Lag0024434 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024434
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr10: 3074023 .. 3077364 (-)
RNA-Seq Expression	Lag0024434
Synteny	Lag0024434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTCATAGCGTCTATGCTGGAGCTTCCACCAACAGCTACTATCCATCTTGAGGACAAGGTGCATTTGCCTCCAAGGGTATTGTAAGAACTTGATGTAGGGGAAAGAACCAAAAAACAGTTAGGCTAGGAGAGGGGGCCACTCATGGGTCATGGGAGTCAGAGCTTGATGTAGGGGAATCAAAGAATGTGGGGAAGTAGGATTGTTTTTGTGTCTTAGATAGTGAGGTCTTAGAGGGAGAGAACCAACTCTCTCGAATAGCTGGGAGGCTCTTGTTCTTATTGCTTATTGCTTATTTCGGAATATTCAGTGAATAACCTTCTGTCTATTGAATACCTCTTAATATGGCAGGGTTAGTTTGCTTCCATTCTGTGTTGAGTTTGTTTGTGTTGTATTTGCACTCTCAATAGGGCAGGGTTTGTTTACATTCTGTGTTGTGTTTGTTTGTGTTGTATTTGTAGGTTATTAAGGAGAAGATACCTAACAATATGTTTGCTCATATTTACCCCAGCTAAGTTAACATGCAATCGTTTTCATTTTGTCCACCATTGGAAAAGGCACGACTGGCCAATTTTGCAAACTAAACTAATAGAAAGCAAAGGTAAAATTGCACCATGCTCTACCTTCAACAGAAGGGAGAATTTGACAGAAAAGCTAATCAAGCAACAATAATATTCAACAACACTAAAACCATGCTAGAAAATTAATATTTGAGCAGCTAGATTATTAAGTATTCACATGGATATCTCACCACATTAATAAGCACAAACAAACAAGTATAACTATAAAAATATTACCTTAAAAGCTTCAAACATGCGGGCATCAAAGATCTGCTTAAAACTATCTCAACTTTCCTCCGTAAAGAACTGGTGAGCTTGCATTGCACTAGCAAACAACAGAGATGTAAGCAAGTATCATAGGATAATGCAAAAAAATCGATACCAATGCACTAACAAGAGAGTATTAGACTTCAGGAAATGGAGAGACTTGAACTCTCAGGTCCTAGAGCAACAATTCATTGTAACTGTCCATCAATTCTTTTGATAACGTTCCCGATTCAATTTTAATAGAAGGGAGGAATATAAATGGGAGGTCACCCACTAAGCTGTAAGTAACATTACCCATAATCCTCCATCATAGTTCTTTTTAAAAACTAATGATGGCTTGCATGAAGTGGTGCACAATCATTTTAACAGATACATGAAGTCATAATCAGGATCCACATGATTGAGAGTGAGAACCAAGTATATCAGTATTTTTTGGCTGCTATGAAGTTTAACTTGTCAAAGAATAATTTAAGGAAAAAAATATCTTTCATCTAGTTTCGATGGGTTAAAGACAATTAAAAAAAATAAAATACTGACAAGACTTATCAAAATGAGGGAAAAGAAAATGAAAATAGAAAACAAAAAGATGAAAGTCTAGGAGGAAGGGGAAGGAAGTTTGTGTACTTTAGAAATGGAAAGCGTAATCAACATTACCATACTCATGAATAATCAATCAGACAAAAAGATGAAAGTCTTGGAGAGAGGGGAATGGAGTTTTAACCCTAATCATCAAATATTTCAAGTTTCTTGGTTTACGTGCTAATCAAATATTTCTATTGAAATATTGATGAAGTAACTTATAATAAATTTTAGATCAGAAGAATAAAGGTACGAATTTCTACCTCATATCTTGTTGAACTTAAAAAGAAAAAAAATTCAAATAAGAATCAGAATCAAAAGAGAGAGAAAGAGAAAGAGAAAGAGAGAGGAACCTGCAAAAACCAAGTTAATATGTCCTCCCCTGCAAAACATCAAACTCCATTCTCAAATCTCTATTCTCTGGTCTTATATAGCCAATGCCAAAAGAATAAAAAGATAGAATCAAATCAATCAAAGATAATTGACGTAAGGCAACCATTATGTTTGAATAATCATTGTATTGAAGCAACTTGGTTCCAAACAACTATCCTAATCTTTTGTGACAACCTTCATCAACTAATGTTTTGAGAAAACCACTTTACCAAAACAAGGCTAGCTTGAGCACTCCCTCGTTATCATAAAAAGGCAACCAATATTTGGAAACAACCATTTTAAGGCAACTAATATTTTGGGACAACCATTGTACCATGACAACCGATATTTCGGTCACTTCAAGGTAACCAAAATTTTGGGAAAACTATTTTACCAAGGAAACCAATATTTTGAGATAACCGTCATTTCGAGACAACCATCGTATCAAGACAACCAATATTTTGTTAGACCCCCGATTTCTAAATACTATGAGATGAGGGGTAAGAAGGGAATTTCATCTCCAGGTTAGTTAGAAAATGCACACACTCGAAGGAGGGCTAGGGCTAAATGTGGAATTGGAGGAGAGTACAGATGGGAGATTTGCTTATTGCTGAATGTACTAGGCTACTGTCTTTATGTTTCTTTTATGCTTTCAGTCTGAGTATTGTGTGAGGAAAAGGAAAGTTTCCAATGCTCTCGAATTGATTGTGAGAGTTTGTAAGCCTCAAGGCAAGTTTTCTAATAGAAATATCAATATATTGTAAGAGGTTTCCTTACAAATTGGTACAAGAGCAACACCAACTTGGGGAGACTTGAGAAAATGGCACAATGGAAGATCGAAGAAAGCTAGACGTCACAAACCAGGAACTGGGAAGTGTAAAGGAGAAAGTTCGGAGGATACCAGCGATTGGAGACAGAATGAGTGCAATAAAGAAGTCCATGACAAATATTGAGGAGTAGACTGCGGAAACTCACGAGCCCTTGGCTATGATTGCATCAAAGTTAGCCCTATTGCGTTCGCGATCTTCATCATCCACGATGATAGAAGCTTCAGGCTGAAAGTTGGAGGAATGGACAGAAACTTACGAAACCACCGATCTCATTGAAGGAAAGTGTGAAAACCAGGAACCAAGAAATATCCAAAGACTAAAGCAAGTTTAAGAAAGTTGAGATGCCCGTTTTGGGATGAGATGACCCTGATTCATTGCTGTTCCGAGCCGATAGGTATTTCCAAATCCATAAACTATCTGATATCAAGAAACTTATTGTTGTTGTAGTTAGCTTTGAAGGAGTGGCACTGAATTGGTATCATGGGAAAGACAGAGAGCCCTTCAAGAATCAAAAAGATCTGAAACTTCAGTTGTTACAACGATTTAGAAGGAACAAGAAAGGAACATTGTGTGGGCGATTCCTAGTGGTGAAGCAGGAAACGACGATGACAAAGTACTGTGAGGATTTTGAAGAGTTGGTGCCACTATCACACCTGACCAATGAGGTATTGGAAAATACCTTCATGAATGGGCTTGACCCAGTCATCAAGGCAGAGGTGGTGATGTGCTAG

mRNA sequence

ATGGGCCTCATAGCGTCTATGCTGGAGCTTCCACCAACAGCTACTATCCATCTTGAGGACAAGGTGCATTTGCCTCCAAGGTCTGAGTATTGTGTGAGGAAAAGGAAAGTTTCCAATGCTCTCGAATTGATTGTGAGAGTTTGTAAGCCTCAAGGCAAGTTTTCTAATAGAAATATCAATATATTGTATTTCCAAATCCATAAACTATCTGATATCAAGAAACTTATTGTTGTTGTAGTTAGCTTTGAAGGAGTGGCACTGAATTGGTATCATGGGAAAGACAGAGAGCCCTTCAAGAATCAAAAAGATCTGAAACTTCAGTTGTTACAACGATTTAGAAGGAACAAGAAAGGAACATTGTGTGGGCGATTCCTAGTGGTGAAGCAGGAAACGACGATGACAAAGTACTGTGAGGATTTTGAAGAGTTGGTGCCACTATCACACCTGACCAATGAGGTATTGGAAAATACCTTCATGAATGGGCTTGACCCAGTCATCAAGGCAGAGGTGGTGATGTGCTAG

Coding sequence (CDS)

ATGGGCCTCATAGCGTCTATGCTGGAGCTTCCACCAACAGCTACTATCCATCTTGAGGACAAGGTGCATTTGCCTCCAAGGTCTGAGTATTGTGTGAGGAAAAGGAAAGTTTCCAATGCTCTCGAATTGATTGTGAGAGTTTGTAAGCCTCAAGGCAAGTTTTCTAATAGAAATATCAATATATTGTATTTCCAAATCCATAAACTATCTGATATCAAGAAACTTATTGTTGTTGTAGTTAGCTTTGAAGGAGTGGCACTGAATTGGTATCATGGGAAAGACAGAGAGCCCTTCAAGAATCAAAAAGATCTGAAACTTCAGTTGTTACAACGATTTAGAAGGAACAAGAAAGGAACATTGTGTGGGCGATTCCTAGTGGTGAAGCAGGAAACGACGATGACAAAGTACTGTGAGGATTTTGAAGAGTTGGTGCCACTATCACACCTGACCAATGAGGTATTGGAAAATACCTTCATGAATGGGCTTGACCCAGTCATCAAGGCAGAGGTGGTGATGTGCTAG

Protein sequence

MGLIASMLELPPTATIHLEDKVHLPPRSEYCVRKRKVSNALELIVRVCKPQGKFSNRNINILYFQIHKLSDIKKLIVVVVSFEGVALNWYHGKDREPFKNQKDLKLQLLQRFRRNKKGTLCGRFLVVKQETTMTKYCEDFEELVPLSHLTNEVLENTFMNGLDPVIKAEVVMC

Homology

[Close]

BLAST of Lag0024434 vs. NCBI nr
Match: XP_031745972.1 (uncharacterized protein LOC116406393 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 6.2e-24
Identity = 60/113 (53.10%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 63  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLC 122
           YFQIHKLSD +K++V  +SFEG ALNWY   ++R+ F    +LK +LL RFR +++G++C
Sbjct: 134 YFQIHKLSDAEKVLVATISFEGPALNWYRAQEERDKFTGWHNLKERLLVRFRSSREGSIC 193

Query: 123 GRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMNGLDPVIKAEVVMC 174
           G+FL +KQ+TT+ +Y  +F+ L+ PL+ L + V+E TFMNGL P IKAEVV C
Sbjct: 194 GQFLRIKQQTTVEEYRNEFDRLMAPLADLQDRVVEETFMNGLFPWIKAEVVFC 246

[Close]

BLAST of Lag0024434 vs. NCBI nr
Match: KAA0059263.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK03378.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 4.0e-23
Identity = 60/113 (53.10%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 63  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLC 122
           YFQIHKL++ +K++V  +SF+G ALNWY   ++R+ F +  DLK +LL RFR ++ G +C
Sbjct: 19  YFQIHKLNESEKMLVSTISFDGPALNWYRSQEERDKFFSWIDLKERLLVRFRSSRDGMIC 78

Query: 123 GRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMNGLDPVIKAEVVMC 174
           G+FL +KQETT+ +Y   F++LV PLSHL   V+E+TFMNGL P I+AEV  C
Sbjct: 79  GKFLRIKQETTVEEYRNLFDKLVAPLSHLQERVIEDTFMNGLLPWIRAEVAFC 131

[Close]

BLAST of Lag0024434 vs. NCBI nr
Match: TYK10830.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-23
Identity = 60/113 (53.10%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 63  YFQIHKLSDIKKLIVVVVSFEGVALNWYH-GKDREPFKNQKDLKLQLLQRFRRNKKGTLC 122
           YFQIH+L+D +K+IV  +SFEG ALNWY   ++R+ FKN  DLK +LL RFR  ++G +C
Sbjct: 129 YFQIHRLTDYEKMIVATISFEGPALNWYRVQEERDNFKNWLDLKERLLIRFRSVREGLIC 188

Query: 123 GRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMNGLDPVIKAEVVMC 174
           G+FL ++QE++M +Y   F++L+ P+S L + V+E TFMNGL P IKAEV  C
Sbjct: 189 GQFLRIRQESSMEEYRNQFDKLMAPVSDLPDRVIEETFMNGLLPWIKAEVEFC 241

[Close]

BLAST of Lag0024434 vs. NCBI nr
Match: KAA0050168.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.9e-23
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 63  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLC 122
           YFQIHKL+D++K+ +  +SF+G+ LNWY   ++R+ FKN  DLK +LL RFR  ++G++C
Sbjct: 52  YFQIHKLTDLEKMTMATISFKGLTLNWYRAQEERDKFKNWLDLKERLLIRFRSVREGSIC 111

Query: 123 GRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMNGLDPVIKAEVVMC 174
           G+FL ++QE++M +Y   F++L+ P+S L + V+E TFMNGL P IKAEV  C
Sbjct: 112 GQFLRIRQESSMEEYRNQFDKLMAPVSDLPDRVIEETFMNGLLPWIKAEVEFC 164

[Close]

BLAST of Lag0024434 vs. NCBI nr
Match: TYK18957.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-22
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 63  YFQIHKLSDIKKLIVVVVSFEGVALNWYHG-KDREPFKNQKDLKLQLLQRFRRNKKGTLC 122
           YFQIHKLSD +K++V  +SF+G AL+WY   ++RE F N  +LK +LL RFR ++ GT+ 
Sbjct: 94  YFQIHKLSDYEKMLVSTISFDGPALHWYRSQEEREKFLNWSNLKERLLVRFRSSRDGTIL 153

Query: 123 GRFLVVKQETTMTKYCEDFEELV-PLSHLTNEVLENTFMNGLDPVIKAEVVMC 174
           G+FL VKQETT+ +Y   F++LV PLS + + V+E+ FMNGL P I+AEVV C
Sbjct: 154 GKFLRVKQETTVDEYRNLFDKLVAPLSDVLDSVVEDAFMNGLFPWIRAEVVFC 206

The following BLAST results are available for this feature:

BLAST of Lag0024434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745972.1	6.2e-24	53.10	uncharacterized protein LOC116406393 [Cucumis sativus]	[more]
KAA0059263.1	4.0e-23	53.10	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK03378.1 Tran...	[more]
TYK10830.1	5.2e-23	53.10	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0050168.1	8.9e-23	50.44	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
TYK18957.1	1.5e-22	53.98	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0024434 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 77..163 e-value: 3.6E-7 score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024434.1	Lag0024434.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process