Lag0024197 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0024197
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr10: 1140784 .. 1141137 (+)
RNA-Seq Expression	Lag0024197
Synteny	Lag0024197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAACACTCGGAGGCGATTGAAATGGAGAGAGAAGAGGAAGGGAGAGGGGAAATAAGTAAAGAAGAAGAAGAAAAGAGGGGGAAAAAATGGAGGAGAATGAAAATGGGAAGAGTCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGTGAGACGCAGCGCAGGTTCTGGTGAGTGTGTTCTCAAGTTGCAGGTTGGGGCTCCAATCATCCACTACCACCACCTGCAACTAGCCGTAATCCTCGCCCTTCTCCAATTTCTGGCAGCTCTTGCTTTTGCTCTTTCTCCTACTCTTCCTCTCAAAGTTCTTGTTCAACTTTGCTATTGCCACACCTAA

mRNA sequence

ATGGGAAAACACTCGGAGGCGATTGAAATGGAGAGAGAAGAGGAAGGGAGAGGGGAAATAAGTAAAGAAGAAGAAGAAAAGAGGGGGAAAAAATGGAGGAGAATGAAAATGGGAAGAGTCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGTGAGACGCAGCGCAGGTTCTGGTGAGTGTGTTCTCAAGTTGCAGGTTGGGGCTCCAATCATCCACTACCACCACCTGCAACTAGCCGTAATCCTCGCCCTTCTCCAATTTCTGGCAGCTCTTGCTTTTGCTCTTTCTCCTACTCTTCCTCTCAAAGTTCTTGTTCAACTTTGCTATTGCCACACCTAA

Coding sequence (CDS)

ATGGGAAAACACTCGGAGGCGATTGAAATGGAGAGAGAAGAGGAAGGGAGAGGGGAAATAAGTAAAGAAGAAGAAGAAAAGAGGGGGAAAAAATGGAGGAGAATGAAAATGGGAAGAGTCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGTGAGACGCAGCGCAGGTTCTGGTGAGTGTGTTCTCAAGTTGCAGGTTGGGGCTCCAATCATCCACTACCACCACCTGCAACTAGCCGTAATCCTCGCCCTTCTCCAATTTCTGGCAGCTCTTGCTTTTGCTCTTTCTCCTACTCTTCCTCTCAAAGTTCTTGTTCAACTTTGCTATTGCCACACCTAA

Protein sequence

MGKHSEAIEMEREEEGRGEISKEEEEKRGKKWRRMKMGRVHVVISGEGFTSCTVRVRRSAGSGECVLKLQVGAPIIHYHHLQLAVILALLQFLAALAFALSPTLPLKVLVQLCYCHT

Homology

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BLAST of Lag0024197 vs. NCBI nr
Match: KGN64058.1 (hypothetical protein Csa_013493 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 37  MGRVHVVISGEGFTSCTVRVRR----SAGSGECVLKLQVGAPIIHYHHLQLAVILA-LLQ 96
           MGR+HVVISGEGFTSCTVR +R    S G      KLQV API H HHLQ+AVILA LLQ
Sbjct: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVG-----FKLQVEAPISHSHHLQVAVILAPLLQ 60

Query: 97  FLAALAFALSPTLPLKVLVQLC 114
           FLA +A  ++    + V V LC
Sbjct: 61  FLAGVAVVIA----VSVSVSLC 73

The following BLAST results are available for this feature:

BLAST of Lag0024197 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64058.1	2.9e-09	59.76	hypothetical protein Csa_013493 [Cucumis sativus]	[more]

BLAST of Lag0024197 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0024197.1	Lag0024197.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane