Lag0024534 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0024534
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTranscription termination factor 4
Locationchr10: 3761868 .. 3763941 (-)
RNA-Seq ExpressionLag0024534
SyntenyLag0024534
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCAGTTTCCGGCTTTCATGACCCAATACCCTTGGTCCACAAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAATGGCCCCAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTCGAAGAAAAGGTACTTGCCATTTCCTTTTCGAAAACCCTACTGTTTTTTCTTTCTCTCTGCTATTTTGTTTCAACAATTGCGAACTAATCGATAATGAAATGATCGGAATGTTGATTTTAGTTTAATTACGGTCTATTGTGGATTCTTCGATGCGTGCCCGCTCTTGATTTTGATTTTTTTTTTTTTAATAATGTTTGTAAGTATTTTTGCTTTGATCTTTGTTTTCTTACGCCTACATGGAAATCCCTATATTTTGTTTCATGTACAGGAACAAAAGTTTGCGTTATTCTGAGAATTGAACTGCTTGAACTGCTCTGTGCATTTGCAAAGATCATTTGTATATCGAATGCAATGTTCGAGGTAGTGTAATTAATTGAAATCGACACTTGCTCGAAAGAATTGAAACGAATACCACAAAACTCATGATATAATTTAATTATCGTGGGAGTTGTGCAATTTACTTACTAAGTAGTAGGAAGAGACTGTTTTTGAATCAGATCTAGGTAGAGTTGTGAGGTTTTTACCTTTCTCAATTGCTTCTTAAACTGTCTTCTCTTGGTTGTCTGCTTTGAATGTTTTGTTTTTGAGAAATTTTCTGCTATGTTCTTTCAACATTGGATAGAACTGCTGTTAATTACTTCTTCATCAATACTCTGTTCATTTGAGGCTGGAACCCTAGAGAAACTCGTTGATACCCTACTTGAAGGGTTTGTTGCAGAAAATGGTCTATTACCACTCTAGAACTAGCTTGAATATGATAGTTATCCTTAACCTTGTGGTTCAAAGTTCAAAGGTAAAGAAGCATATATCATTTTGATCAAGAATTCAGAGGTTCGAATCTCCACTCCCGTGTTGATTTCATAAGAGTAAAAAAAAGTTCAAACGTAAAGAAGGGGATATTCCAATGTGTAGTATAGTGTTTTCAATGGTGGAGGCCTGTGTTACTTAAGATTACAAAGTGGTTTTTTGTACTGGGATCATAGATTTATCAGTTCATGGGCTGCAAAACCCAAGCTTCTGCCTACTTGTTATTTTGCACACTAAATTATAAATCCATACACCAAACACAGTCGACACAAAGGTTTCTTTAATCTATTCCTTTCTATAATTCAACACGGATTACAGATTCACTTTCCTAAATCTACATAAAAGGTTTTGCTCACACGGGTTACAAATTCACGTTCATAAATCTACATAAAAGGTTTTGCTCTTCTCTTCCTGTTCTTTTGTAGATCGTTAATTATTGGATGTGTTATTCTGAAAATTTACAACTACCTTCTCTCTTCCTTCTGTTAGAGAGAGGACACGACACAGATCTCCACAATGGTATGATATTGTCCACCTTGGACATAAACCCTCATGGCTTTGCGTTGGGTTCCACCCAAAAGGCTTCATACCAGTGGAGATACTTGTCATCCCTTATAAACCCACGATCGTCTCCTTGTTTAGCCAATGTCGGACTTTGGTTGCACTCTCTAATTCCCAACACCTTTAAGAATAATACCAATGAAGATACTTGTCCTCCCTTATAAATCCATGATGATGATGATTAAAGAACTCTATGATGGTGATGATTATGCTTACATTCAACTACCCTCCTAAACTCTCAGACAAAGAAGAGAAGGCTTCCGTTCTCACTCTTTTATTAATTCAATTGGACCCCAACCTCAAGTCGGAGGAACCAACAAAACAAACCTTGCAATTCTCTTTGTGCACTATTGCAATTTCATAAGGATCCTCTTTGTATACTCACTCCACCTCTTACTTGTGTATATTACTATCATGACAGTGCAATGAAATCAGGAAGATAAACAGCAACCTGGTGGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGATGTGGAGGCAGAAGATGACGATGCTGACAATGCTGAGGAGTCTGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA

mRNA sequence

ATGCTGCAGTTTCCGGCTTTCATGACCCAATACCCTTGGTCCACAAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAATGGCCCCAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTCGAAGAAAAGTGCAATGAAATCAGGAAGATAAACAGCAACCTGGTGGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGATGTGGAGGCAGAAGATGACGATGCTGACAATGCTGAGGAGTCTGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA

Coding sequence (CDS)

ATGCTGCAGTTTCCGGCTTTCATGACCCAATACCCTTGGTCCACAAGGACTATTCCGACGTCGTTTTTACTGCCGTCTCAATGGCCCCAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTCGAAGAAAAGTGCAATGAAATCAGGAAGATAAACAGCAACCTGGTGGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGATGTGGAGGCAGAAGATGACGATGCTGACAATGCTGAGGAGTCTGAGGCTGAAGAATTTGAGCAGGAAACTGGTTAA

Protein sequence

MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLVVIGKMTADNDKEDVEAEDDDADNAEESEAEEFEQETG
Homology
[Close]
BLAST of Lag0024534 vs. NCBI nr
Match: XP_008438807.1 (PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 uncharacterized protein LOC111456762 [Cucurbita moschata] >XP_022994682.1 uncharacterized protein LOC111490324 [Cucurbita maxima] >XP_023541351.1 uncharacterized protein LOC111801554 [Cucurbita pepo subsp. pepo] >KAA0055258.1 transcription termination factor 4 [Cucumis melo var. makuwa] >KAG6573081.1 hypothetical protein SDJN03_26968, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012267.1 hypothetical protein SDJN02_25019 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 9.7e-43
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDVEAEDDDADNAEESEAEEFEQETG 98
          VIGKMTADNDKED+EAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

[Close]
BLAST of Lag0024534 vs. NCBI nr
Match: XP_038894516.1 (uncharacterized protein LOC120083062 [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRK NSN V
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNQV 60

Query: 61 VIGKMTADNDKEDVEAEDDDADNAEESEAEEFEQETG 98
          VIGKM ADNDKED+EAEDDDADNAEESEAEEFEQETG
Sbjct: 61 VIGKMIADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

[Close]
BLAST of Lag0024534 vs. NCBI nr
Match: XP_004152491.1 (uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical protein Csa_014279 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDVEAEDDDADNAEESEAEEFEQETG 98
          VIGKMTADNDKED+EAEDDDADNA+ESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 97

[Close]
BLAST of Lag0024534 vs. NCBI nr
Match: XP_022137094.1 (uncharacterized protein LOC111008654 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 4.1e-41
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDVEAEDDDADNAEESEAEEFEQET 97
          VIGKM+ADNDKED+EAEDDDADN EESEAEEFEQET
Sbjct: 61 VIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET 96

[Close]
BLAST of Lag0024534 vs. NCBI nr
Match: XP_018813880.1 (uncharacterized protein LOC108985877 [Juglans regia] >KAF5476731.1 hypothetical protein F2P56_003439 [Juglans regia])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKINSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDV--EAEDDDADNAEESEAEEFEQET 97
          VIGK T DNDKED   +A+DDDADNAEESE EEFEQET
Sbjct: 61 VIGKTTVDNDKEDYDNDADDDDADNAEESEGEEFEQET 98

The following BLAST results are available for this feature:
BLAST of Lag0024534 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438807.19.7e-4397.94PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 u... [more]
XP_038894516.12.4e-4195.88uncharacterized protein LOC120083062 [Benincasa hispida][more]
XP_004152491.12.4e-4194.85uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical ... [more]
XP_022137094.14.1e-4195.83uncharacterized protein LOC111008654 [Momordica charantia][more]
XP_018813880.11.4e-3688.78uncharacterized protein LOC108985877 [Juglans regia] >KAF5476731.1 hypothetical ... [more]
BLAST of Lag0024534 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 67..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..97
NoneNo IPR availablePANTHERPTHR37771:SF2OS02G0593400 PROTEINcoord: 1..97
NoneNo IPR availablePANTHERPTHR37771OS02G0593400 PROTEINcoord: 1..97
IPR026182Anaphase-promoting complex subunit 15PFAMPF15243ANAPC15coord: 9..95
e-value: 1.8E-18
score: 66.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0024534.1Lag0024534.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component GO:0005680 anaphase-promoting complex