Lag0024217 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024217
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor TCP13-like
Location	chr10: 1303891 .. 1304505 (+)
RNA-Seq Expression	Lag0024217
Synteny	Lag0024217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCAAAATTGAAGCAAGAGGGATTTCAAGCTCAAGCAAAACCAACAATGGAGGCCAAAAGAAACAGAGCATCTTCAAGGCAAGGGCCTTGTCTAAGAGGCAACCCAAGAATCTTTAGAGTGTCTCCTTTATTTGGAGGAAAGGACAGACACAGCAAAGTCTGCACAATTAAGGGCTTAAGAGACAGAAGAATTAGGCTTTCAGCTCCAACTGCAATTCAGCTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGATTGGCTCATTGATGTAACAAGATTTGAAATTGATAAGCTCCCACCTCTCCAATTTGCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCAGTCTTCACTGATTCTTCCTCAGGTTTGGGCCAAGAATGAAGAAACTGAGAGCCTTTTGATTGATGATGATCTTCAAACCAATGCCTTGGATGAAAACTTTTGCCATTTTCAGCCTTCTACCTTTCCATTCCCATTAATGGAGCTCAATCCAGCTCCGTTTTCCTCGTCGTCGTTGCTGTTCTGTCCGTTGATGATGCCGTCGGAAGTTTCTCCCTATCTTCCCGATGGCAGAAATCAAGAGTGA

mRNA sequence

ATGATCTCAAAATTGAAGCAAGAGGGATTTCAAGCTCAAGCAAAACCAACAATGGAGGCCAAAAGAAACAGAGCATCTTCAAGGCAAGGGCCTTGTCTAAGAGGCAACCCAAGAATCTTTAGAGTGTCTCCTTTATTTGGAGGAAAGGACAGACACAGCAAAGTCTGCACAATTAAGGGCTTAAGAGACAGAAGAATTAGGCTTTCAGCTCCAACTGCAATTCAGCTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGATTGGCTCATTGATGTAACAAGATTTGAAATTGATAAGCTCCCACCTCTCCAATTTGCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCAGTCTTCACTGATTCTTCCTCAGGTTTGGGCCAAGAATGAAGAAACTGAGAGCCTTTTGATTGATGATGATCTTCAAACCAATGCCTTGGATGAAAACTTTTGCCATTTTCAGCCTTCTACCTTTCCATTCCCATTAATGGAGCTCAATCCAGCTCCGTTTTCCTCGTCGTCGTTGCTGTTCTGTCCGTTGATGATGCCGTCGGAAGTTTCTCCCTATCTTCCCGATGGCAGAAATCAAGAGTGA

Coding sequence (CDS)

ATGATCTCAAAATTGAAGCAAGAGGGATTTCAAGCTCAAGCAAAACCAACAATGGAGGCCAAAAGAAACAGAGCATCTTCAAGGCAAGGGCCTTGTCTAAGAGGCAACCCAAGAATCTTTAGAGTGTCTCCTTTATTTGGAGGAAAGGACAGACACAGCAAAGTCTGCACAATTAAGGGCTTAAGAGACAGAAGAATTAGGCTTTCAGCTCCAACTGCAATTCAGCTTTATGATTTGCAAAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGATTGGCTCATTGATGTAACAAGATTTGAAATTGATAAGCTCCCACCTCTCCAATTTGCAAAAGATTTTGACCCAAATGCTTCAATTCTTCATCAGTCTTCACTGATTCTTCCTCAGGTTTGGGCCAAGAATGAAGAAACTGAGAGCCTTTTGATTGATGATGATCTTCAAACCAATGCCTTGGATGAAAACTTTTGCCATTTTCAGCCTTCTACCTTTCCATTCCCATTAATGGAGCTCAATCCAGCTCCGTTTTCCTCGTCGTCGTTGCTGTTCTGTCCGTTGATGATGCCGTCGGAAGTTTCTCCCTATCTTCCCGATGGCAGAAATCAAGAGTGA

Protein sequence

MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNASILHQSSLILPQVWAKNEETESLLIDDDLQTNALDENFCHFQPSTFPFPLMELNPAPFSSSSLLFCPLMMPSEVSPYLPDGRNQE

Homology

[Close]

BLAST of Lag0024217 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71
Identity = 151/218 (69.27%), Postives = 163/218 (74.77%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MISKLKQEG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 8   MISKLKQEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 67

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL+DVTRF+IDKLPPL F KDFDPNAS
Sbjct: 68  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNAS 127

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                LQTNA+ EN CHF P +FPF
Sbjct: 128 FLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPF 187

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF PL MP EVS YLP+G N
Sbjct: 188 PLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of Lag0024217 vs. NCBI nr
Match: KAG6584403.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.9 bits (712), Expect = 3.6e-71
Identity = 151/218 (69.27%), Postives = 163/218 (74.77%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MISKLKQEG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 8   MISKLKQEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 67

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRF+IDKLPPL F KDFDPNAS
Sbjct: 68  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNAS 127

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                L+TNA+ EN CHF P +FPF
Sbjct: 128 FLHHLDISDAAAKAKHEETGMLLLQKLSPSPNHASFSALQLRTNAMTENCCHFDPPSFPF 187

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF PL MP EVS YLP+G N
Sbjct: 188 PLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of Lag0024217 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 4.7e-71
Identity = 150/218 (68.81%), Postives = 163/218 (74.77%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MISKLKQEG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 8   MISKLKQEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 67

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRF+IDKLPPL F KDFDPNAS
Sbjct: 68  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNAS 127

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                LQTNA+ EN CHF P +FPF
Sbjct: 128 FLHHLDIADATAKAKHEETGMLLLQKLSPSPNHASFSALQLQTNAMTENCCHFDPPSFPF 187

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF P+ +P EVS YLP+G N
Sbjct: 188 PLMDQANPASFSSPSEQLLFRPMTVPPEVSSYLPNGGN 224

[Close]

BLAST of Lag0024217 vs. NCBI nr
Match: KAG7019990.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 150/218 (68.81%), Postives = 163/218 (74.77%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MISKLKQEG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 131 MISKLKQEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 190

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLS+PSKVIDWLIDVTRF+IDKLPPL F KDFDPNAS
Sbjct: 191 LRDRRIRLSAPTAIQLYDLQNRLGLSRPSKVIDWLIDVTRFDIDKLPPLHFPKDFDPNAS 250

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                L+TNA+ EN CHF P +FPF
Sbjct: 251 FLHHLDISDAAAKAKHEETGMLLLQKLSPSPNHASFSALQLRTNAMTENCCHFDPPSFPF 310

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF PL MP EVS YLP+G N
Sbjct: 311 PLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 347

[Close]

BLAST of Lag0024217 vs. NCBI nr
Match: XP_022137286.1 (transcription factor TCP24 [Momordica charantia])

HSP 1 Score: 268.1 bits (684), Expect = 6.3e-68
Identity = 145/201 (72.14%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 18  MEAK-RNRASSRQ-GPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQ 77
           MEAK RNRASSRQ GPCLRGNPRIFRVS LFGGKDRHSKV TIKGLRDRRIRLS PTAIQ
Sbjct: 1   MEAKIRNRASSRQEGPCLRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQ 60

Query: 78  LYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNASILHQSSLILPQVW-- 137
           LYDLQN+LGL QPSKVIDWLIDVTRF+IDKLPPLQ  KDFDPNAS+L+QSS++LPQV   
Sbjct: 61  LYDLQNKLGLGQPSKVIDWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHF 120

Query: 138 -----AKNEETESLLIDD-----------DLQTNALDENFCHFQPSTFPFPLMELNPAPF 196
                A+N  TE LL               LQ+NA+DE+FCHF+PS+FPFP ME NP  F
Sbjct: 121 DVAVKARNGGTERLLAQKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSF 180

[Close]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.6e-32
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 25  ASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLG 84
           +SSRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLG
Sbjct: 40  SSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLG 99

Query: 85  LSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFD 117
           LSQPSKVIDWL++  + ++DKLPPLQF   F+
Sbjct: 100 LSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 36  NPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 95
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS  TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 96  IDVTRFEIDKLPPLQFAKDF---DPNASILHQS 126
           ++V + ++D LPPLQF   F   +PN + L +S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 36  NPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 95
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS PTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 96  IDVTRFEIDKLPPLQFAKDFDPNASIL--HQSSLILPQ 132
           +D  + EID+LPPL  + +   N SI   HQS L L Q
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFLNLGQ 156

[Close]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot
Match: Q9C758 (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.6e-19
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 38  RIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLID 97
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ+RLG  QPSK ++WLI+
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 98  VTRFEIDKLPPL 110
                I  LP L
Sbjct: 100 AASDSITDLPLL 111

[Close]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot
Match: Q93V43 (Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-18
Identity = 47/87 (54.02%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 23  NRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNR 82
           N  ++R       + RI RVS   GGKDRHSKV T KG RDRR+RLS  TA+Q YDLQ+R
Sbjct: 17  NEVNNRLSRWHHNSSRIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDR 76

Query: 83  LGLSQPSKVIDWLIDVTRFEIDKLPPL 110
           LG  QPSK ++WLI      I +LP L
Sbjct: 77  LGYDQPSKAVEWLIKAAEDSISELPSL 103

[Close]

BLAST of Lag0024217 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.0e-71
Identity = 151/218 (69.27%), Postives = 163/218 (74.77%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MISKLKQEG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 8   MISKLKQEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 67

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL+DVTRF+IDKLPPL F KDFDPNAS
Sbjct: 68  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLMDVTRFDIDKLPPLHFPKDFDPNAS 127

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                LQTNA+ EN CHF P +FPF
Sbjct: 128 FLHHFDIADAAAKAKHEETGMLLLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPF 187

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF PL MP EVS YLP+G N
Sbjct: 188 PLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLPNGGN 224

[Close]

BLAST of Lag0024217 vs. ExPASy TrEMBL
Match: A0A6J1C656 (transcription factor TCP24 OS=Momordica charantia OX=3673 GN=LOC111008784 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-68
Identity = 145/201 (72.14%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 18  MEAK-RNRASSRQ-GPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQ 77
           MEAK RNRASSRQ GPCLRGNPRIFRVS LFGGKDRHSKV TIKGLRDRRIRLS PTAIQ
Sbjct: 1   MEAKIRNRASSRQEGPCLRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQ 60

Query: 78  LYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNASILHQSSLILPQVW-- 137
           LYDLQN+LGL QPSKVIDWLIDVTRF+IDKLPPLQ  KDFDPNAS+L+QSS++LPQV   
Sbjct: 61  LYDLQNKLGLGQPSKVIDWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHF 120

Query: 138 -----AKNEETESLLIDD-----------DLQTNALDENFCHFQPSTFPFPLMELNPAPF 196
                A+N  TE LL               LQ+NA+DE+FCHF+PS+FPFP ME NP  F
Sbjct: 121 DVAVKARNGGTERLLAQKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSF 180

[Close]

BLAST of Lag0024217 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.9e-68
Identity = 148/218 (67.89%), Postives = 160/218 (73.39%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKG 60
           MIS+LK EG   +AK  ME KR +  SRQGP LRGNPRIFRVSPLFGGKDRHSKVCT+KG
Sbjct: 8   MISRLKPEGVHVEAK-QMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKG 67

Query: 61  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNAS 120
           LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTR +IDKLPPL F KDFDPNAS
Sbjct: 68  LRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNAS 127

Query: 121 ILHQSSLILPQVWAKNEETESLLIDD-------------DLQTNALDENFCHFQPSTFPF 180
            LH   +      AK+EET  LL+                LQTNA+ EN CHF P +FPF
Sbjct: 128 FLH-LDIADAAAKAKHEETGMLLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPSFPF 187

Query: 181 PLM-ELNPAPFSSSS--LLFCPLMMPSEVSPYLPDGRN 203
           PLM + NPA FSS S  LLF PL MP EVS YL +G N
Sbjct: 188 PLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLRNGGN 223

[Close]

BLAST of Lag0024217 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.4e-59
Identity = 127/181 (70.17%), Postives = 140/181 (77.35%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTM-EAKRNRASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIK 60
           MISKLK+EG   +AK    + K+ R  SRQG  LRGNPRIFRVSP FGGKDRHSKVCTIK
Sbjct: 1   MISKLKEEGAHDEAKQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIK 60

Query: 61  GLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPNA 120
           GLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTRFEIDKLPPL F KDFDPNA
Sbjct: 61  GLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNA 120

Query: 121 SILHQSSLILPQVWAKNEETESLLIDDDLQTNALDENFCHFQPSTFPFPLM--ELNPAPF 179
           SILH S +      AKNEET+  L+   +QTN ++    HF+P TFPFP M  + N APF
Sbjct: 121 SILHHSDIGDAAFKAKNEETDHTLL---VQTNDINGVCSHFEPPTFPFPFMDDQTNSAPF 178

[Close]

BLAST of Lag0024217 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.2e-58
Identity = 127/183 (69.40%), Postives = 144/183 (78.69%), Query Frame = 0


Query: 1   MISKLKQEGFQAQAKPTMEAKRNRA--SSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTI 60
           MISKLK++G   +AK  ME KR +A   SRQG  LRGNPRIFRVSP FGGKDRHSKVCTI
Sbjct: 1   MISKLKEDGAHDEAK-QMEGKRKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTI 60

Query: 61  KGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFDPN 120
           KGLRDRRIRLS PTAIQLYDLQN+LGLSQPSKVIDWLIDVTRFEIDKLPPL F KDFDPN
Sbjct: 61  KGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLHFPKDFDPN 120

Query: 121 ASILHQSSL--ILPQVWAKNEETESLLIDDDLQTNALDENFCHFQPSTFPFPLM-ELNPA 179
           ASILH S +      + AKNEET+  L+   +QTN ++ +  HF+P +FPFP M + N +
Sbjct: 121 ASILHHSDIGGDAALMKAKNEETDQTLL---VQTNDINGDSSHFEPPSFPFPFMYQTNSS 179

[Close]

BLAST of Lag0024217 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-33
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 25  ASSRQGPCLRGNPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLG 84
           +SSRQ      NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS PTAIQLYDLQ+RLG
Sbjct: 40  SSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLG 99

Query: 85  LSQPSKVIDWLIDVTRFEIDKLPPLQFAKDFD 117
           LSQPSKVIDWL++  + ++DKLPPLQF   F+
Sbjct: 100 LSQPSKVIDWLLEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of Lag0024217 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 131.3 bits (329), Expect = 8.6e-31
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 36  NPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 95
           NPRI RVS  FGGKDRHSKVCT++GLRDRRIRLS  TAIQ+YDLQ RLGLSQPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 96  IDVTRFEIDKLPPLQFAKDF---DPNASILHQS 126
           ++V + ++D LPPLQF   F   +PN + L +S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of Lag0024217 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-30
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 36  NPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 95
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS PTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 96  IDVTRFEIDKLPPLQFAKDFDPNASIL--HQSSLILPQ 132
           +D  + EID+LPPL  + +   N SI   HQS L L Q
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFLNLGQ 156

[Close]

BLAST of Lag0024217 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 127.9 bits (320), Expect = 9.5e-30
Identity = 64/98 (65.31%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 36  NPRIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWL 95
           +PRI RVS  FGGKDRHSKVCT++GLRDRR+RLS PTAIQLYDLQ RLG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 96  IDVTRFEIDKLPPLQFAKDFDPNASIL--HQSSLILPQ 132
           +D  + EID+LPPL  + +   N SI   HQS L L Q
Sbjct: 122 LDAAKEEIDELPPLPISPE---NFSIFNHHQSFLNLGQ 156

[Close]

BLAST of Lag0024217 vs. TAIR 10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 )

HSP 1 Score: 95.9 bits (237), Expect = 4.0e-20
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 38  RIFRVSPLFGGKDRHSKVCTIKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLID 97
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ+RLG  QPSK ++WLI+
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 98  VTRFEIDKLPPL 110
                I  LP L
Sbjct: 100 AASDSITDLPLL 111

The following BLAST results are available for this feature:

BLAST of Lag0024217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001048.1	2.1e-71	69.27	transcription factor TCP13-like [Cucurbita maxima]	[more]
KAG6584403.1	3.6e-71	69.27	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023519980.1	4.7e-71	68.81	transcription factor TCP13-like [Cucurbita pepo subsp. pepo]	[more]
KAG7019990.1	1.0e-70	68.81	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022137286.1	6.3e-68	72.14	transcription factor TCP24 [Momordica charantia]	[more]

BLAST of Lag0024217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	7.6e-32	71.74	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	1.2e-29	68.82	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	1.3e-28	65.31	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
Q9C758	5.6e-19	66.67	Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1	[more]
Q93V43	2.1e-18	54.02	Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1	[more]

BLAST of Lag0024217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPD9	1.0e-71	69.27	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1C656	3.1e-68	72.14	transcription factor TCP24 OS=Momordica charantia OX=3673 GN=LOC111008784 PE=4 S...	[more]
A0A6J1E7C6	8.9e-68	67.89	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]
A0A0A0LTI3	4.4e-59	70.17	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]
A0A5D3BIQ9	2.2e-58	69.40	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Lag0024217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	5.4e-33	71.74	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	8.6e-31	68.82	TCP domain protein 17	[more]
AT3G02150.1	9.5e-30	65.31	plastid transcription factor 1	[more]
AT3G02150.2	9.5e-30	65.31	plastid transcription factor 1	[more]
AT1G30210.1	4.0e-20	66.67	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 48..126 e-value: 9.7E-24 score: 84.7
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 48..106 score: 26.412922
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR31072:SF119	TRANSCRIPTION FACTOR TCP17	coord: 5..126
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 5..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024217.1	Lag0024217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding