Lag0024947 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024947
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 7197358 .. 7197777 (+)
RNA-Seq ExpressionLag0024947
SyntenyLag0024947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATCAGAATCAGCCATGGGAATGAACTCAAAGACGAAGGCCGATATCAGTAGCAGCCGGAGTTATCCTCTGAACTCCCTATCCTTCTCTGGCTACTTAACTTCAAAAGATCGGCAACCCAATTCAAGCGTGGCTGATCGCGATGATGGTGGTGGGAAGGTTTTGGGTTTGCCTCGGCCGAAACAGTCCCAAGTTGCTTGTAAAGCGCGACTTGATGGTTATGGTGGAGAGGGATCGTTGTTTGTTGTGAGAAACAACAGTATCAGAAGAGGAGGTCGAAGGATAAGGGATGAGGAAGATGAGTCGTCGGCGTGGTCTGGTTGGAGAGTTTTTCGGTCGTTTGTTTCGCCATGCAGGGAGTGCAGAGCCAGCAAGCCCACTGTCATCGAACCGCGCCCCGTTCAAAGGGCTTGA

mRNA sequence

ATGGCAAAATCAGAATCAGCCATGGGAATGAACTCAAAGACGAAGGCCGATATCAGTAGCAGCCGGAGTTATCCTCTGAACTCCCTATCCTTCTCTGGCTACTTAACTTCAAAAGATCGGCAACCCAATTCAAGCGTGGCTGATCGCGATGATGGTGGTGGGAAGGTTTTGGGTTTGCCTCGGCCGAAACAGTCCCAAGTTGCTTGTAAAGCGCGACTTGATGGTTATGGTGGAGAGGGATCGTTGTTTGTTGTGAGAAACAACAGTATCAGAAGAGGAGGTCGAAGGATAAGGGATGAGGAAGATGAGTCGTCGGCGTGGTCTGGTTGGAGAGTTTTTCGGTCGTTTGTTTCGCCATGCAGGGAGTGCAGAGCCAGCAAGCCCACTGTCATCGAACCGCGCCCCGTTCAAAGGGCTTGA

Coding sequence (CDS)

ATGGCAAAATCAGAATCAGCCATGGGAATGAACTCAAAGACGAAGGCCGATATCAGTAGCAGCCGGAGTTATCCTCTGAACTCCCTATCCTTCTCTGGCTACTTAACTTCAAAAGATCGGCAACCCAATTCAAGCGTGGCTGATCGCGATGATGGTGGTGGGAAGGTTTTGGGTTTGCCTCGGCCGAAACAGTCCCAAGTTGCTTGTAAAGCGCGACTTGATGGTTATGGTGGAGAGGGATCGTTGTTTGTTGTGAGAAACAACAGTATCAGAAGAGGAGGTCGAAGGATAAGGGATGAGGAAGATGAGTCGTCGGCGTGGTCTGGTTGGAGAGTTTTTCGGTCGTTTGTTTCGCCATGCAGGGAGTGCAGAGCCAGCAAGCCCACTGTCATCGAACCGCGCCCCGTTCAAAGGGCTTGA

Protein sequence

MAKSESAMGMNSKTKADISSSRSYPLNSLSFSGYLTSKDRQPNSSVADRDDGGGKVLGLPRPKQSQVACKARLDGYGGEGSLFVVRNNSIRRGGRRIRDEEDESSAWSGWRVFRSFVSPCRECRASKPTVIEPRPVQRA
Homology
BLAST of Lag0024947 vs. NCBI nr
Match: KAG6573282.1 (hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-32
Identity = 86/145 (59.31%), Postives = 102/145 (70.34%), Query Frame = 0

Query: 8   MGMNSKTKADISSSRSYPLNSLSFSGYLTSKDRQPN-------------SSVADRDDGGG 67
           M ++SKT  DISSS S    SLSFSG++TSKDRQP+             SSVA+   G  
Sbjct: 1   MAVHSKTNPDISSSSSSSNYSLSFSGFVTSKDRQPDKIIRTPDQRFEFGSSVANHYGGQS 60

Query: 68  KVLGLPRPKQSQVACKARLDGYGGEGSLFVVRNNSIRRGGRRIRDEEDESSAWSGWRVFR 127
            VL  PRP+Q+QV+CK +L     E    +VRN+SIRRGGRRIR+EE+ES+ WSGW VFR
Sbjct: 61  LVLPRPRPEQAQVSCKRQL-----ERDELMVRNHSIRRGGRRIREEEEEST-WSGWSVFR 120

Query: 128 SFVSPCRECRASKPTVIEPRPVQRA 140
           SFVSPCRECRASKP V+E RPVQRA
Sbjct: 121 SFVSPCRECRASKPAVVEARPVQRA 139

BLAST of Lag0024947 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_013090 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-20
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0

Query: 13  KTKADISSSRSYPLNSLSFSGYLTSKDRQPNSSVADRDDGGGKVLGLPRPKQSQVAC-KA 72
           + K  +SS+ S  LNSLSFSGYL SKDR  + S+   +    K+  +    +    C  +
Sbjct: 5   RKKPHMSSTTSTWLNSLSFSGYLNSKDRD-DPSLGSIETHDRKIKVVDHGFEFSPTCGGS 64

Query: 73  RLDGYGGEGSLFVVRNNSIRRGGRRIRDEEDESSAWSGWRVFRSFVSPCRECRASKPTVI 132
            +  YG   S ++VRNNSI+RG ++I +E+DE S WSGWR+F  FV PCRECRA KP+V+
Sbjct: 65  SVSDYGERSSAYIVRNNSIKRGSKKIWEEKDE-SRWSGWRIFWLFVLPCRECRARKPSVV 124

Query: 133 EPRPVQ 138
           +PRP+Q
Sbjct: 125 QPRPIQ 128

BLAST of Lag0024947 vs. NCBI nr
Match: XP_022139818.1 (uncharacterized protein LOC111010640 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-19
Identity = 77/159 (48.43%), Postives = 92/159 (57.86%), Query Frame = 0

Query: 1   MAKSESAMGMNSKTKA--DISS--SRSYPL-NSLSFSGYLTSKDRQPNSSVADRDDGGGK 60
           MA S S MG++ K  A  DISS  S SY   +SLSF+ YLT KDR+PNS    +    G 
Sbjct: 1   MANSNSGMGIHPKNPAQPDISSSGSSSYSFSSSLSFAAYLTCKDREPNSGGLIKTGDQGF 60

Query: 61  VLGLPRPKQSQVACKARLDGYGGEGS------------LFVVRNNSIRRGGRRIRDEEDE 120
             G        + C    D  GG GS              VVRNNSIRRGGRRI+DEE+E
Sbjct: 61  EFG-------PICCD---DHDGGSGSGRRRIRDDDGQRWLVVRNNSIRRGGRRIKDEEEE 120

Query: 121 SSAWSGW-RVFRSFVSPCRECRASKPTVI---EPRPVQR 139
           SS+ + W  VFRSFVSPCRECRASKP+ +   +  P+QR
Sbjct: 121 SSSSTSWSSVFRSFVSPCRECRASKPSAVIEAQAHPIQR 149

BLAST of Lag0024947 vs. NCBI nr
Match: KAA0057006.1 (hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK26433.1 hypothetical protein E5676_scaffold861G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-18
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 0

Query: 8   MGMNSKTKADISSSRSYPLNSLSFSGYLTSKDR-QPNSSVADRDDGGGKVL------GLP 67
           MG+++K     S++ S  +NSLSFSGYL SKDR +P+    +  D   KV+      G P
Sbjct: 1   MGIHTKKPHMSSTTTSTWVNSLSFSGYLNSKDREEPSLGSIETQDRKIKVVNHGFEFGGP 60

Query: 68  RPKQSQVACKARLDGYGGEGSLFVVRNNSIRRGGRRIRDEEDESSAWSGWRVFRSFVSPC 127
             + S V+     D  G   S ++VRNNSIRRG ++IR+E++ES     WRV  SFV PC
Sbjct: 61  TCRGSSVS-----DYIGERSSPYIVRNNSIRRGSKKIREEKEESR----WRVVWSFVLPC 120

Query: 128 RECRASKPTVIEPRPVQ 138
           RECRASKP V++PRP+Q
Sbjct: 121 RECRASKPNVVQPRPIQ 128

BLAST of Lag0024947 vs. NCBI nr
Match: TYI64440.1 (hypothetical protein E1A91_D09G088900v1 [Gossypium mustelinum])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 0

Query: 10  MNSKTKADISSSRSYPLNSLSF-----SGYLTSKDRQPNSS--VADRDDGGGKVLGLPRP 69
           M+  T    SSS  Y L+  S        + ++KD+ P+ S   +  D GGG +L L   
Sbjct: 1   MDVATDHSNSSSLDYSLSFTSLVCIDPPNHQSNKDQSPHDSNKSSRPDSGGGHLLPL--- 60

Query: 70  KQSQVACKARLDGYGGEGSLFVVRNNSIRRGGRRIRDEEDESSAWSGWRVFRSFVSPCRE 129
              +   K+R    GG+G   +  N  +R  G+R   E  +S  W G ++ RSFVSPCRE
Sbjct: 61  ---EFLLKSRPPSLGGDGERKL--NGEVRNQGKR---ETMDSKPWFGRKLLRSFVSPCRE 119

Query: 130 CRASKPTVIE 133
           CR  KP+ ++
Sbjct: 121 CRVVKPSTVK 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6573282.12.2e-3259.31hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN64696.15.7e-2046.83hypothetical protein Csa_013090 [Cucumis sativus][more]
XP_022139818.12.8e-1948.43uncharacterized protein LOC111010640 [Momordica charantia][more]
KAA0057006.17.0e-1846.72hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK2643... [more]
TYI64440.15.2e-0533.85hypothetical protein E1A91_D09G088900v1 [Gossypium mustelinum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024947.1Lag0024947.1mRNA