWPSSSSSSAAAAAAPSSSSSSSAARLLLGDFL 120

Query: 121 RHGARNDLCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPV 174
           RHGARNDLCNVNV  EASP        LVDSS PA + TASF+GHVRRGLPFDLNEPPPV
Sbjct: 121 RHGARNDLCNVNV--EASPG-------LVDSSDPAPNTTASFMGHVRRGLPFDLNEPPPV 167

[Close]

BLAST of Lag0024949 vs. NCBI nr
Match: XP_023520106.1 (ethylene-responsive transcription factor 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 7.7e-67
Identity = 140/180 (77.78%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 1   MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60
           MASTRE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA
Sbjct: 1   MASTREAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKA 60

Query: 61  KTNFPPPLSAAAGLSLDLNVSG-PTSCNWPT------ATAATCSPSSSSARLVLGDFLRH 120
           KTNFPPP      LSLDLNVS  PT+CNWP+      A A + S SSS+ARL+LGDFLRH
Sbjct: 61  KTNFPPP------LSLDLNVSSTPTTCNWPSSSSSSAAAAPSSSSSSSAARLLLGDFLRH 120

Query: 121 GARNDLCNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPVWL 174
           GARNDLCNVNV  EASP        LVDS  PA + TASF+GHVRRGLPFDLNEPPPVWL
Sbjct: 121 GARNDLCNVNV--EASPG-------LVDSRDPAPNTTASFMGHVRRGLPFDLNEPPPVWL 165

[Close]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot
Match: Q94ID6 (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=ERF12 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-37
Identity = 105/196 (53.57%), Postives = 115/196 (58.67%), Query Frame = 0


Query: 1   MAST---REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG 60
           MAST   RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG
Sbjct: 1   MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG 60

Query: 61  SKAKTNFPPPLSAAAGLSLDLN--VSGPTSC-----NWP-------TATAATCSPSSSSA 120
            KAKTNFP P      LSLDLN   S P++      N P        A      PSS   
Sbjct: 61  IKAKTNFPSP------LSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHH 120

Query: 121 RLVLGDFLRHGARNDLCNVNVNMEA------SPATKRLAPVLVDSSAPAASATASFIGHV 174
                 FLR G  ND  +   + EA      SP T   +P       P  +++ S +  V
Sbjct: 121 HQHHRIFLRTGVLNDKTSDYSSTEAPLYFTSSPNTATSSPGYQVVGFPMMNSSPSPV-TV 180

[Close]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 76/190 (40.00%), Postives = 97/190 (51.05%), Query Frame = 0


Query: 4   TREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTN 63
           ++E  +RGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+ E+AA AYD AAR+LRG KAKTN
Sbjct: 23  SKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTN 82

Query: 64  FPPPLSAAAGLSLDLNVSGP---TSCNWPTATAATCS-PSSSSARLVLGDFLRHGARNDL 123
           FP P +     +   N +      S  +P         P+SSS    +  F   G R   
Sbjct: 83  FPLPYAHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQRPTSSSMSSTVESF--SGPRPPP 142

Query: 124 CNVNVNMEASPATKRLAPVLVDSSAPAASATASFIGH------------------VRRGL 172
                   +S    R  PV+ D       +++S + H                   R+ L
Sbjct: 143 APRQQTTASSRKYTRSPPVVPDDCHSDCDSSSSVVDHGDCEKENDNDNDNIASSSFRKPL 202

[Close]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot
Match: Q40477 (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum OX=4097 GN=ERF4 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 5  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
          +E HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNF
Sbjct: 23 KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 65 PPP 68
          P P
Sbjct: 83 PSP 85

[Close]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot
Match: Q9LW49 (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 5  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
          +E HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNF
Sbjct: 23 KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 65 PPP 68
          P P
Sbjct: 83 PLP 85

[Close]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot
Match: Q9FE67 (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ERF9 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-23
Identity = 79/177 (44.63%), Postives = 89/177 (50.28%), Query Frame = 0


Query: 5   REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGSKAKTNF 64
           +E H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGSKAKTNF
Sbjct: 29  KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query: 65  PPPLSAAAGLSLDLNVSGPTSCNWPTATAATCSPSSSS--------ARLVLGDFLRHGAR 124
           P P     G S  +N  G         T  T    +           R V+G +   G  
Sbjct: 89  PLP-----GESTTVNDGGENDSYVNRTTVTTAREMTRQRFPFACHRERKVVGGYASAGFF 148

Query: 125 NDLCN-VNVNMEASPATK-RLAPVLVDSSAPAASATASFIGHVRRGLPFDLNEPPPV 172
            D     ++  E S     R  PV ++ S              RR L  DLN  PPV
Sbjct: 149 FDPSRAASLRAELSRVCPVRFDPVNIELSIGIRETVKV---EPRRELNLDLNLAPPV 197

The following BLAST results are available for this feature:

BLAST of Lag0024949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001756.1	4.1e-68	80.57	ethylene-responsive transcription factor 12 [Cucurbita maxima]	[more]
KAG6583981.1	7.0e-68	78.69	Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma sub...	[more]
XP_022927218.1	2.7e-67	77.90	ethylene-responsive transcription factor 12-like [Cucurbita moschata]	[more]
KAG7019604.1	3.5e-67	77.47	Ethylene-responsive transcription factor 12, partial [Cucurbita argyrosperma sub...	[more]
XP_023520106.1	7.7e-67	77.78	ethylene-responsive transcription factor 12 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0024949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94ID6	3.9e-37	53.57	Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
Q9SXS8	1.9e-23	40.00	Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ...	[more]
Q40477	1.9e-23	82.54	Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum OX=4097 GN=ERF4 ...	[more]
Q9LW49	3.2e-23	82.54	Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
Q9FE67	3.2e-23	44.63	Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 9..20 score: 66.67 coord: 31..47 score: 70.59
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 8..71 e-value: 5.4E-37 score: 138.9
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 8..57 e-value: 1.8E-14 score: 53.7
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 8..65 score: 22.760784
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 8..65 e-value: 1.37437E-30 score: 103.891
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 8..66 e-value: 2.8E-27 score: 96.6
None	No IPR available	PANTHER	PTHR31677:SF116	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE	coord: 1..163
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 1..163
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 8..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024949.1	Lag0024949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity