Lag0024727 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024727
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function, DUF584
Locationchr10: 5258798 .. 5259343 (-)
RNA-Seq ExpressionLag0024727
SyntenyLag0024727
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATTGGAGCTCTGCACTGAGAAAAAGCTATGGCTTCAGTGAAGATTTGGAAGAAGAAGATGTTTGGAATTCTGTTGAGGGTAGTGAAGATTCTTCAAATTTCATCACGAGGAAGTCCTCTGATTATTACTACTCTTCTTCTTCATCTTCTTCTTCGTCTTCACCTTCTTCTTCAACTTGGCGGCTTCCATCTGCTCCAAAAAAGATCCCGAAATCCATTTCGACAAGAACACACGAAACTCAGATGGCGACTAATCGATCCTCTGCTCCGGTGGACATTCCCGATTGGTCCAAAATCTACGGCAAGATGGGCTCGTCGGCCGGCGAACGTTCCGGCGGAAAACCCGACGACAGAGACCAAGAAGACATGGACGGTGAAGAAGACGACATGGTGCCTCCTCATGAATGGATTGCTCAGAAATTGGCGAGAAGCCGAATTTCTTCTTTCTCTGTTTGCGAAGGGGTTGGAAGAACTCTCAAAGGAAGAGATTTAAGCAAAGTTCGAAACGCCATTTTGACAAAGACTGGGTTTTTAGAGTGA

mRNA sequence

ATGGCGAATTGGAGCTCTGCACTGAGAAAAAGCTATGGCTTCAGTGAAGATTTGGAAGAAGAAGATGTTTGGAATTCTGTTGAGGGTAGTGAAGATTCTTCAAATTTCATCACGAGGAAGTCCTCTGATTATTACTACTCTTCTTCTTCATCTTCTTCTTCGTCTTCACCTTCTTCTTCAACTTGGCGGCTTCCATCTGCTCCAAAAAAGATCCCGAAATCCATTTCGACAAGAACACACGAAACTCAGATGGCGACTAATCGATCCTCTGCTCCGGTGGACATTCCCGATTGGTCCAAAATCTACGGCAAGATGGGCTCGTCGGCCGGCGAACGTTCCGGCGGAAAACCCGACGACAGAGACCAAGAAGACATGGACGGTGAAGAAGACGACATGGTGCCTCCTCATGAATGGATTGCTCAGAAATTGGCGAGAAGCCGAATTTCTTCTTTCTCTGTTTGCGAAGGGGTTGGAAGAACTCTCAAAGGAAGAGATTTAAGCAAAGTTCGAAACGCCATTTTGACAAAGACTGGGTTTTTAGAGTGA

Coding sequence (CDS)

ATGGCGAATTGGAGCTCTGCACTGAGAAAAAGCTATGGCTTCAGTGAAGATTTGGAAGAAGAAGATGTTTGGAATTCTGTTGAGGGTAGTGAAGATTCTTCAAATTTCATCACGAGGAAGTCCTCTGATTATTACTACTCTTCTTCTTCATCTTCTTCTTCGTCTTCACCTTCTTCTTCAACTTGGCGGCTTCCATCTGCTCCAAAAAAGATCCCGAAATCCATTTCGACAAGAACACACGAAACTCAGATGGCGACTAATCGATCCTCTGCTCCGGTGGACATTCCCGATTGGTCCAAAATCTACGGCAAGATGGGCTCGTCGGCCGGCGAACGTTCCGGCGGAAAACCCGACGACAGAGACCAAGAAGACATGGACGGTGAAGAAGACGACATGGTGCCTCCTCATGAATGGATTGCTCAGAAATTGGCGAGAAGCCGAATTTCTTCTTTCTCTGTTTGCGAAGGGGTTGGAAGAACTCTCAAAGGAAGAGATTTAAGCAAAGTTCGAAACGCCATTTTGACAAAGACTGGGTTTTTAGAGTGA

Protein sequence

MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSDYYYSSSSSSSSSSPSSSTWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDDRDQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFLE
Homology
BLAST of Lag0024727 vs. NCBI nr
Match: XP_038894875.1 (uncharacterized protein LOC120083273 [Benincasa hispida])

HSP 1 Score: 298.9 bits (764), Expect = 3.0e-77
Identity = 162/182 (89.01%), Postives = 169/182 (92.86%), Query Frame = 0

Query: 1   MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSD-YYYSSSSSSSSSSPSS 60
           MANWSSALRK+YGFSEDLEEEDVWNSV+G EDSSNFITR S+D YY SSSSSSSSSS SS
Sbjct: 1   MANWSSALRKNYGFSEDLEEEDVWNSVKGKEDSSNFITRDSNDCYYSSSSSSSSSSSSSS 60

Query: 61  STWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDD 120
           STWRLPSAPK IPKSISTRTHETQMA NRSSAPVDIPDWSKIYGKMGSS+ ++S    D 
Sbjct: 61  STWRLPSAPKMIPKSISTRTHETQMANNRSSAPVDIPDWSKIYGKMGSSSCDKS----DG 120

Query: 121 RDQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF 180
           RDQED+DGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF
Sbjct: 121 RDQEDIDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF 178

Query: 181 LE 182
           LE
Sbjct: 181 LE 178

BLAST of Lag0024727 vs. NCBI nr
Match: XP_008441031.1 (PREDICTED: uncharacterized protein LOC103485264 [Cucumis melo] >ADN34054.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0056852.1 zinc-regulated protein 8 [Cucumis melo var. makuwa] >TYJ99355.1 zinc-regulated protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-75
Identity = 160/181 (88.40%), Postives = 166/181 (91.71%), Query Frame = 0

Query: 1   MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSDYYYSSSSSSSSSSPSSS 60
           MANWSSALRK+YGFS+DLEEEDVWNSVEG EDSSNFI RKS DYYYSSSSSSSSS  SSS
Sbjct: 1   MANWSSALRKNYGFSDDLEEEDVWNSVEGKEDSSNFINRKSHDYYYSSSSSSSSS--SSS 60

Query: 61  TWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDDR 120
           TWRLP+APK IPKSISTRTHETQMA NRSSAPVDIPDWSKIYGKMGSS+   +G K D R
Sbjct: 61  TWRLPTAPKMIPKSISTRTHETQMANNRSSAPVDIPDWSKIYGKMGSSS---AGEKTDVR 120

Query: 121 DQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 180
           DQE  DGE+DDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL
Sbjct: 121 DQE--DGEDDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 174

Query: 181 E 182
           E
Sbjct: 181 E 174

BLAST of Lag0024727 vs. NCBI nr
Match: XP_004153812.1 (uncharacterized protein LOC101208118 [Cucumis sativus] >KGN64516.1 hypothetical protein Csa_014243 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-75
Identity = 160/182 (87.91%), Postives = 168/182 (92.31%), Query Frame = 0

Query: 1   MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSDYYYSSSSSSSSS-SPSS 60
           MANWSSALRK+YGFS+DLEEEDVWNSVEG EDSSNFI+RKSSDYYYSSSSSSSSS S SS
Sbjct: 1   MANWSSALRKNYGFSDDLEEEDVWNSVEGKEDSSNFISRKSSDYYYSSSSSSSSSLSSSS 60

Query: 61  STWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDD 120
           STWRLP+APK IPKSISTR HETQMA NRSSAPVDIPDWSKIYGKMGSS+   +G K D 
Sbjct: 61  STWRLPTAPKMIPKSISTRAHETQMANNRSSAPVDIPDWSKIYGKMGSSS---TGDKDDV 120

Query: 121 RDQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF 180
           RDQE  DGE++DMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF
Sbjct: 121 RDQE--DGEDEDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGF 177

Query: 181 LE 182
           LE
Sbjct: 181 LE 177

BLAST of Lag0024727 vs. NCBI nr
Match: XP_022924226.1 (uncharacterized protein LOC111431737 [Cucurbita moschata] >KAG7019691.1 hypothetical protein SDJN02_18654 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 146/181 (80.66%), Postives = 154/181 (85.08%), Query Frame = 0

Query: 1   MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSDYYYSSSSSSSSSSPSSS 60
           MANW+ ALRKSYGFSEDLEEEDVW SVEG EDSS+F+TRKS+DY                
Sbjct: 1   MANWNGALRKSYGFSEDLEEEDVWKSVEGKEDSSSFVTRKSTDY---------------- 60

Query: 61  TWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDDR 120
             RLP+APK IPKSI+TRTHETQM TNRSSAPVDIPDW+KIYGKMGSS GE SG KPDDR
Sbjct: 61  --RLPTAPKMIPKSIATRTHETQMRTNRSSAPVDIPDWAKIYGKMGSSDGELSGQKPDDR 120

Query: 121 DQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 180
           DQED+ GEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL
Sbjct: 121 DQEDIAGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 163

Query: 181 E 182
           E
Sbjct: 181 E 163

BLAST of Lag0024727 vs. NCBI nr
Match: KAG6584092.1 (hypothetical protein SDJN03_20024, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.5 bits (711), Expect = 4.1e-71
Identity = 145/181 (80.11%), Postives = 154/181 (85.08%), Query Frame = 0

Query: 1   MANWSSALRKSYGFSEDLEEEDVWNSVEGSEDSSNFITRKSSDYYYSSSSSSSSSSPSSS 60
           MANW+ ALRKSYGFSEDLEEEDVW SVEG EDSS+F+TR+S+DY                
Sbjct: 26  MANWNGALRKSYGFSEDLEEEDVWKSVEGKEDSSSFVTRRSTDY---------------- 85

Query: 61  TWRLPSAPKKIPKSISTRTHETQMATNRSSAPVDIPDWSKIYGKMGSSAGERSGGKPDDR 120
             RLP+APK IPKSI+TRTHETQM TNRSSAPVDIPDW+KIYGKMGSS GE SG KPDDR
Sbjct: 86  --RLPTAPKMIPKSIATRTHETQMRTNRSSAPVDIPDWAKIYGKMGSSDGELSGQKPDDR 145

Query: 121 DQEDMDGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 180
           DQED+ GEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL
Sbjct: 146 DQEDIAGEEDDMVPPHEWIAQKLARSRISSFSVCEGVGRTLKGRDLSKVRNAILTKTGFL 188

Query: 181 E 182
           E
Sbjct: 206 E 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038894875.13.0e-7789.01uncharacterized protein LOC120083273 [Benincasa hispida][more]
XP_008441031.12.1e-7588.40PREDICTED: uncharacterized protein LOC103485264 [Cucumis melo] >ADN34054.1 hypot... [more]
XP_004153812.12.1e-7587.91uncharacterized protein LOC101208118 [Cucumis sativus] >KGN64516.1 hypothetical ... [more]
XP_022924226.11.9e-7180.66uncharacterized protein LOC111431737 [Cucurbita moschata] >KAG7019691.1 hypothet... [more]
KAG6584092.14.1e-7180.11hypothetical protein SDJN03_20024, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 16..181
e-value: 9.5E-47
score: 159.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..65
NoneNo IPR availablePANTHERPTHR33083:SF55OS07G0512250 PROTEINcoord: 15..181
NoneNo IPR availablePANTHERPTHR33083EXPRESSED PROTEINcoord: 15..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024727.1Lag0024727.1mRNA