Lag0024906 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024906
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr10: 6903506 .. 6904111 (+)
RNA-Seq Expression	Lag0024906
Synteny	Lag0024906

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGGAAATCAGAAGGTCTCCTAGCAACTGCCAAAAGGAGAGGTTCTGCATTTGATATCCTCCTCAAACTATATGCTAAAAGTGGAAAGAAAGACGAGTTACACCGTATCTGGAATCTCTACAAGAAGGAGAAAGTCTACAACAAAGGTTATATCAGCATGATAAGATCACTTTTGATATTGGATGACATTGAAGCTGCCGAGCATATTTTCAAGGAATGGGAGACCCGGAAACTGTCCTACGACTTGCGAATTCCAAACATGTTGGTCGAGGCATATTGCAGAGAAGGTTTAATGGAGAAGGCTGAAGCCTTCATAAACGAGACAATGACTGGAAGAGGCAAGTTTTCTGTCCATTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCGCAGGCAGTTGACACACTGAAAAAAGCAGCCACTTTATGCCCATCGGAATTAAACCACTTCAAGGAAATTTTGGCAACTTTTTTGGATGGCAAGCAAGATGTGAAAGAAGCTGAGAAAGTCGTTGATTTGTTGAGGGCTGGATCCAACTCTCTTTTTGCTCGTGATGTATTGATGGAGTGTGATGACGAATGTACATAA

mRNA sequence

ATGCTGAGGAAATCAGAAGGTCTCCTAGCAACTGCCAAAAGGAGAGGTTCTGCATTTGATATCCTCCTCAAACTATATGCTAAAAGTGGAAAGAAAGACGAGTTACACCGTATCTGGAATCTCTACAAGAAGGAGAAAGTCTACAACAAAGGTTATATCAGCATGATAAGATCACTTTTGATATTGGATGACATTGAAGCTGCCGAGCATATTTTCAAGGAATGGGAGACCCGGAAACTGTCCTACGACTTGCGAATTCCAAACATGTTGGTCGAGGCATATTGCAGAGAAGGTTTAATGGAGAAGGCTGAAGCCTTCATAAACGAGACAATGACTGGAAGAGGCAAGTTTTCTGTCCATTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCGCAGGCAGTTGACACACTGAAAAAAGCAGCCACTTTATGCCCATCGGAATTAAACCACTTCAAGGAAATTTTGGCAACTTTTTTGGATGGCAAGCAAGATGTGAAAGAAGCTGAGAAAGTCGTTGATTTGTTGAGGGCTGGATCCAACTCTCTTTTTGCTCGTGATGTATTGATGGAGTGTGATGACGAATGTACATAA

Coding sequence (CDS)

ATGCTGAGGAAATCAGAAGGTCTCCTAGCAACTGCCAAAAGGAGAGGTTCTGCATTTGATATCCTCCTCAAACTATATGCTAAAAGTGGAAAGAAAGACGAGTTACACCGTATCTGGAATCTCTACAAGAAGGAGAAAGTCTACAACAAAGGTTATATCAGCATGATAAGATCACTTTTGATATTGGATGACATTGAAGCTGCCGAGCATATTTTCAAGGAATGGGAGACCCGGAAACTGTCCTACGACTTGCGAATTCCAAACATGTTGGTCGAGGCATATTGCAGAGAAGGTTTAATGGAGAAGGCTGAAGCCTTCATAAACGAGACAATGACTGGAAGAGGCAAGTTTTCTGTCCATTCGTGGTGCTATTTAGCGAGTGGATATCTTCAGAAAGATCAACTACCGCAGGCAGTTGACACACTGAAAAAAGCAGCCACTTTATGCCCATCGGAATTAAACCACTTCAAGGAAATTTTGGCAACTTTTTTGGATGGCAAGCAAGATGTGAAAGAAGCTGAGAAAGTCGTTGATTTGTTGAGGGCTGGATCCAACTCTCTTTTTGCTCGTGATGTATTGATGGAGTGTGATGACGAATGTACATAA

Protein sequence

MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLLILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVHSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLLRAGSNSLFARDVLMECDDECT

Homology

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BLAST of Lag0024906 vs. NCBI nr
Match: XP_022140106.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momordica charantia])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 167/200 (83.50%), Postives = 182/200 (91.00%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           MLRKSE LLATAKRRGSAFDILLKLYA+SGKKDELHRIW LYKKEKVYNKGY+SM+RSLL
Sbjct: 258 MLRKSEALLATAKRRGSAFDILLKLYAESGKKDELHRIWKLYKKEKVYNKGYMSMMRSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDIEAAEHIFK+WET KLS DLRIPNML+EAYCR GLMEKAEA IN+ +TG+ KFSVH
Sbjct: 318 ILDDIEAAEHIFKDWETWKLSNDLRIPNMLIEAYCRRGLMEKAEALINKAVTGKSKFSVH 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLA+ Y+QKDQL   V+ LKKAATLCP ELNHFKEILATFL+GKQDVKEAEKVV LL
Sbjct: 378 SWCYLANAYIQKDQLQHTVEALKKAATLCPPELNHFKEILATFLEGKQDVKEAEKVVGLL 437

Query: 181 RAGSNSLFARDVLMECDDEC 201
           RA +NSLFA DVL++C DEC
Sbjct: 438 RAEANSLFAHDVLIDCGDEC 457

[Close]

BLAST of Lag0024906 vs. NCBI nr
Match: KAA0056984.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 5.6e-77
Identity = 146/197 (74.11%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEG LAT K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMIRSLL
Sbjct: 764 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 823

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI  AE I+KEWET+KLSYD+RIPN+LV+AYCR GL+EKAE  +NE +  RGKFSV 
Sbjct: 824 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIEKAEELVNEIVNVRGKFSVE 883

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLKKAA+LCPSELN+ KEILA F DGKQDV+EAEKVV+LL
Sbjct: 884 SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQDVEEAEKVVNLL 943

Query: 181 RAGSNSLFAR--DVLME 196
           R   N   AR  D+L+E
Sbjct: 944 REKDNLNPARAHDILVE 960

[Close]

BLAST of Lag0024906 vs. NCBI nr
Match: XP_008442434.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo] >TYK26412.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 298.1 bits (762), Expect = 5.6e-77
Identity = 146/197 (74.11%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEG LAT K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMIRSLL
Sbjct: 258 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI  AE I+KEWET+KLSYD+RIPN+LV+AYCR GL+EKAE  +NE +  RGKFSV 
Sbjct: 318 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIEKAEELVNEIVNVRGKFSVE 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLKKAA+LCPSELN+ KEILA F DGKQDV+EAEKVV+LL
Sbjct: 378 SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQDVEEAEKVVNLL 437

Query: 181 RAGSNSLFAR--DVLME 196
           R   N   AR  D+L+E
Sbjct: 438 REKDNLNPARAHDILVE 454

[Close]

BLAST of Lag0024906 vs. NCBI nr
Match: XP_011653157.2 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X1 [Cucumis sativus] >KAE8652711.1 hypothetical protein Csa_013210 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 5.2e-75
Identity = 141/190 (74.21%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEGLLA  K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMI SLL
Sbjct: 258 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNKGFISMITSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI+ AE I+KEWETRKLSYDLRIPN+LV+AYCR GLMEKAE  +NE +  R KFSV 
Sbjct: 318 ILDDIKGAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVE 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLK AA++CPS LN+ KEILA FLDGKQDV+E EKVV+LL
Sbjct: 378 SWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAFLDGKQDVEETEKVVNLL 437

Query: 181 RAGSNSLFAR 191
           R   +S  AR
Sbjct: 438 REKDDSHPAR 447

[Close]

BLAST of Lag0024906 vs. NCBI nr
Match: XP_031744923.1 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X2 [Cucumis sativus] >XP_031744924.1 pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 5.2e-75
Identity = 141/190 (74.21%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEGLLA  K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMI SLL
Sbjct: 172 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNKGFISMITSLL 231

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI+ AE I+KEWETRKLSYDLRIPN+LV+AYCR GLMEKAE  +NE +  R KFSV 
Sbjct: 232 ILDDIKGAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVE 291

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLK AA++CPS LN+ KEILA FLDGKQDV+E EKVV+LL
Sbjct: 292 SWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAFLDGKQDVEETEKVVNLL 351

Query: 181 RAGSNSLFAR 191
           R   +S  AR
Sbjct: 352 REKDDSHPAR 361

[Close]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot
Match: Q9SKU6 (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 68/184 (36.96%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK-EKVYNKGYISMIRSL 60
           MLRKSE ++  A++R  A+++L+  Y  +GKK+E++R+W+LYK+ +  YN GYIS+I +L
Sbjct: 267 MLRKSEQMV-NAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISAL 326

Query: 61  LILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSV 120
           L +DDIE  E I +EWE     +D+RIP++L+  YC++G+MEKAE  +N  +        
Sbjct: 327 LKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDT 386

Query: 121 HSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILAT---FLDGKQDVKEAEKV 180
            +W  LA GY    ++ +AV+  K+A  +        + +L +   +L+G++D++   K+
Sbjct: 387 STWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKI 446

[Close]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot
Match: O22714 (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX=3702 GN=At1g60770 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-21
Identity = 54/189 (28.57%), Postives = 105/189 (55.56%), Query Frame = 0


Query: 9   LATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK--EKVYNKGYISMIRSLLILDDIE 68
           +   +R  +A+  L+ LY + GK  E++RIW   +    K  N  Y++MI+ L+ L+D+ 
Sbjct: 257 MKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLP 316

Query: 69  AAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVHSWCYLA 128
            AE +FKEW+    +YD+RI N+L+ AY +EGL++KA     +     GK +  +W    
Sbjct: 317 GAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376

Query: 129 SGYLQKDQLPQAVDTLKKAATLCPSELNHF------KEILATFLDGKQDVKEAEKVVDLL 188
             Y++   + +A++ + KA ++   +   +         L ++ + K+DV  AE ++++L
Sbjct: 377 DYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEIL 436

Query: 189 RAGSNSLFA 190
           + G++++ A
Sbjct: 437 KNGTDNIGA 445

[Close]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot
Match: Q8LPS6 (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 63/186 (33.87%), Postives = 99/186 (53.23%), Query Frame = 0


Query: 2   LRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK--EKVYNKGYISMIRSL 61
           LRK E  +    R    +  LL LY   G K EL+R+W++YK     + N GY +++ SL
Sbjct: 298 LRKVEARITGRNR--IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSL 357

Query: 62  LILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSV 121
           + + DIE AE +++EW   K SYD RIPN+L+ AY +   +E AE   +  +   GK S 
Sbjct: 358 VRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSS 417

Query: 122 HSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILAT----FLDGKQDVKEAEK 181
            +W  LA G+ +K  + +A+  L+ A +   S     K ++ +      + + DV   E 
Sbjct: 418 STWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEA 477

[Close]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot
Match: Q9C7F1 (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana OX=3702 GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-18
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKE--KVYNKGYISMIRS 60
           MLR +E L+   K   SA+D L+KLY ++G ++E+ R+W LYK +  +  N GY ++IRS
Sbjct: 266 MLRLTEQLV-DQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRS 325

Query: 61  LLILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFIN 109
           LL +DDI  AE I+K WE+  L +D RIP ML   Y   G+ EKAE  +N
Sbjct: 326 LLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMN 374

[Close]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot
Match: Q84JR3 (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-17
Identity = 51/148 (34.46%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK--EKVYNKGYISMIRS 60
           +L+ SE  L   K+ G  ++ L+ LYA+ GKK E+ R+W+L K   ++  N+ Y+++++S
Sbjct: 254 LLKMSENRL--EKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQS 313

Query: 61  LLILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFS 120
           L+ +D +  AE +  EW++    YD R+PN ++  Y  + + EKAEA + E +  RGK +
Sbjct: 314 LVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAML-EDLARRGKAT 373

Query: 121 V-HSWCYLASGYLQKDQLPQAVDTLKKA 146
              SW  +A+ Y +K  L  A   +K A
Sbjct: 374 TPESWELVATAYAEKGTLENAFKCMKTA 398

[Close]

BLAST of Lag0024906 vs. ExPASy TrEMBL
Match: A0A6J1CET9 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111010842 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.4e-91
Identity = 167/200 (83.50%), Postives = 182/200 (91.00%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           MLRKSE LLATAKRRGSAFDILLKLYA+SGKKDELHRIW LYKKEKVYNKGY+SM+RSLL
Sbjct: 258 MLRKSEALLATAKRRGSAFDILLKLYAESGKKDELHRIWKLYKKEKVYNKGYMSMMRSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDIEAAEHIFK+WET KLS DLRIPNML+EAYCR GLMEKAEA IN+ +TG+ KFSVH
Sbjct: 318 ILDDIEAAEHIFKDWETWKLSNDLRIPNMLIEAYCRRGLMEKAEALINKAVTGKSKFSVH 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLA+ Y+QKDQL   V+ LKKAATLCP ELNHFKEILATFL+GKQDVKEAEKVV LL
Sbjct: 378 SWCYLANAYIQKDQLQHTVEALKKAATLCPPELNHFKEILATFLEGKQDVKEAEKVVGLL 437

Query: 181 RAGSNSLFARDVLMECDDEC 201
           RA +NSLFA DVL++C DEC
Sbjct: 438 RAEANSLFAHDVLIDCGDEC 457

[Close]

BLAST of Lag0024906 vs. ExPASy TrEMBL
Match: A0A5D3DSH1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00760 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 146/197 (74.11%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEG LAT K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMIRSLL
Sbjct: 258 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI  AE I+KEWET+KLSYD+RIPN+LV+AYCR GL+EKAE  +NE +  RGKFSV 
Sbjct: 318 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIEKAEELVNEIVNVRGKFSVE 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLKKAA+LCPSELN+ KEILA F DGKQDV+EAEKVV+LL
Sbjct: 378 SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQDVEEAEKVVNLL 437

Query: 181 RAGSNSLFAR--DVLME 196
           R   N   AR  D+L+E
Sbjct: 438 REKDNLNPARAHDILVE 454

[Close]

BLAST of Lag0024906 vs. ExPASy TrEMBL
Match: A0A5A7UP59 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001650 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 146/197 (74.11%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEG LAT K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMIRSLL
Sbjct: 764 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 823

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI  AE I+KEWET+KLSYD+RIPN+LV+AYCR GL+EKAE  +NE +  RGKFSV 
Sbjct: 824 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIEKAEELVNEIVNVRGKFSVE 883

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLKKAA+LCPSELN+ KEILA F DGKQDV+EAEKVV+LL
Sbjct: 884 SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQDVEEAEKVVNLL 943

Query: 181 RAGSNSLFAR--DVLME 196
           R   N   AR  D+L+E
Sbjct: 944 REKDNLNPARAHDILVE 960

[Close]

BLAST of Lag0024906 vs. ExPASy TrEMBL
Match: A0A1S3B572 (pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486303 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 146/197 (74.11%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEG LAT K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMIRSLL
Sbjct: 258 MLKKSEGRLATDKKKGHAFNVYLKLYARNGKKDEVHRIWNLYKKEKIFNKGFISMIRSLL 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           ILDDI  AE I+KEWET+KLSYD+RIPN+LV+AYCR GL+EKAE  +NE +  RGKFSV 
Sbjct: 318 ILDDIRGAEDIYKEWETQKLSYDVRIPNLLVDAYCRAGLIEKAEELVNEIVNVRGKFSVE 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLKKAA+LCPSELN+ KEILA F DGKQDV+EAEKVV+LL
Sbjct: 378 SWCYLASGYLQKDQLPQAVETLKKAASLCPSELNYVKEILAAFSDGKQDVEEAEKVVNLL 437

Query: 181 RAGSNSLFAR--DVLME 196
           R   N   AR  D+L+E
Sbjct: 438 REKDNLNPARAHDILVE 454

[Close]

BLAST of Lag0024906 vs. ExPASy TrEMBL
Match: A0A0A0LV44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 9.7e-75
Identity = 139/190 (73.16%), Postives = 164/190 (86.32%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKEKVYNKGYISMIRSLL 60
           ML+KSEGLLA  K++G AF++ LKLYA++GKKDE+HRIWNLYKKEK++NKG+ISMI SL 
Sbjct: 258 MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHRIWNLYKKEKIFNKGFISMITSLF 317

Query: 61  ILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVH 120
           +LDDI+ AE I+KEWETRKLSYDLRIPN+LV+AYCR GLMEKAE  +NE +  R KFSV 
Sbjct: 318 VLDDIKGAERIYKEWETRKLSYDLRIPNLLVDAYCRAGLMEKAEVLLNEMVIVRRKFSVE 377

Query: 121 SWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILATFLDGKQDVKEAEKVVDLL 180
           SWCYLASGYLQKDQLPQAV+TLK AA++CPS LN+ KEILA FLDGKQDV+E EKVV+LL
Sbjct: 378 SWCYLASGYLQKDQLPQAVETLKLAASVCPSRLNYVKEILAAFLDGKQDVEETEKVVNLL 437

Query: 181 RAGSNSLFAR 191
           R   +S  AR
Sbjct: 438 REKDDSHPAR 447

[Close]

BLAST of Lag0024906 vs. TAIR 10
Match: AT2G20710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 68/184 (36.96%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK-EKVYNKGYISMIRSL 60
           MLRKSE ++  A++R  A+++L+  Y  +GKK+E++R+W+LYK+ +  YN GYIS+I +L
Sbjct: 267 MLRKSEQMV-NAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISAL 326

Query: 61  LILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSV 120
           L +DDIE  E I +EWE     +D+RIP++L+  YC++G+MEKAE  +N  +        
Sbjct: 327 LKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDT 386

Query: 121 HSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILAT---FLDGKQDVKEAEKV 180
            +W  LA GY    ++ +AV+  K+A  +        + +L +   +L+G++D++   K+
Sbjct: 387 STWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKI 446

[Close]

BLAST of Lag0024906 vs. TAIR 10
Match: AT2G20710.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 68/184 (36.96%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK-EKVYNKGYISMIRSL 60
           MLRKSE ++  A++R  A+++L+  Y  +GKK+E++R+W+LYK+ +  YN GYIS+I +L
Sbjct: 172 MLRKSEQMV-NAQKRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFYNTGYISVISAL 231

Query: 61  LILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSV 120
           L +DDIE  E I +EWE     +D+RIP++L+  YC++G+MEKAE  +N  +        
Sbjct: 232 LKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDT 291

Query: 121 HSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILAT---FLDGKQDVKEAEKV 180
            +W  LA GY    ++ +AV+  K+A  +        + +L +   +L+G++D++   K+
Sbjct: 292 STWERLALGYKMAGKMEKAVEKWKRAIEVSKPGWRPHQVVLMSCVDYLEGQRDMEGLRKI 351

[Close]

BLAST of Lag0024906 vs. TAIR 10
Match: AT1G60770.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-22
Identity = 54/189 (28.57%), Postives = 105/189 (55.56%), Query Frame = 0


Query: 9   LATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK--EKVYNKGYISMIRSLLILDDIE 68
           +   +R  +A+  L+ LY + GK  E++RIW   +    K  N  Y++MI+ L+ L+D+ 
Sbjct: 257 MKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLP 316

Query: 69  AAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSVHSWCYLA 128
            AE +FKEW+    +YD+RI N+L+ AY +EGL++KA     +     GK +  +W    
Sbjct: 317 GAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFM 376

Query: 129 SGYLQKDQLPQAVDTLKKAATLCPSELNHF------KEILATFLDGKQDVKEAEKVVDLL 188
             Y++   + +A++ + KA ++   +   +         L ++ + K+DV  AE ++++L
Sbjct: 377 DYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEIL 436

Query: 189 RAGSNSLFA 190
           + G++++ A
Sbjct: 437 KNGTDNIGA 445

[Close]

BLAST of Lag0024906 vs. TAIR 10
Match: AT1G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 63/186 (33.87%), Postives = 99/186 (53.23%), Query Frame = 0


Query: 2   LRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKK--EKVYNKGYISMIRSL 61
           LRK E  +    R    +  LL LY   G K EL+R+W++YK     + N GY +++ SL
Sbjct: 298 LRKVEARITGRNR--IPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSL 357

Query: 62  LILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFINETMTGRGKFSV 121
           + + DIE AE +++EW   K SYD RIPN+L+ AY +   +E AE   +  +   GK S 
Sbjct: 358 VRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSS 417

Query: 122 HSWCYLASGYLQKDQLPQAVDTLKKAATLCPSELNHFKEILAT----FLDGKQDVKEAEK 181
            +W  LA G+ +K  + +A+  L+ A +   S     K ++ +      + + DV   E 
Sbjct: 418 STWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEA 477

[Close]

BLAST of Lag0024906 vs. TAIR 10
Match: AT1G28020.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 1   MLRKSEGLLATAKRRGSAFDILLKLYAKSGKKDELHRIWNLYKKE--KVYNKGYISMIRS 60
           MLR +E L+   K   SA+D L+KLY ++G ++E+ R+W LYK +  +  N GY ++IRS
Sbjct: 266 MLRLTEQLV-DQKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRS 325

Query: 61  LLILDDIEAAEHIFKEWETRKLSYDLRIPNMLVEAYCREGLMEKAEAFIN 109
           LL +DDI  AE I+K WE+  L +D RIP ML   Y   G+ EKAE  +N
Sbjct: 326 LLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMN 374

The following BLAST results are available for this feature:

BLAST of Lag0024906 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140106.1	1.5e-90	83.50	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Momor...	[more]
KAA0056984.1	5.6e-77	74.11	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008442434.1	5.6e-77	74.11	PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-...	[more]
XP_011653157.2	5.2e-75	74.21	pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X1 ...	[more]
XP_031744923.1	5.2e-75	74.21	pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X2 ...	[more]

BLAST of Lag0024906 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKU6	1.6e-29	36.96	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidop...	[more]
O22714	3.5e-21	28.57	Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX...	[more]
Q8LPS6	2.9e-20	33.87	Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX...	[more]
Q9C7F1	4.7e-18	46.36	Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis th...	[more]
Q84JR3	4.0e-17	34.46	Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidop...	[more]

BLAST of Lag0024906 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CET9	7.4e-91	83.50	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Mom...	[more]
A0A5D3DSH1	2.7e-77	74.11	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UP59	2.7e-77	74.11	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B572	2.7e-77	74.11	pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like OS=Cuc...	[more]
A0A0A0LV44	9.7e-75	73.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073790 PE=4 SV=1	[more]

BLAST of Lag0024906 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20710.1	1.1e-30	36.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G20710.2	1.1e-30	36.96	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G60770.1	2.5e-22	28.57	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G02150.1	2.1e-21	33.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G28020.1	3.3e-19	46.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 88..109 e-value: 0.0026 score: 15.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 52..78 e-value: 1.3 score: 9.4 coord: 88..109 e-value: 0.0054 score: 16.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..193 e-value: 6.7E-17 score: 63.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 52..164
None	No IPR available	PANTHER	PTHR45717	OS12G0527900 PROTEIN	coord: 1..182
None	No IPR available	PANTHER	PTHR45717:SF28	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..182
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 119..152 score: 8.5554

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024906.1	Lag0024906.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding