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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAGTGAATGAAGATTTGGGATTTGGTGAAAATCCATTTGATGGAAGCTTGAACAACAACTCATCCATGGTGGAGAAAAGACATTCTTCTTCACATGTGATCATGGAAGCAAATATGATGATCAGAAGAGATCAAGGTGATGATGAAGATGAAGATGATCATAATAATAATCCTTCAAATAGTTTCCATAGAGAAATATTATTCCCTACTATGATCACTGGCCAAGCCCCTACCAACAACAACAACAACAATTGTAATGTCTTCTCCCCCAACTCCGCCTCGTGCTACAGCAACGACACCGTTTTGGACGCCGTTGAAGTTCTCGACATTCACCGACACCACCATCTGTCGGTAATGGCCGAGAGGAAGCTGAGAAGAATGATATCGAACCGAGAATCAGCCAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAAGAGTTGCAGTATCAGGCAAGATTATTTTTAAATATATACTTCGAGATCTCAATAGGTTAAAATGTCGTTGTCAAATTGTCTAAAGAACGTTTTTTATGGAAATGTTGACATGTCGATGAAAATTTAATGTCAACTGTCAGGTGGGACAGTTGGAGGTATCGAACCGGCAGCTGTCGGAAAAGCTGATACAGCTGTTGGAATGCAACCAGCAGATCCTCCATGA mRNA sequence ATGGAAGTGAATGAAGATTTGGGATTTGGTGAAAATCCATTTGATGGAAGCTTGAACAACAACTCATCCATGGTGGAGAAAAGACATTCTTCTTCACATGTGATCATGGAAGCAAATATGATGATCAGAAGAGATCAAGGTGATGATGAAGATGAAGATGATCATAATAATAATCCTTCAAATAGTTTCCATAGAGAAATATTATTCCCTACTATGATCACTGGCCAAGCCCCTACCAACAACAACAACAACAATTGTAATGTCTTCTCCCCCAACTCCGCCTCGTGCTACAGCAACGACACCGTTTTGGACGCCGTTGAAGTTCTCGACATTCACCGACACCACCATCTGTCGGTAATGGCCGAGAGGAAGCTGAGAAGAATGATATCGAACCGAGAATCAGCCAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAAGAGTTGCAGTATCAGGCAAGATTATTTTTAAATATATACTTCGAGATCTCAATAGGTGGGACAGTTGGAGGTATCGAACCGGCAGCTGTCGGAAAAGCTGATACAGCTGTTGGAATGCAACCAGCAGATCCTCCATGA Coding sequence (CDS) ATGGAAGTGAATGAAGATTTGGGATTTGGTGAAAATCCATTTGATGGAAGCTTGAACAACAACTCATCCATGGTGGAGAAAAGACATTCTTCTTCACATGTGATCATGGAAGCAAATATGATGATCAGAAGAGATCAAGGTGATGATGAAGATGAAGATGATCATAATAATAATCCTTCAAATAGTTTCCATAGAGAAATATTATTCCCTACTATGATCACTGGCCAAGCCCCTACCAACAACAACAACAACAATTGTAATGTCTTCTCCCCCAACTCCGCCTCGTGCTACAGCAACGACACCGTTTTGGACGCCGTTGAAGTTCTCGACATTCACCGACACCACCATCTGTCGGTAATGGCCGAGAGGAAGCTGAGAAGAATGATATCGAACCGAGAATCAGCCAGGAGGTCGAGGATGAGGAAGAAGAAGCAGATCGAAGAGTTGCAGTATCAGGCAAGATTATTTTTAAATATATACTTCGAGATCTCAATAGGTGGGACAGTTGGAGGTATCGAACCGGCAGCTGTCGGAAAAGCTGATACAGCTGTTGGAATGCAACCAGCAGATCCTCCATGA Protein sequence MEVNEDLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEANMMIRRDQGDDEDEDDHNNNPSNSFHREILFPTMITGQAPTNNNNNNCNVFSPNSASCYSNDTVLDAVEVLDIHRHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARLFLNIYFEISIGGTVGGIEPAAVGKADTAVGMQPADPP
Homology
BLAST of Lag0024239 vs. NCBI nr
Match: TYJ98964.1 (light-inducible protein CPRF3-like [Cucumis melo var. makuwa]) HSP 1 Score: 210.7 bits (535), Expect = 1.1e-50 Identity = 122/165 (73.94%), Postives = 136/165 (82.42%), Query Frame = 0
Query: 1 MEVNEDLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEANMMIRRDQGD-DEDEDDHNNNP 60
ME+NEDLGFGENPF+GSL KRH SSH++ME N M+RR +GD + D +DH +N
Sbjct: 1 MEMNEDLGFGENPFNGSL--------KRHCSSHLMMETNRMMRRSEGDTNNDHEDHESNG 60
Query: 61 S-NSFHREILFP-TMI-TGQAPTNNNNNNCNVF-SPNSASCYSNDTVLDAVEVLDIHRHH 120
S +FHREI+FP TMI T Q PTNNNNNN NVF SPNSASCYSND VLD VEVLD+HRHH
Sbjct: 61 SCGNFHREIVFPATMITTSQTPTNNNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHH 120
Query: 121 HLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQARLFLNIY 161
HL+VMAERKLRRMISNRESARRSRMRKKKQIEELQYQAR F N+Y
Sbjct: 121 HLTVMAERKLRRMISNRESARRSRMRKKKQIEELQYQAR-FSNLY 156
BLAST of Lag0024239 vs. NCBI nr
Match: XP_008454802.1 (PREDICTED: light-inducible protein CPRF3-like [Cucumis melo]) HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48 Identity = 117/157 (74.52%), Postives = 130/157 (82.80%), Query Frame = 0
Query: 1 MEVNEDLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEANMMIRRDQGD-DEDEDDHNNNP 60
ME+NEDLGFGENPF+GSL KRH SSH++ME N M+RR +GD + D +DH +N
Sbjct: 1 MEMNEDLGFGENPFNGSL--------KRHCSSHLMMETNRMMRRSEGDTNNDHEDHESNG 60
Query: 61 S-NSFHREILFP-TMI-TGQAPTNNNNNNCNVF-SPNSASCYSNDTVLDAVEVLDIHRHH 120
S +FHREI+FP TMI T Q PTNNNNNN NVF SPNSASCYSND VLD VEVLD+HRHH
Sbjct: 61 SCGNFHREIVFPATMITTSQTPTNNNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHH 120
Query: 121 HLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 153
HL+VMAERKLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 121 HLTVMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 149
BLAST of Lag0024239 vs. NCBI nr
Match: XP_038895383.1 (uncharacterized protein LOC120083621 [Benincasa hispida]) HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46 Identity = 112/153 (73.20%), Postives = 122/153 (79.74%), Query Frame = 0
Query: 1 MEVNEDLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEANMMIRRDQGDDEDEDDHNNNPS 60
ME+NEDLGFGENPF+GSL KRH SSH+IME N ++RR+ D EDE +N S
Sbjct: 1 MELNEDLGFGENPFNGSL--------KRHCSSHLIMETNRVMRREGDDHEDE----SNGS 60
Query: 61 NSFHREILFPTM-ITGQAPTNNNNNNCNVFSPNSASCYSNDTVLDAVEVLDIHRHHHLSV 120
FHREILFPTM T Q PT NNNNCNVFSPNS S YSND VLD VE+LD+HRHHHL+V
Sbjct: 61 CGFHREILFPTMNTTCQPPT--NNNNCNVFSPNSTSYYSNDNVLDVVEILDVHRHHHLTV 120
Query: 121 MAERKLRRMISNRESARRSRMRKKKQIEELQYQ 153
MAERKLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 121 MAERKLRRMISNRESARRSRMRKKKQIEELQYQ 139
BLAST of Lag0024239 vs. NCBI nr
Match: XP_004137610.2 (transcriptional activator TAF-1 [Cucumis sativus] >KAE8652530.1 hypothetical protein Csa_014039 [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 1.6e-44 Identity = 108/156 (69.23%), Postives = 123/156 (78.85%), Query Frame = 0
Query: 1 MEVNEDLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEAN-MMIRRDQGDDEDEDDHNNNP 60
ME+NEDLGFGENPF+GS KRH SSH++ME N M+RR +GD+ D +DH +N
Sbjct: 49 MEMNEDLGFGENPFNGS-------CLKRHCSSHLMMETNRTMMRRSEGDNNDHEDHESNG 108
Query: 61 S--NSFHREILFPTMITGQAPTNNNNNNCNVF-SPNSASCYSNDTVLDAVEVLDIHRHHH 120
S N HREI+FP+ + + T NNNN NVF SPNSASCYSND VLD VEVLD+HRHHH
Sbjct: 109 SCGNLIHREIVFPSTMITTSHTPTNNNNSNVFSSPNSASCYSNDNVLDVVEVLDVHRHHH 168
Query: 121 LSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 153
L+VMAERKLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 169 LTVMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 197
BLAST of Lag0024239 vs. NCBI nr
Match: XP_022137584.1 (bZIP transcription factor 68 [Momordica charantia]) HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29 Identity = 105/178 (58.99%), Postives = 114/178 (64.04%), Query Frame = 0
Query: 1 MEVNE-----DLGFGENPFDGSLNNNSSMVEKRHSSSHVIMEANMMIRRDQG----DDED 60
MEVNE DL FGENPFDGSL NNSSMV+ R S MMIRR+ G D D
Sbjct: 1 MEVNEMKGVDDLAFGENPFDGSLKNNSSMVKIRRHYSF----PEMMIRREDGIHEYGDHD 60
Query: 61 ED-----------DHNNNPSN----SFHREILFPTMITGQ-APTNNNNNNCNVFSPNSAS 120
D ++NN+PSN FH EI FPT+IT Q APT VFSPN+AS
Sbjct: 61 HDGDGDEMSLNNNNNNNDPSNDSCGGFHGEI-FPTIITRQTAPT-------AVFSPNTAS 120
Query: 121 CYSNDTVLDAVEVLDIH-RHHHLSVMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 153
CYSND V D D H RHH L++MAERKLRRMISNRESARRSRMRKKKQIEELQYQ
Sbjct: 121 CYSNDAVFDP----DGHRRHHQLTIMAERKLRRMISNRESARRSRMRKKKQIEELQYQ 162
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYJ98964.1 | 1.1e-50 | 73.94 | light-inducible protein CPRF3-like [Cucumis melo var. makuwa] | [more] |
| XP_008454802.1 | 1.1e-48 | 74.52 | PREDICTED: light-inducible protein CPRF3-like [Cucumis melo] | [more] |
| XP_038895383.1 | 2.2e-46 | 73.20 | uncharacterized protein LOC120083621 [Benincasa hispida] | [more] |
| XP_004137610.2 | 1.6e-44 | 69.23 | transcriptional activator TAF-1 [Cucumis sativus] >KAE8652530.1 hypothetical pro... | [more] |
| XP_022137584.1 | 1.1e-29 | 58.99 | bZIP transcription factor 68 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 132..152 |
| None | No IPR available | GENE3D | 1.20.5.170 | | coord: 121..156
e-value: 2.1E-7
score: 32.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..29 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..30 |
| None | No IPR available | PANTHER | PTHR46324:SF7 | BASIC LEUCINE-ZIPPER 70-RELATED | coord: 1..153 |
| None | No IPR available | CDD | cd14702 | bZIP_plant_GBF1 | coord: 124..153
e-value: 6.16369E-13
score: 58.6994 |
| None | No IPR available | SUPERFAMILY | 57959 | Leucine zipper domain | coord: 123..158 |
| IPR004827 | Basic-leucine zipper domain | PFAM | PF00170 | bZIP_1 | coord: 123..153
e-value: 1.8E-7
score: 31.2 |
| IPR004827 | Basic-leucine zipper domain | PROSITE | PS00036 | BZIP_BASIC | coord: 126..141 |
| IPR004827 | Basic-leucine zipper domain | PROSITE | PS50217 | BZIP | coord: 121..153
score: 8.553574 |
| IPR044521 | Basic leucine zipper 8/43 | PANTHER | PTHR46324 | BASIC LEUCINE ZIPPER 43-RELATED | coord: 1..153 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
DNA-binding transcription factor activity |
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