Lag0024689 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024689
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr10: 4982961 .. 4985544 (-)
RNA-Seq Expression	Lag0024689
Synteny	Lag0024689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGGTCGAGCATTCTCCTCGACCGAGGCTGAGGAGGAAAAAATGGGGTCGGGGAGGGCCCCGACCCTTCTACCGTTTGCCTTGGGTCGCTCTTCACCAATCTGGGTCCGACAATTCCAGACCATCCGAACCGAAAGCTTGATAGTTATTTCTATTCACAACCGGTGTTCCACACCTTATGTTTATTTTTTGGGGTGCGAATTTTTTTTATTTAACTAAGTAATACAAAGTCCATAAAAATAATTAATGAATGGAAGAGTATGATTTGTAAGCTTATGAATGACTTATATATTTGAAGTAATTTTTAAGGGAAATAATTTATGAAAATACATAATTTAATTGTAATTTGAAATTTGCAATTTTGCAGCTAGTAGATAAATCTATCCTTTTTCCCTTTTGTAAATGAGTGGAATCTAAAAAAGGAGAAAAACTTGGCTGTAATCATTCATCAGTCCAAATAAGCGGCCAATCACTGTGTGCCACATGTCACACGTCACACTTGGACCAACCATAAGCATAAAGAATCTTTTTTTTTTTTTTTTAATAGCATAGAGAATCTTTAAAAGAGAGTGGGGCAGTAATATTTCTCTAGTCAAATTTACAAATGAATATTGGTGTCATGGGATAAGGTTGGAAGTACATTTTTGTCCTCTACTCCCAACATTGATATATAATTGTGGGTTCATATGATCAATTGTGAAGGGAAGCTTAGACCATTGATCTTTTCTTTTCTTTTTCTGTTTTTTTTTTTTTTTTTTTGAGCAATATGTGGGTTGGAGATTCGAACCACAGACTTTGTAGTCATCAGTACAATTTTGTGTCAATTAAGCTATGCTCTTGTTAGCGATTAGACCATTGATCCTTGGATTGGTAATAGTTTGATGTATTATTTAATTTTATGAATTAAAATTTATTTTTAAATATTGTTATTAATATTTAAAAAAATTATGGTATTTATTAGAAGTATCATAAATTTAGCATTTAAGTGGTGTCCAAACATATCTGCATTTTGAAATATACTATTAGGCATTTATATATAAATAGTACAATATATGTGTGTGTTTAAATATAGCATAAAGTTTGAAGTTTTACAAAAATGTAGCAAAATACAAATCAAACTTTAGTTCAATTGTAATATAATAAACATTAAATTACAAGTCCAATCCTCTGAAATTAAAAAGTTTTTGTCATATAAATTTCTTTAACTTAAAAACTTTTCAAATAGGGTCTTTAAATTTTCAATATTGTGTATAATAGATTCCTAAACTCTGAAGGTTCTCTGATCGGAGCTGGTGGGAAGAAAACATCAAAGAAAATCGAGATCAATTTGTTGGAATCTCTCGCTATTGTCGAAGGGCTCAATCAAATTTCAACAAAATTTCAAGCGTACCCAGAGATTCGAGATCACGAGGTGGTAGTCGAGTCGGGCACGACTGAGATAGTGAAGTTGCTTAATCGGGAAATGATCGACCTCTCAGAGGTCTTTGTCGTCATCGATGAGATCCGTGGGCTAGCGTTGCAAGCAAATGTAGCGGCGTTCAGCTTCAGTCCAAGATCATCAAATTTTTTGGCGCACTCCCTTTGCGCGCGCAGTGGTCAGACATGGCGAATTTTCTTTTTTCTGTTTTGATCCTTCTCCGCTCTTGAGAATGGATGGTGTTGGTAGGGGGAAGTTTTTTTGGCTCCCCTGGTTTTCCTCAATAGTGGAGGATCTGGTTGTTGTACCAAACCGTTTGCCTTCTTAATGAGATGTTATTTTCAAAAAAAAAAGTGTCTAATAAAATTCTAAGCTTTTGATCGTGTCTGGTCTATTGACTTATTTGATAGTTTTTTTTTTAAAAAAAAATCACGAACTCATTGGACAAAAAAAAGTTTAATGTCTTATTAAACACAAGTTTTTGCTCAAGAAGAACGTGTTTCCTCCTTTCCAACTCCTGTTTTATCTAGACGGGTGGATTCCTTGCAATGGATCCCAGATTCTCAGGGTCGTTTCTCTGTTGCTTCTGCGAGGTGTTTATATTGGAGTTTGGCATCGGTAGATCGACCTCAACCTCATTCGATTATTTTCTCAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAGTTTTTCATTTGGACTGTTATCTATAGAAGATTAAATACAACAGACAGGCTTCAACAAATTTTCACATCCACTGCTTTGAATCCGAGTTGTTGTCCCCTTTGCCATGCTGGCTCGGATGCGTTGGATCATATTTTTGTCCATTGTGGAGTTGCTTCTGACATTTGGCACTCTTTTCATCTAGCTTCTGGTATTCATATGCCAATTCCTAGCCAAGTTAATTGGATATGTTTAGAGGCTTTTGCAGTCAAGGCTAATTTGCAGAGGGAGATTCTTATTCAGTCCATGATTGCAGCAATACTATGGGTTATTTGGGGCGAGCGCAATAGTCTGATTTTTCAGAACAATTCTCGGACCAACATCAATATTTGGGAAGATATTATTTCGCTCGCGTCCTTTTGGGTATCATCCACAAAAGCTTTCTCCAATTACCAGGCTTCAACTATCGCCTTGAATTGGAAAGTTTTTCTGTAA

mRNA sequence

ATGGGTCGAGGTCGAGCATTCTCCTCGACCGAGGCTGAGGAGGAAAAAATGGGGTCGGGGAGGGCCCCGACCCTTCTACCGTTTGCCTTGGGTCGCTCTTCACCAATCTGGGTCCGACAATTCCAGACCATCCGAACCGAAAGCTTGATAGTTATTTCTATTCACAACCGGTGTTCCACACCTTATGTTTATTTTTTGGGATTCCTAAACTCTGAAGGTTCTCTGATCGGAGCTGGTGGGAAGAAAACATCAAAGAAAATCGAGATCAATTTGTTGGAATCTCTCGCTATTGTCGAAGGGCTCAATCAAATTTCAACAAAATTTCAAGCGTACCCAGAGATTCGAGATCACGAGGTGGTAGTCGAGTCGGGCACGACTGAGATAGTGAAGTTGCTTAATCGGGAAATGATCGACCTCTCAGAGGTCTTTGTCGTCATCGATGAGATCCGTGGGCTAGCGTTGCAAGCAAATGTAGCGGCGTTCAGCTTCAGTCCAAGATCATCAAATTTTTTGGCGCACTCCCTTTGCGCGCGCAGTGAAGAACGTGTTTCCTCCTTTCCAACTCCTGTTTTATCTAGACGGGTGGATTCCTTGCAATGGATCCCAGATTCTCAGGGTCGTTTCTCTGTTGCTTCTGCGAGGTGTTTATATTGGAGTTTGGCATCGGTAGATCGACCTCAACCTCATTCGATTATTTTCTCAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAGTTTTTCATTTGGACTGTTATCTATAGAAGATTAAATACAACAGACAGGCTTCAACAAATTTTCACATCCACTGCTTTGAATCCGAGTTGTTGTCCCCTTTGCCATGCTGGCTCGGATGCGTTGGATCATATTTTTGTCCATTGTGGAGTTGCTTCTGACATTTGGCACTCTTTTCATCTAGCTTCTGGTATTCATATGCCAATTCCTAGCCAAGTTAATTGGATATGTTTAGAGGCTTTTGCAGTCAAGGCTAATTTGCAGAGGGAGATTCTTATTCAGTCCATGATTGCAGCAATACTATGGGTTATTTGGGGCGAGCGCAATAGTCTGATTTTTCAGAACAATTCTCGGACCAACATCAATATTTGGGAAGATATTATTTCGCTCGCGTCCTTTTGGGTATCATCCACAAAAGCTTTCTCCAATTACCAGGCTTCAACTATCGCCTTGAATTGGAAAGTTTTTCTGTAA

Coding sequence (CDS)

ATGGGTCGAGGTCGAGCATTCTCCTCGACCGAGGCTGAGGAGGAAAAAATGGGGTCGGGGAGGGCCCCGACCCTTCTACCGTTTGCCTTGGGTCGCTCTTCACCAATCTGGGTCCGACAATTCCAGACCATCCGAACCGAAAGCTTGATAGTTATTTCTATTCACAACCGGTGTTCCACACCTTATGTTTATTTTTTGGGATTCCTAAACTCTGAAGGTTCTCTGATCGGAGCTGGTGGGAAGAAAACATCAAAGAAAATCGAGATCAATTTGTTGGAATCTCTCGCTATTGTCGAAGGGCTCAATCAAATTTCAACAAAATTTCAAGCGTACCCAGAGATTCGAGATCACGAGGTGGTAGTCGAGTCGGGCACGACTGAGATAGTGAAGTTGCTTAATCGGGAAATGATCGACCTCTCAGAGGTCTTTGTCGTCATCGATGAGATCCGTGGGCTAGCGTTGCAAGCAAATGTAGCGGCGTTCAGCTTCAGTCCAAGATCATCAAATTTTTTGGCGCACTCCCTTTGCGCGCGCAGTGAAGAACGTGTTTCCTCCTTTCCAACTCCTGTTTTATCTAGACGGGTGGATTCCTTGCAATGGATCCCAGATTCTCAGGGTCGTTTCTCTGTTGCTTCTGCGAGGTGTTTATATTGGAGTTTGGCATCGGTAGATCGACCTCAACCTCATTCGATTATTTTCTCAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAGTTTTTCATTTGGACTGTTATCTATAGAAGATTAAATACAACAGACAGGCTTCAACAAATTTTCACATCCACTGCTTTGAATCCGAGTTGTTGTCCCCTTTGCCATGCTGGCTCGGATGCGTTGGATCATATTTTTGTCCATTGTGGAGTTGCTTCTGACATTTGGCACTCTTTTCATCTAGCTTCTGGTATTCATATGCCAATTCCTAGCCAAGTTAATTGGATATGTTTAGAGGCTTTTGCAGTCAAGGCTAATTTGCAGAGGGAGATTCTTATTCAGTCCATGATTGCAGCAATACTATGGGTTATTTGGGGCGAGCGCAATAGTCTGATTTTTCAGAACAATTCTCGGACCAACATCAATATTTGGGAAGATATTATTTCGCTCGCGTCCTTTTGGGTATCATCCACAAAAGCTTTCTCCAATTACCAGGCTTCAACTATCGCCTTGAATTGGAAAGTTTTTCTGTAA

Protein sequence

MGRGRAFSSTEAEEEKMGSGRAPTLLPFALGRSSPIWVRQFQTIRTESLIVISIHNRCSTPYVYFLGFLNSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIRDHEVVVESGTTEIVKLLNREMIDLSEVFVVIDEIRGLALQANVAAFSFSPRSSNFLAHSLCARSEERVSSFPTPVLSRRVDSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFSNLWKALIPKKIKFFIWTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSFHLASGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNINIWEDIISLASFWVSSTKAFSNYQASTIALNWKVFL

Homology

[Close]

BLAST of Lag0024689 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196  DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
            DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 852  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 911

Query: 256  WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
            WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 912  WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 971

Query: 316  SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
            S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 972  SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 1031

Query: 376  IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
            IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 1032 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]

BLAST of Lag0024689 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196  DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
            DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 852  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 911

Query: 256  WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
            WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 912  WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 971

Query: 316  SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
            S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 972  SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 1031

Query: 376  IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
            IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 1032 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]

BLAST of Lag0024689 vs. NCBI nr
Match: TYK13741.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196 DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
           DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 42  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 101

Query: 256 WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
           WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 102 WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 161

Query: 316 SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
           S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 162 SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 221

Query: 376 IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
           IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 222 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 246

[Close]

BLAST of Lag0024689 vs. NCBI nr
Match: TYK10356.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-30
Identity = 77/208 (37.02%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 196 DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFSNLWKALIPKKIKFFIWTVIYR 255
           DS  WI +S G +SVAS +              +   F NLWK+ IPKK KFFIWT++Y 
Sbjct: 679 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 738

Query: 256 RLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWH--SFHLASGIHMP 315
            +NT D+L +   +    PS C +C    +   H+F+ C +A  IW+  S HL S ++  
Sbjct: 739 SVNTADQLTKRMPNLCSRPSWCVMCKRNEEDRIHLFILCPIAKSIWNLISSHLKSNVNCL 798

Query: 316 IPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNINIWEDII 375
            P     +C+   + K   ++ I++ +  A+ LW IW ERN+ IF    +T  ++WEDI 
Sbjct: 799 SPKD---LCITMCSWKQKTKKNIILFNTYASALWNIWLERNARIFNGKEKTVADLWEDIK 858

Query: 376 SLASFWVSSTKAFSNYQASTIALNWKVF 402
           +LA  W S    F+NYQA++IALN   F
Sbjct: 859 ALAGLWTSRFLLFTNYQATSIALNLNAF 883

[Close]

BLAST of Lag0024689 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-29
Identity = 68/200 (34.00%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 200  WIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFSNLWKALIPKKIKFFIWTVIYRRLNT 259
            W P    +++VASA+ + +  +S+ +         +LW++ IP+K KFFIWT+++++LNT
Sbjct: 1624 WNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNT 1683

Query: 260  TDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSFHLASGIHMPIPSQVN 319
             D +Q+   S +LNPS C  C + ++ ++H+F+ C  A  +W+ +   +G  M + + V 
Sbjct: 1684 MDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPM-VNTNVK 1743

Query: 320  WICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNINIWEDIISLASFW 379
             +CL+         + I+  +   A LW IW  RN+LIF +   + +N WEDI +L   W
Sbjct: 1744 DLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSW 1803

Query: 380  VSSTKAFSNYQASTIALNWK 400
             S +K   NY  +TIALN K
Sbjct: 1804 SSKSKTLKNYSQATIALNIK 1822

[Close]

BLAST of Lag0024689 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196  DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
            DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 852  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 911

Query: 256  WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
            WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 912  WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 971

Query: 316  SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
            S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 972  SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 1031

Query: 376  IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
            IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 1032 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]

BLAST of Lag0024689 vs. ExPASy TrEMBL
Match: A0A5D3CPL6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34842G00010 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196 DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
           DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 42  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 101

Query: 256 WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
           WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 102 WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 161

Query: 316 SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
           S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 162 SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 221

Query: 376 IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
           IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 222 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 246

[Close]

BLAST of Lag0024689 vs. ExPASy TrEMBL
Match: A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-30
Identity = 76/214 (35.51%), Postives = 117/214 (54.67%), Query Frame = 0


Query: 196  DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSI------IFSNLWKALIPKKIKFFI 255
            DS  W  +S G ++VAS +       ++ +P+ + +       F NLWK  IPKK  FFI
Sbjct: 852  DSPMWTLNSNGLYTVASVK------KTLQQPEQNLLDFQSQNTFKNLWKTSIPKKCIFFI 911

Query: 256  WTVIYRRLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSF--HLA 315
            WT++Y  +NT ++L +   +    PS C +C    +   H+F+ C +A  IW S   HL+
Sbjct: 912  WTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFILCPIAKSIWRSISSHLS 971

Query: 316  SGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNIN 375
            S ++   P +   +C+   + K   ++ +++ +  A+ LW IW ERN+ IF    +T   
Sbjct: 972  SNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAE 1031

Query: 376  IWEDIISLASFWVSSTKAFSNYQASTIALNWKVF 402
            IWEDI +LA  W S +  FSNYQAS+IALN   F
Sbjct: 1032 IWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]

BLAST of Lag0024689 vs. ExPASy TrEMBL
Match: A0A5D3CJ08 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00340 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-30
Identity = 77/208 (37.02%), Postives = 113/208 (54.33%), Query Frame = 0


Query: 196 DSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFSNLWKALIPKKIKFFIWTVIYR 255
           DS  WI +S G +SVAS +              +   F NLWK+ IPKK KFFIWT++Y 
Sbjct: 679 DSPTWILNSDGFYSVASVKKALLQPDQGILALQNQNTFKNLWKSSIPKKCKFFIWTLLYD 738

Query: 256 RLNTTDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWH--SFHLASGIHMP 315
            +NT D+L +   +    PS C +C    +   H+F+ C +A  IW+  S HL S ++  
Sbjct: 739 SVNTADQLTKRMPNLCSRPSWCVMCKRNEEDRIHLFILCPIAKSIWNLISSHLKSNVNCL 798

Query: 316 IPSQVNWICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNINIWEDII 375
            P     +C+   + K   ++ I++ +  A+ LW IW ERN+ IF    +T  ++WEDI 
Sbjct: 799 SPKD---LCITMCSWKQKTKKNIILFNTYASALWNIWLERNARIFNGKEKTVADLWEDIK 858

Query: 376 SLASFWVSSTKAFSNYQASTIALNWKVF 402
           +LA  W S    F+NYQA++IALN   F
Sbjct: 859 ALAGLWTSRFLLFTNYQATSIALNLNAF 883

[Close]

BLAST of Lag0024689 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.5e-30
Identity = 68/200 (34.00%), Postives = 114/200 (57.00%), Query Frame = 0


Query: 200  WIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFSNLWKALIPKKIKFFIWTVIYRRLNT 259
            W P    +++VASA+ + +  +S+ +         +LW++ IP+K KFFIWT+++++LNT
Sbjct: 1624 WNPSDSKKYTVASAKDIAFKESSIPKETNWEKELKHLWRSHIPQKCKFFIWTMVHQKLNT 1683

Query: 260  TDRLQQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASDIWHSFHLASGIHMPIPSQVN 319
             D +Q+   S +LNPS C  C + ++ ++H+F+ C  A  +W+ +   +G  M + + V 
Sbjct: 1684 MDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARSLWNMWSSETGTPM-VNTNVK 1743

Query: 320  WICLEAFAVKANLQREILIQSMIAAILWVIWGERNSLIFQNNSRTNINIWEDIISLASFW 379
             +CL+         + I+  +   A LW IW  RN+LIF +   + +N WEDI +L   W
Sbjct: 1744 DLCLQLCRQTGRNAKNIISFNSAIATLWTIWIRRNNLIFADKDSSYLNAWEDICTLTGSW 1803

Query: 380  VSSTKAFSNYQASTIALNWK 400
             S +K   NY  +TIALN K
Sbjct: 1804 SSKSKTLKNYSQATIALNIK 1822

[Close]

BLAST of Lag0024689 vs. TAIR 10
Match: AT1G33710.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.0e-06
Identity = 44/184 (23.91%), Postives = 83/184 (45.11%), Query Frame = 0


Query: 185 SFPTPVLSRRVDSLQWIPDSQGRFSVASARCLYWSLASVDRPQPHSIIFS-NLWKALIPK 244
           S   P LS  +D   W+ + +     +SA+   W+     RP+   + ++  +W      
Sbjct: 5   SIDLPTLSGELDVYDWVVEDKLCNGFSSAKT--WAAL---RPRSDVVSWAKTVWFKGATP 64

Query: 245 KIKFFIWTVIYRRLNTTDRL----QQIFTSTALNPSCCPLCHAGSDALDHIFVHCGVASD 304
           K  F +W     RL T  RL     Q+ T+       C LC    +  DH+F+ C  A  
Sbjct: 65  KHAFHMWVTNLDRLPTKTRLASWGMQLQTT-------CGLCSLDIEDRDHLFLTCEFACF 124

Query: 305 IWHSFHLASGIHMPIPSQVNWICLEAFAVKANLQREILIQSMIA-AILWVIWGERNSLIF 363
           +WH+  ++  + +P  S V W  L  + ++ N +    ++ +I  ++L+ IW +RN+ + 
Sbjct: 125 LWHT--VSVRLELPAFSFVVWNDLMDWTLQRNRRSPPTLRKLIVQSVLYAIWKQRNNFLH 174

The following BLAST results are available for this feature:

BLAST of Lag0024689 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902461.1	3.5e-30	35.51	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
KAA0039770.1	3.5e-30	35.51	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]
TYK13741.1	3.5e-30	35.51	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK10356.1	4.6e-30	37.02	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK08190.1	1.8e-29	34.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0024689 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0024689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM72	1.7e-30	35.51	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CPL6	1.7e-30	35.51	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E2K5	1.7e-30	35.51	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A5D3CJ08	2.2e-30	37.02	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	8.5e-30	34.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0024689 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33710.1	1.0e-06	23.91	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 226..301 e-value: 2.1E-14 score: 54.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 69..178 e-value: 1.3E-7 score: 31.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 229..350
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 229..350

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024689.1	Lag0024689.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity