Lag0024475 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024475
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NHL domain protein
Location	chr10: 3376530 .. 3377027 (-)
RNA-Seq Expression	Lag0024475
Synteny	Lag0024475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGACCGTGACGGAGCTTTCAAAGAATCAGAATCGATCGGAGAAATCGACGGCGCCGATGCTCTTTTGGCGTCTAAACGATATGGTTGTTTCTGCTTCCCTTGCTTTGGACCTTGCCAGTCGCCTTCCGACGAGCTCTCCTGGTGGGAACGGGCGAAGGCGAAGGCGAAAGCCACGAAGTTCGACGGCGACGATCACTGGTGGTCCGGCGGAATCAGATCCCTGAAGAAGCTCCGCGAATGGTCCGAGATCGTCGCCGGTCCGAGATGGAAGACGTTCATTCGCCGGTTCAACAGGAACCGGCCCGCCACCGTGAAGCTTGGGAAATTCCAGTACGATCCCATTAGTTACGCTTTGAATTTCGACGAGGGACATAATGGTGATGGGGATTTCGAAGGGGAGGAATACAACGGGGGGTTTCAAAACTTCTCCGGCCGGTTTGCTGCCGTTCCGGCGCCGGTGAAGTCGTCGGCGGCGGCGGCGGCGACTGGATAG

mRNA sequence

ATGGGAGACCGTGACGGAGCTTTCAAAGAATCAGAATCGATCGGAGAAATCGACGGCGCCGATGCTCTTTTGGCGTCTAAACGATATGGTTGTTTCTGCTTCCCTTGCTTTGGACCTTGCCAGTCGCCTTCCGACGAGCTCTCCTGGTGGGAACGGGCGAAGGCGAAGGCGAAAGCCACGAAGTTCGACGGCGACGATCACTGGTGGTCCGGCGGAATCAGATCCCTGAAGAAGCTCCGCGAATGGTCCGAGATCGTCGCCGGTCCGAGATGGAAGACGTTCATTCGCCGGTTCAACAGGAACCGGCCCGCCACCGTGAAGCTTGGGAAATTCCAGTACGATCCCATTAGTTACGCTTTGAATTTCGACGAGGGACATAATGGTGATGGGGATTTCGAAGGGGAGGAATACAACGGGGGGTTTCAAAACTTCTCCGGCCGGTTTGCTGCCGTTCCGGCGCCGGTGAAGTCGTCGGCGGCGGCGGCGGCGACTGGATAG

Coding sequence (CDS)

ATGGGAGACCGTGACGGAGCTTTCAAAGAATCAGAATCGATCGGAGAAATCGACGGCGCCGATGCTCTTTTGGCGTCTAAACGATATGGTTGTTTCTGCTTCCCTTGCTTTGGACCTTGCCAGTCGCCTTCCGACGAGCTCTCCTGGTGGGAACGGGCGAAGGCGAAGGCGAAAGCCACGAAGTTCGACGGCGACGATCACTGGTGGTCCGGCGGAATCAGATCCCTGAAGAAGCTCCGCGAATGGTCCGAGATCGTCGCCGGTCCGAGATGGAAGACGTTCATTCGCCGGTTCAACAGGAACCGGCCCGCCACCGTGAAGCTTGGGAAATTCCAGTACGATCCCATTAGTTACGCTTTGAATTTCGACGAGGGACATAATGGTGATGGGGATTTCGAAGGGGAGGAATACAACGGGGGGTTTCAAAACTTCTCCGGCCGGTTTGCTGCCGTTCCGGCGCCGGTGAAGTCGTCGGCGGCGGCGGCGGCGACTGGATAG

Protein sequence

MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKATKFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYALNFDEGHNGDGDFEGEEYNGGFQNFSGRFAAVPAPVKSSAAAAATG

Homology

[Close]

BLAST of Lag0024475 vs. NCBI nr
Match: XP_022923865.1 (uncharacterized protein LOC111431456 [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 3.8e-79
Identity = 144/164 (87.80%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKAT 60
           MGDRDG FKE ESIGEIDGADALLAS+RYGCFCFPCFG  +S SDELSWWERAKAKAK+T
Sbjct: 1   MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKST 60

Query: 61  KFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120
           KFDG+DHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPA VKLGKFQYDPISYAL
Sbjct: 61  KFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGKFQYDPISYAL 120

Query: 121 NFDEGHNGDGDFEGEEYNGGFQNFSGRFAAVPAPVKSSAAAAAT 165
           NFDEGHNGD DFEG+EY+GGFQNFS RF+AVPA  KSS AA A+
Sbjct: 121 NFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS 164

[Close]

BLAST of Lag0024475 vs. NCBI nr
Match: XP_023519821.1 (uncharacterized protein LOC111783153 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKAT 60
           MGDRDG FKE ESIGEIDGADALLAS+RY CFCFPCFG  +S SDELSWWERAKAKAK+T
Sbjct: 1   MGDRDGGFKEIESIGEIDGADALLASRRYSCFCFPCFGQSRSASDELSWWERAKAKAKST 60

Query: 61  KFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120
           KFDG+DHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPA VKLGKFQYDPISYAL
Sbjct: 61  KFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGKFQYDPISYAL 120

Query: 121 NFDEGHNGDGDFEGEEYNGGFQNFSGRFAAVPAPVKSSAAAAAT 165
           NFDEGHNGD DFEG+EY+GGFQNFS RF+AVPA  KSS AA A+
Sbjct: 121 NFDEGHNGDVDFEGDEYSGGFQNFSDRFSAVPASGKSSGAAVAS 164

[Close]

BLAST of Lag0024475 vs. NCBI nr
Match: XP_038894780.1 (uncharacterized protein LOC120083201 [Benincasa hispida])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKAT 60
           MGDRDGAFKE ESIGEIDGADALLASKRY CFCFPCFGP +S SDE+SWWER K KAK+T
Sbjct: 1   MGDRDGAFKELESIGEIDGADALLASKRYSCFCFPCFGPRRSASDEVSWWERVKTKAKST 60

Query: 61  KFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120
           KFDG+DHWW+GGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL
Sbjct: 61  KFDGEDHWWTGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120

Query: 121 NFDEGHNGDGDFEGEEYN-GGFQNFSGRFAAVPAPVKSSAAAAATG 166
           NFD+GHNGD DF+G+EY+ GGFQNFS RFAAVP PVKSS A A  G
Sbjct: 121 NFDDGHNGDVDFDGDEYSGGGFQNFSDRFAAVPTPVKSSGAPAVNG 166

[Close]

BLAST of Lag0024475 vs. NCBI nr
Match: XP_023000665.1 (uncharacterized protein LOC111495035 [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKAT 60
           MGDRDG FKE ESIGEIDGADALLAS+RY CFCFPCFG  +S SDELSWWERAKAKAK+T
Sbjct: 1   MGDRDGGFKEIESIGEIDGADALLASRRYSCFCFPCFGQSRSASDELSWWERAKAKAKST 60

Query: 61  KFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120
           KFDG+DHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPA VKLGKFQYDPISYAL
Sbjct: 61  KFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKLGKFQYDPISYAL 120

Query: 121 NFDEGHNGDGDFEGEEYNGGFQNFSGRFAAVPAPVKSSAAAAAT 165
           NFDEGHNGD +FEG+EY+GGFQNFS RF+AVPA  KSS AA A+
Sbjct: 121 NFDEGHNGDVNFEGDEYSGGFQNFSDRFSAVPASAKSSGAAVAS 164

[Close]

BLAST of Lag0024475 vs. NCBI nr
Match: KAG6584232.1 (hypothetical protein SDJN03_20164, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019829.1 hypothetical protein SDJN02_18793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 9.3e-78
Identity = 142/164 (86.59%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1   MGDRDGAFKESESIGEIDGADALLASKRYGCFCFPCFGPCQSPSDELSWWERAKAKAKAT 60
           MGDRDG FKE ESIGEIDGADALLAS+RYGCFCFPCFG  +S SDELSWWERAKAKAK+T
Sbjct: 1   MGDRDGGFKEIESIGEIDGADALLASRRYGCFCFPCFGQSRSASDELSWWERAKAKAKST 60

Query: 61  KFDGDDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPATVKLGKFQYDPISYAL 120
           KFDG+DHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPA VK GKFQYDPISYAL
Sbjct: 61  KFDGEDHWWSGGIRSLKKLREWSEIVAGPRWKTFIRRFNRNRPAAVKPGKFQYDPISYAL 120

Query: 121 NFDEGHNGDGDFEGEEYNGGFQNFSGRFAAVPAPVKSSAAAAAT 165
           NFDEGHNGD DFEG+EY+GGFQ+FS RF+AVPA  KSS AA A+
Sbjct: 121 NFDEGHNGDVDFEGDEYSGGFQHFSDRFSAVPASGKSSGAAVAS 164

The following BLAST results are available for this feature:

BLAST of Lag0024475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923865.1	3.8e-79	87.80	uncharacterized protein LOC111431456 [Cucurbita moschata]	[more]
XP_023519821.1	1.9e-78	87.20	uncharacterized protein LOC111783153 [Cucurbita pepo subsp. pepo]	[more]
XP_038894780.1	2.4e-78	86.14	uncharacterized protein LOC120083201 [Benincasa hispida]	[more]
XP_023000665.1	3.2e-78	86.59	uncharacterized protein LOC111495035 [Cucurbita maxima]	[more]
KAG6584232.1	9.3e-78	86.59	hypothetical protein SDJN03_20164, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0024475 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47076:SF1	NHL DOMAIN PROTEIN	coord: 16..159
None	No IPR available	PANTHER	PTHR47076	NHL DOMAIN PROTEIN	coord: 16..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024475.1	Lag0024475.1	mRNA