Lag0024685 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024685
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr10: 4939212 .. 4939583 (+)
RNA-Seq ExpressionLag0024685
SyntenyLag0024685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCGATTCTCAAAGGTATTAGAAGCTTCCGTTCTGTGAGAGCTTCGCGCCAAAATCTGGATATCCCGCCGGTGATGGTCGTTTCTGATGCCATCGGTGTTATTAATCTGTTGAACAAAATAGACACTGATCTAACGGAAATCTCGTTCTTAGTTGAAGAAATCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTTGCAAAATGTCGACGCTCACAAGTTAGCGCGTTTTGCCGCTTTTGGGTCGTTTGGGTGTAACAGACGGGTTTTGGATCCTTCTTCCATTTCGGAAGAGGGCTTTTTTTTGTTTGGGTCGGTTTGTACCCGATTTGATAATCCCCCTCCCTAG

mRNA sequence

ATGATGGCGATTCTCAAAGGTATTAGAAGCTTCCGTTCTGTGAGAGCTTCGCGCCAAAATCTGGATATCCCGCCGGTGATGGTCGTTTCTGATGCCATCGGTGTTATTAATCTGTTGAACAAAATAGACACTGATCTAACGGAAATCTCGTTCTTAGTTGAAGAAATCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTTGCAAAATGTCGACGCTCACAAGTTAGCGCGTTTTGCCGCTTTTGGGTCGTTTGGGTGTAACAGACGGGTTTTGGATCCTTCTTCCATTTCGGAAGAGGGCTTTTTTTTGTTTGGGTCGGTTTGTACCCGATTTGATAATCCCCCTCCCTAG

Coding sequence (CDS)

ATGATGGCGATTCTCAAAGGTATTAGAAGCTTCCGTTCTGTGAGAGCTTCGCGCCAAAATCTGGATATCCCGCCGGTGATGGTCGTTTCTGATGCCATCGGTGTTATTAATCTGTTGAACAAAATAGACACTGATCTAACGGAAATCTCGTTCTTAGTTGAAGAAATCGAGAGTCTGGCCGTTGATTTCGAGTTCATCTCCTTCGCCCACATCCCTCGTTTGCAAAATGTCGACGCTCACAAGTTAGCGCGTTTTGCCGCTTTTGGGTCGTTTGGGTGTAACAGACGGGTTTTGGATCCTTCTTCCATTTCGGAAGAGGGCTTTTTTTTGTTTGGGTCGGTTTGTACCCGATTTGATAATCCCCCTCCCTAG

Protein sequence

MMAILKGIRSFRSVRASRQNLDIPPVMVVSDAIGVINLLNKIDTDLTEISFLVEEIESLAVDFEFISFAHIPRLQNVDAHKLARFAAFGSFGCNRRVLDPSSISEEGFFLFGSVCTRFDNPPP
Homology
The following BLAST results are available for this feature:
BLAST of Lag0024685 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0024685 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 20..86
e-value: 1.1E-8
score: 34.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..90
e-value: 2.0E-7
score: 33.0
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..84
e-value: 4.40613E-10
score: 51.546
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024685.1Lag0024685.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity